RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 SPATA45Q537H7 98 aa13.34□□□□□ -0.27
VSX1-203ENST00000409285 C6orf226Q5I0X4 101 aa13.34□□□□□ -0.27
VSX1-203ENST00000409285 SFTA2Q6UW10 78 aa13.34□□□□□ -0.27
VSX1-203ENST00000409285 SLPIP03973 132 aa13.33□□□□□ -0.28
VSX1-203ENST00000409285 ANKRD39Q53RE8 183 aa13.33□□□□□ -0.28
VSX1-203ENST00000409285 PLEKHB2Q96CS7 222 aa13.33□□□□□ -0.28
VSX1-203ENST00000409285 LINC00526Q96FQ7 95 aa13.33□□□□□ -0.28
VSX1-203ENST00000409285 A0A1B0GVY2 172 aa13.32□□□□□ -0.28
VSX1-203ENST00000409285 NDUFA1O15239 70 aa13.32□□□□□ -0.28
VSX1-203ENST00000409285 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.31□□□□□ -0.28
VSX1-203ENST00000409285 CKS1BP61024 79 aa13.31□□□□□ -0.28
VSX1-203ENST00000409285 CAMK2N2Q96S95 79 aa13.31□□□□□ -0.28
VSX1-203ENST00000409285 DNAH5Q8TE73 4624 aa13.3□□□□□ -0.28
VSX1-203ENST00000409285 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.3□□□□□ -0.28
VSX1-203ENST00000409285 SYCNQ0VAF6 134 aa13.3□□□□□ -0.28
VSX1-203ENST00000409285 J3QQQ9 107 aa13.29□□□□□ -0.28
VSX1-203ENST00000409285 TSPEAR-AS2P59090 65 aa13.29□□□□□ -0.28
VSX1-203ENST00000409285 ZNF625Q96I27 306 aaPredicted RBP13.29□□□□□ -0.28
VSX1-203ENST00000409285 CARD19Q96LW7 228 aa13.29□□□□□ -0.28
VSX1-203ENST00000409285 TRBV30A0A0K0K1B3 111 aa13.29□□□□□ -0.28
VSX1-203ENST00000409285 NMUP48645 174 aa13.29□□□□□ -0.28
VSX1-203ENST00000409285 RNF151Q2KHN1 245 aa13.29□□□□□ -0.28
VSX1-203ENST00000409285 C2orf82Q6UX34 121 aa13.29□□□□□ -0.28
VSX1-203ENST00000409285 PGPEP1Q9NXJ5 209 aa13.29□□□□□ -0.28
VSX1-203ENST00000409285 KRTAP10-2P60368 255 aa13.28□□□□□ -0.28
VSX1-203ENST00000409285 Q6ZRU5 148 aa13.28□□□□□ -0.28
VSX1-203ENST00000409285 IGKV2D-26A0A0A0MRZ7 120 aa13.27□□□□□ -0.29
VSX1-203ENST00000409285 UNQ6190/PRO20217Q6UXQ8 127 aa13.27□□□□□ -0.29
VSX1-203ENST00000409285 C9orf163Q8N9P6 203 aa13.27□□□□□ -0.29
VSX1-203ENST00000409285 C10orf25Q5T742 122 aa13.26□□□□□ -0.29
VSX1-203ENST00000409285 IGLV5-52A0A0A0MRZ9 124 aa13.25□□□□□ -0.29
VSX1-203ENST00000409285 LGALS3P17931 250 aaKnown RBP13.25□□□□□ -0.29
VSX1-203ENST00000409285 C6orf48Q9UBA6 75 aa13.25□□□□□ -0.29
VSX1-203ENST00000409285 NDUFA12Q9UI09 145 aa13.25□□□□□ -0.29
VSX1-203ENST00000409285 PRO1933Q9H354 126 aa13.24□□□□□ -0.29
VSX1-203ENST00000409285 MYMXA0A1B0GTQ4 84 aa13.23□□□□□ -0.29
VSX1-203ENST00000409285 HERV-K104P63124 156 aa13.23□□□□□ -0.29
VSX1-203ENST00000409285 C14orf144Q96I85 54 aa13.23□□□□□ -0.29
VSX1-203ENST00000409285 PKIGQ9Y2B9 76 aa13.23□□□□□ -0.29
VSX1-203ENST00000409285 TLX1NBP0CAT3 122 aa13.22□□□□□ -0.29
VSX1-203ENST00000409285 PCP2Q8IVA1 136 aa13.22□□□□□ -0.29
VSX1-203ENST00000409285 BIRC6Q9NR09 4857 aa13.21□□□□□ -0.29
VSX1-203ENST00000409285 TTTY13Q9BZ97 58 aa13.21□□□□□ -0.3
VSX1-203ENST00000409285 COX8AP10176 69 aa13.2□□□□□ -0.3
VSX1-203ENST00000409285 TSTD3H0UI37 97 aa13.19□□□□□ -0.3
VSX1-203ENST00000409285 COX17Q14061 63 aa13.19□□□□□ -0.3
VSX1-203ENST00000409285 FUSP35637 526 aaKnown RBP eCLIP13.18□□□□□ -0.3
VSX1-203ENST00000409285 SLC25A34Q6PIV7 304 aa13.18□□□□□ -0.3
VSX1-203ENST00000409285 ZNF815PA8K554 130 aa13.17□□□□□ -0.3
VSX1-203ENST00000409285 TP73-AS1Q9UF72 201 aa13.17□□□□□ -0.3
VSX1-203ENST00000409285 ERG28Q9UKR5 140 aa13.17□□□□□ -0.3
VSX1-203ENST00000409285 LOC107984640A0A0U1RRK4 108 aa13.16□□□□□ -0.3
VSX1-203ENST00000409285 LINC00587B1AMM8 73 aa13.16□□□□□ -0.3
VSX1-203ENST00000409285 NDUFC2-KCTD14E9PQ53 114 aa13.16□□□□□ -0.3
VSX1-203ENST00000409285 GCSHP23434 173 aa13.16□□□□□ -0.3
VSX1-203ENST00000409285 C9orf116Q5BN46 136 aaPredicted RBP13.16□□□□□ -0.3
VSX1-203ENST00000409285 SDIM1Q6ZPB5 146 aa13.16□□□□□ -0.3
VSX1-203ENST00000409285 UQCR10Q9UDW1 63 aa13.16□□□□□ -0.3
VSX1-203ENST00000409285 DYNC1H1Q14204 4646 aaKnown RBP13.16□□□□□ -0.3
VSX1-203ENST00000409285 BOD1L2Q8IYS8 172 aa13.16□□□□□ -0.3
VSX1-203ENST00000409285 A0A0J9YXY3 114 aa13.14□□□□□ -0.31
VSX1-203ENST00000409285 LINC01620Q4KN68 170 aa13.14□□□□□ -0.31
VSX1-203ENST00000409285 DLEU1O43261 78 aa13.13□□□□□ -0.31
VSX1-203ENST00000409285 MIEN1Q9BRT3 115 aa13.13□□□□□ -0.31
VSX1-203ENST00000409285 C16orf90A8MZG2 172 aa13.12□□□□□ -0.31
VSX1-203ENST00000409285 Q6ZRP5 223 aa13.12□□□□□ -0.31
VSX1-203ENST00000409285 TIMM17BO60830 172 aa13.11□□□□□ -0.31
VSX1-203ENST00000409285 MEIG1Q5JSS6 88 aa13.11□□□□□ -0.31
VSX1-203ENST00000409285 LRP1BQ9NZR2 4599 aa13.11□□□□□ -0.31
VSX1-203ENST00000409285 PFN2P35080 140 aa13.1□□□□□ -0.31
VSX1-203ENST00000409285 PTTG1IPP53801 180 aa13.1□□□□□ -0.31
VSX1-203ENST00000409285 RPL18AQ02543 176 aaKnown RBP13.1□□□□□ -0.31
VSX1-203ENST00000409285 DNAH8Q96JB1 4490 aa13.1□□□□□ -0.31
VSX1-203ENST00000409285 A0A096LNI7 61 aa13.1□□□□□ -0.31
VSX1-203ENST00000409285 CIRBPQ14011 172 aaKnown RBP13.1□□□□□ -0.31
VSX1-203ENST00000409285 SCGB1D4Q6XE38 83 aa13.1□□□□□ -0.31
VSX1-203ENST00000409285 LINC00474Q9P2X8 69 aa13.1□□□□□ -0.31
VSX1-203ENST00000409285 SMIM13P0DJ93 91 aa13.09□□□□□ -0.31
VSX1-203ENST00000409285 KRTAP10-1P60331 282 aa13.09□□□□□ -0.31
VSX1-203ENST00000409285 Q6ZSA8 131 aa13.09□□□□□ -0.31
VSX1-203ENST00000409285 HNRNPA3P51991 378 aaKnown RBP13.08□□□□□ -0.32
VSX1-203ENST00000409285 LITAFQ99732 161 aa13.08□□□□□ -0.32
VSX1-203ENST00000409285 PCP4L1A6NKN8 68 aa13.07□□□□□ -0.32
VSX1-203ENST00000409285 LINC00158P58513 81 aa13.07□□□□□ -0.32
VSX1-203ENST00000409285 C2orf91Q6ZV80 131 aa13.06□□□□□ -0.32
VSX1-203ENST00000409285 TMEM238C9JI98 176 aa13.05□□□□□ -0.32
VSX1-203ENST00000409285 DDTP30046 118 aa13.05□□□□□ -0.32
VSX1-203ENST00000409285 GAGE2BQ13066 116 aa13.05□□□□□ -0.32
VSX1-203ENST00000409285 SPACA4Q8TDM5 124 aa13.05□□□□□ -0.32
VSX1-203ENST00000409285 GAGE2EQ4V326 116 aa13.04□□□□□ -0.32
VSX1-203ENST00000409285 MIR7-3HGQ8N6C7 128 aa13.04□□□□□ -0.32
VSX1-203ENST00000409285 SND1-IT1Q9HBX3 110 aa13.04□□□□□ -0.32
VSX1-203ENST00000409285 GAGE2DQ9UEU5 116 aa13.04□□□□□ -0.32
VSX1-203ENST00000409285 ADAMTSL4-AS1Q5T5F5 129 aa13.04□□□□□ -0.32
VSX1-203ENST00000409285 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.04□□□□□ -0.32
VSX1-203ENST00000409285 IGKV2-24A0A0C4DH68 120 aa13.03□□□□□ -0.32
VSX1-203ENST00000409285 LOC107984156A0A0G2JMH3 177 aa13.03□□□□□ -0.32
VSX1-203ENST00000409285 A0A0U1RRA0 63 aa13.03□□□□□ -0.32
VSX1-203ENST00000409285 CHTF8P0CG12 524 aa13.03□□□□□ -0.32
VSX1-203ENST00000409285 C9orf129Q5T035 196 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms