RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 HERV-K104P63124 156 aa9.32□□□□□ -0.92
SF3B1-204ENST00000414963 BOD1L2Q8IYS8 172 aa9.32□□□□□ -0.92
SF3B1-204ENST00000414963 SLPIP03973 132 aa9.31□□□□□ -0.92
SF3B1-204ENST00000414963 C2orf82Q6UX34 121 aa9.31□□□□□ -0.92
SF3B1-204ENST00000414963 Q8N814 137 aa9.31□□□□□ -0.92
SF3B1-204ENST00000414963 LINC00526Q96FQ7 95 aa9.31□□□□□ -0.92
SF3B1-204ENST00000414963 TTTY13Q9BZ97 58 aa9.31□□□□□ -0.92
SF3B1-204ENST00000414963 DNAH17Q9UFH2 4485 aa9.31□□□□□ -0.92
SF3B1-204ENST00000414963 ZNF815PA8K554 130 aa9.3□□□□□ -0.92
SF3B1-204ENST00000414963 CNBPP62633 177 aaKnown RBP9.3□□□□□ -0.92
SF3B1-204ENST00000414963 UNQ6190/PRO20217Q6UXQ8 127 aa9.3□□□□□ -0.92
SF3B1-204ENST00000414963 C14orf144Q96I85 54 aa9.3□□□□□ -0.92
SF3B1-204ENST00000414963 CAMK2N2Q96S95 79 aa9.3□□□□□ -0.92
SF3B1-204ENST00000414963 KMT2CQ8NEZ4 4911 aaKnown RBP9.3□□□□□ -0.92
SF3B1-204ENST00000414963 HYDINQ4G0P3 5121 aa9.29□□□□□ -0.92
SF3B1-204ENST00000414963 TNP2Q05952 138 aa9.29□□□□□ -0.92
SF3B1-204ENST00000414963 SYCNQ0VAF6 134 aa9.29□□□□□ -0.92
SF3B1-204ENST00000414963 RNF151Q2KHN1 245 aa9.29□□□□□ -0.92
SF3B1-204ENST00000414963 C10orf25Q5T742 122 aa9.29□□□□□ -0.92
SF3B1-204ENST00000414963 SLC25A34Q6PIV7 304 aa9.29□□□□□ -0.92
SF3B1-204ENST00000414963 TRBV30A0A0K0K1B3 111 aa9.28□□□□□ -0.92
SF3B1-204ENST00000414963 Q6ZRU5 148 aa9.28□□□□□ -0.92
SF3B1-204ENST00000414963 LINC00336Q6ZUF6 198 aa9.28□□□□□ -0.92
SF3B1-204ENST00000414963 RYR2Q92736 4967 aa9.27□□□□□ -0.93
SF3B1-204ENST00000414963 A0A0J9YXY3 114 aa9.27□□□□□ -0.93
SF3B1-204ENST00000414963 LINC00587B1AMM8 73 aa9.27□□□□□ -0.93
SF3B1-204ENST00000414963 EREGO14944 169 aa9.27□□□□□ -0.93
SF3B1-204ENST00000414963 TIMM17BO60830 172 aa9.26□□□□□ -0.93
SF3B1-204ENST00000414963 COX17Q14061 63 aa9.26□□□□□ -0.93
SF3B1-204ENST00000414963 CARD19Q96LW7 228 aa9.26□□□□□ -0.93
SF3B1-204ENST00000414963 C6orf48Q9UBA6 75 aa9.26□□□□□ -0.93
SF3B1-204ENST00000414963 UQCR10Q9UDW1 63 aa9.26□□□□□ -0.93
SF3B1-204ENST00000414963 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.25□□□□□ -0.93
SF3B1-204ENST00000414963 MIEN1Q9BRT3 115 aa9.25□□□□□ -0.93
SF3B1-204ENST00000414963 FRAS1Q86XX4 4008 aa9.24□□□□□ -0.93
SF3B1-204ENST00000414963 SCGB1D4Q6XE38 83 aa9.24□□□□□ -0.93
SF3B1-204ENST00000414963 PRO1933Q9H354 126 aa9.24□□□□□ -0.93
SF3B1-204ENST00000414963 HIGD1BQ9P298 99 aa9.24□□□□□ -0.93
SF3B1-204ENST00000414963 ERG28Q9UKR5 140 aa9.24□□□□□ -0.93
SF3B1-204ENST00000414963 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.23□□□□□ -0.93
SF3B1-204ENST00000414963 TSTD3H0UI37 97 aa9.23□□□□□ -0.93
SF3B1-204ENST00000414963 TLX1NBP0CAT3 122 aa9.23□□□□□ -0.93
SF3B1-204ENST00000414963 CIRBPQ14011 172 aaKnown RBP9.23□□□□□ -0.93
SF3B1-204ENST00000414963 C9orf163Q8N9P6 203 aa9.23□□□□□ -0.93
SF3B1-204ENST00000414963 LITAFQ99732 161 aa9.23□□□□□ -0.93
SF3B1-204ENST00000414963 C9orf116Q5BN46 136 aaPredicted RBP9.22□□□□□ -0.93
SF3B1-204ENST00000414963 C2orf91Q6ZV80 131 aa9.22□□□□□ -0.93
SF3B1-204ENST00000414963 TP73-AS1Q9UF72 201 aa9.22□□□□□ -0.93
SF3B1-204ENST00000414963 FAT2Q9NYQ8 4349 aa9.22□□□□□ -0.93
SF3B1-204ENST00000414963 SMIM13P0DJ93 91 aa9.21□□□□□ -0.94
SF3B1-204ENST00000414963 MEIG1Q5JSS6 88 aa9.21□□□□□ -0.94
SF3B1-204ENST00000414963 ADAMTSL4-AS1Q5T5F5 129 aa9.21□□□□□ -0.94
SF3B1-204ENST00000414963 PGPEP1Q9NXJ5 209 aa9.21□□□□□ -0.94
SF3B1-204ENST00000414963 NDUFC2-KCTD14E9PQ53 114 aa9.2□□□□□ -0.94
SF3B1-204ENST00000414963 PFN2P35080 140 aa9.2□□□□□ -0.94
SF3B1-204ENST00000414963 LINC00158P58513 81 aa9.2□□□□□ -0.94
SF3B1-204ENST00000414963 Q6ZVH6 145 aa9.2□□□□□ -0.94
SF3B1-204ENST00000414963 SPANXB1Q9NS25 103 aaPredicted RBP9.2□□□□□ -0.94
SF3B1-204ENST00000414963 TMEM238C9JI98 176 aa9.19□□□□□ -0.94
SF3B1-204ENST00000414963 SPANXDQ9BXN6 97 aa9.19□□□□□ -0.94
SF3B1-204ENST00000414963 SPANXCQ9NY87 97 aa9.19□□□□□ -0.94
SF3B1-204ENST00000414963 PKIGQ9Y2B9 76 aa9.19□□□□□ -0.94
SF3B1-204ENST00000414963 LOC107984640A0A0U1RRK4 108 aa9.18□□□□□ -0.94
SF3B1-204ENST00000414963 PTTG1IPP53801 180 aa9.18□□□□□ -0.94
SF3B1-204ENST00000414963 SDIM1Q6ZPB5 146 aa9.18□□□□□ -0.94
SF3B1-204ENST00000414963 PPDPFQ9H3Y8 114 aa9.18□□□□□ -0.94
SF3B1-204ENST00000414963 IGLV5-52A0A0A0MRZ9 124 aa9.17□□□□□ -0.94
SF3B1-204ENST00000414963 LOC107984156A0A0G2JMH3 177 aa9.17□□□□□ -0.94
SF3B1-204ENST00000414963 KRTAP10-2P60368 255 aa9.17□□□□□ -0.94
SF3B1-204ENST00000414963 Q6ZRP5 223 aa9.17□□□□□ -0.94
SF3B1-204ENST00000414963 ARL17AQ8IVW1 177 aa9.17□□□□□ -0.94
SF3B1-204ENST00000414963 MIR7-3HGQ8N6C7 128 aa9.17□□□□□ -0.94
SF3B1-204ENST00000414963 DNAH11Q96DT5 4516 aa9.17□□□□□ -0.94
SF3B1-204ENST00000414963 A0A0U1RRA0 63 aa9.16□□□□□ -0.94
SF3B1-204ENST00000414963 A0A1B0GVY2 172 aa9.16□□□□□ -0.94
SF3B1-204ENST00000414963 HNRNPA3P51991 378 aaKnown RBP9.16□□□□□ -0.94
SF3B1-204ENST00000414963 TAL2Q16559 108 aa9.16□□□□□ -0.94
SF3B1-204ENST00000414963 IFITM1P13164 125 aa9.15□□□□□ -0.94
SF3B1-204ENST00000414963 SRSF9Q13242 221 aaKnown RBP eCLIP9.15□□□□□ -0.94
SF3B1-204ENST00000414963 SND1-IT1Q9HBX3 110 aa9.15□□□□□ -0.94
SF3B1-204ENST00000414963 PKD1P98161 4303 aa9.14□□□□□ -0.95
SF3B1-204ENST00000414963 C16orf90A8MZG2 172 aa9.14□□□□□ -0.95
SF3B1-204ENST00000414963 GCSHP23434 173 aa9.14□□□□□ -0.95
SF3B1-204ENST00000414963 DAND5Q8N907 189 aa9.14□□□□□ -0.95
SF3B1-204ENST00000414963 LINC00308Q8TCZ7 52 aa9.14□□□□□ -0.95
SF3B1-204ENST00000414963 COPS9Q8WXC6 57 aa9.14□□□□□ -0.95
SF3B1-204ENST00000414963 DDTP30046 118 aa9.13□□□□□ -0.95
SF3B1-204ENST00000414963 FUSP35637 526 aaKnown RBP eCLIP9.13□□□□□ -0.95
SF3B1-204ENST00000414963 HIST1H4GQ99525 98 aa9.13□□□□□ -0.95
SF3B1-204ENST00000414963 HECTD4Q9Y4D8 3996 aa9.13□□□□□ -0.95
SF3B1-204ENST00000414963 RYR3Q15413 4870 aa9.12□□□□□ -0.95
SF3B1-204ENST00000414963 EIF4EBP3O60516 100 aaPredicted RBP9.12□□□□□ -0.95
SF3B1-204ENST00000414963 RPL18AQ02543 176 aaKnown RBP9.12□□□□□ -0.95
SF3B1-204ENST00000414963 HSD52Q0P140 79 aa9.12□□□□□ -0.95
SF3B1-204ENST00000414963 LINC01620Q4KN68 170 aa9.12□□□□□ -0.95
SF3B1-204ENST00000414963 GAGE2EQ4V326 116 aa9.12□□□□□ -0.95
SF3B1-204ENST00000414963 SOSTDC1Q6X4U4 206 aa9.12□□□□□ -0.95
SF3B1-204ENST00000414963 MUSTN1Q8IVN3 82 aa9.12□□□□□ -0.95
SF3B1-204ENST00000414963 GAGE2DQ9UEU5 116 aa9.12□□□□□ -0.95
SF3B1-204ENST00000414963 A0A096LNI7 61 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms