RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 TLX1NBP0CAT3 122 aa11.86□□□□□ -0.51
SMARCB1-204ENST00000407422 Q6ZN92 141 aa11.86□□□□□ -0.51
SMARCB1-204ENST00000407422 VCX2Q9H322 139 aa11.86□□□□□ -0.51
SMARCB1-204ENST00000407422 NXT2Q9NPJ8 142 aaKnown RBP11.86□□□□□ -0.51
SMARCB1-204ENST00000407422 MT-ND6P03923 174 aa11.86□□□□□ -0.51
SMARCB1-204ENST00000407422 S100A2P29034 98 aa11.86□□□□□ -0.51
SMARCB1-204ENST00000407422 DDTP30046 118 aa11.86□□□□□ -0.51
SMARCB1-204ENST00000407422 GAGE2EQ4V326 116 aa11.86□□□□□ -0.51
SMARCB1-204ENST00000407422 REG3GQ6UW15 175 aa11.86□□□□□ -0.51
SMARCB1-204ENST00000407422 GAGE2DQ9UEU5 116 aa11.86□□□□□ -0.51
SMARCB1-204ENST00000407422 TSTD3H0UI37 97 aa11.85□□□□□ -0.51
SMARCB1-204ENST00000407422 K7EMI3 77 aa11.85□□□□□ -0.51
SMARCB1-204ENST00000407422 PYY3Q5JQD4 70 aa11.84□□□□□ -0.51
SMARCB1-204ENST00000407422 KRTAP10-8P60410 259 aa11.83□□□□□ -0.52
SMARCB1-204ENST00000407422 KRTAP11-1Q8IUC1 163 aa11.83□□□□□ -0.52
SMARCB1-204ENST00000407422 NPSP0C0P6 89 aa11.82□□□□□ -0.52
SMARCB1-204ENST00000407422 C1orf137Q5JT78 98 aa11.82□□□□□ -0.52
SMARCB1-204ENST00000407422 FAM19A5Q7Z5A7 132 aaPredicted RBP11.82□□□□□ -0.52
SMARCB1-204ENST00000407422 KRTAP7-1Q8IUC3 87 aa11.82□□□□□ -0.52
SMARCB1-204ENST00000407422 LINC01561Q8N1V8 128 aa11.82□□□□□ -0.52
SMARCB1-204ENST00000407422 TRBV30A0A0K0K1B3 111 aa11.82□□□□□ -0.52
SMARCB1-204ENST00000407422 LRP2P98164 4655 aa11.82□□□□□ -0.52
SMARCB1-204ENST00000407422 FAM19A3Q7Z5A8 133 aa11.81□□□□□ -0.52
SMARCB1-204ENST00000407422 PCP4P48539 62 aa11.8□□□□□ -0.52
SMARCB1-204ENST00000407422 TOMM6Q96B49 74 aa11.8□□□□□ -0.52
SMARCB1-204ENST00000407422 TOMM7Q9P0U1 55 aa11.8□□□□□ -0.52
SMARCB1-204ENST00000407422 TRAV9-1A0A075B6T8 112 aa11.79□□□□□ -0.52
SMARCB1-204ENST00000407422 NDUFC2-KCTD14E9PQ53 114 aa11.79□□□□□ -0.52
SMARCB1-204ENST00000407422 RHEBQ15382 184 aa11.79□□□□□ -0.52
SMARCB1-204ENST00000407422 PACRGQ96M98 296 aaPredicted RBP11.79□□□□□ -0.52
SMARCB1-204ENST00000407422 TIMM17AQ99595 171 aa11.78□□□□□ -0.52
SMARCB1-204ENST00000407422 CDKN2A-AS1Q9UH64 79 aa11.78□□□□□ -0.52
SMARCB1-204ENST00000407422 C9orf129Q5T035 196 aaKnown RBP11.78□□□□□ -0.52
SMARCB1-204ENST00000407422 PRSS2P07478 247 aa11.77□□□□□ -0.53
SMARCB1-204ENST00000407422 G0S2P27469 103 aa11.77□□□□□ -0.53
SMARCB1-204ENST00000407422 PAPPA-AS1Q5QFB9 102 aa11.77□□□□□ -0.53
SMARCB1-204ENST00000407422 GNB1LQ9BYB4 327 aa11.77□□□□□ -0.53
SMARCB1-204ENST00000407422 RPS10P5Q9NQ39 176 aa11.77□□□□□ -0.53
SMARCB1-204ENST00000407422 CKS1BP61024 79 aa11.76□□□□□ -0.53
SMARCB1-204ENST00000407422 HERVK_113P63121 156 aa11.76□□□□□ -0.53
SMARCB1-204ENST00000407422 C6orf226Q5I0X4 101 aa11.76□□□□□ -0.53
SMARCB1-204ENST00000407422 M0QXV9 152 aa11.75□□□□□ -0.53
SMARCB1-204ENST00000407422 IGLV7-43P04211 117 aa11.75□□□□□ -0.53
SMARCB1-204ENST00000407422 LINC00614P0C842 121 aa11.75□□□□□ -0.53
SMARCB1-204ENST00000407422 ERASQ7Z444 233 aa11.75□□□□□ -0.53
SMARCB1-204ENST00000407422 Q8IZM0 81 aa11.75□□□□□ -0.53
SMARCB1-204ENST00000407422 SCGB3A1Q96QR1 104 aa11.75□□□□□ -0.53
SMARCB1-204ENST00000407422 ALKBH7Q9BT30 221 aaPredicted RBP11.75□□□□□ -0.53
SMARCB1-204ENST00000407422 GEMIN7Q9H840 131 aaKnown RBP11.75□□□□□ -0.53
SMARCB1-204ENST00000407422 SEC11AP67812 179 aa11.75□□□□□ -0.53
SMARCB1-204ENST00000407422 YPEL4Q96NS1 127 aa11.75□□□□□ -0.53
SMARCB1-204ENST00000407422 LINC01546A6NGU7 62 aa11.73□□□□□ -0.53
SMARCB1-204ENST00000407422 UBE2BP63146 152 aa11.71□□□□□ -0.53
SMARCB1-204ENST00000407422 C21orf62-AS1Q17RA5 79 aa11.71□□□□□ -0.54
SMARCB1-204ENST00000407422 DIRC1Q969H9 104 aa11.71□□□□□ -0.54
SMARCB1-204ENST00000407422 MRPL18Q9H0U6 180 aaKnown RBP11.71□□□□□ -0.54
SMARCB1-204ENST00000407422 HIST3H2BBQ8N257 126 aa11.7□□□□□ -0.54
SMARCB1-204ENST00000407422 XAGE1AQ9HD64 81 aa11.7□□□□□ -0.54
SMARCB1-204ENST00000407422 SMIM1B2RUZ4 78 aa11.69□□□□□ -0.54
SMARCB1-204ENST00000407422 F8VRH5 84 aa11.69□□□□□ -0.54
SMARCB1-204ENST00000407422 CST9LQ9H4G1 147 aa11.69□□□□□ -0.54
SMARCB1-204ENST00000407422 TINCRA0A1B0GVN0 87 aa11.68□□□□□ -0.54
SMARCB1-204ENST00000407422 NDUFA6P56556 154 aa11.68□□□□□ -0.54
SMARCB1-204ENST00000407422 H0Y9J4 135 aa11.68□□□□□ -0.54
SMARCB1-204ENST00000407422 COX19Q49B96 90 aa11.68□□□□□ -0.54
SMARCB1-204ENST00000407422 FA2HQ7L5A8 372 aa11.68□□□□□ -0.54
SMARCB1-204ENST00000407422 IGLV5-45A0A087WSX0 123 aa11.67□□□□□ -0.54
SMARCB1-204ENST00000407422 DLEU1O43261 78 aa11.67□□□□□ -0.54
SMARCB1-204ENST00000407422 JOSD1Q15040 202 aaPredicted RBP11.67□□□□□ -0.54
SMARCB1-204ENST00000407422 SVIPQ8NHG7 77 aa11.67□□□□□ -0.54
SMARCB1-204ENST00000407422 PRR26Q8N8Z3 221 aa11.66□□□□□ -0.54
SMARCB1-204ENST00000407422 C22orf24Q9Y442 160 aa11.66□□□□□ -0.54
SMARCB1-204ENST00000407422 RNF213Q63HN8 5207 aa11.65□□□□□ -0.54
SMARCB1-204ENST00000407422 LINC01549A6NIU2 74 aa11.65□□□□□ -0.54
SMARCB1-204ENST00000407422 PDZD11Q5EBL8 140 aa11.65□□□□□ -0.54
SMARCB1-204ENST00000407422 COX7B2Q8TF08 81 aa11.65□□□□□ -0.54
SMARCB1-204ENST00000407422 SPINK8P0C7L1 97 aa11.64□□□□□ -0.55
SMARCB1-204ENST00000407422 CXCL5P42830 114 aa11.64□□□□□ -0.55
SMARCB1-204ENST00000407422 PMVKQ15126 192 aa11.64□□□□□ -0.55
SMARCB1-204ENST00000407422 PRO1933Q9H354 126 aa11.64□□□□□ -0.55
SMARCB1-204ENST00000407422 M0R143 59 aa11.64□□□□□ -0.55
SMARCB1-204ENST00000407422 A0A096LNJ9 63 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST1H2BKO60814 126 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST1H2BJP06899 126 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 KRTAP1-4P0C5Y4 121 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST1H2BOP23527 126 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST1H2BBP33778 126 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST1H2BDP58876 126 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST1H2BCP62807 126 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST2H2BEQ16778 126 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST1H2BHQ93079 126 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 URB1-AS1Q96HZ7 61 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST1H2BNQ99877 126 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 HIST1H2BMQ99879 126 aa11.62□□□□□ -0.55
SMARCB1-204ENST00000407422 TRAPPC1Q9Y5R8 145 aa11.6□□□□□ -0.55
SMARCB1-204ENST00000407422 C18orf32Q8TCD1 76 aa11.6□□□□□ -0.55
SMARCB1-204ENST00000407422 LPAP08519 4548 aa11.6□□□□□ -0.55
SMARCB1-204ENST00000407422 SNHG12Q9BXW3 62 aa11.59□□□□□ -0.55
SMARCB1-204ENST00000407422 PMCHL1Q16048 86 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms