RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 PLAC8L1A1L4L8 177 aa12.95□□□□□ -0.34
COL18A1-204ENST00000400337 CASC2Q6XLA1 102 aa12.95□□□□□ -0.34
COL18A1-204ENST00000400337 TRBV10-3A0A0K0K1G6 114 aa12.95□□□□□ -0.34
COL18A1-204ENST00000400337 WFDC13Q8IUB5 93 aa12.95□□□□□ -0.34
COL18A1-204ENST00000400337 ZNF706Q9Y5V0 76 aaPredicted RBP12.94□□□□□ -0.34
COL18A1-204ENST00000400337 SNURFQ9Y675 71 aa12.94□□□□□ -0.34
COL18A1-204ENST00000400337 IGLV9-49A0A0B4J1Y8 123 aa12.93□□□□□ -0.34
COL18A1-204ENST00000400337 FAM19A3Q7Z5A8 133 aa12.92□□□□□ -0.34
COL18A1-204ENST00000400337 C6orf223Q8N319 242 aa12.92□□□□□ -0.34
COL18A1-204ENST00000400337 RPL28P46779 137 aaKnown RBP12.92□□□□□ -0.34
COL18A1-204ENST00000400337 LINC00474Q9P2X8 69 aa12.92□□□□□ -0.34
COL18A1-204ENST00000400337 NTM-AS1Q6ZSK4 140 aa12.91□□□□□ -0.34
COL18A1-204ENST00000400337 M0QXV9 152 aa12.91□□□□□ -0.34
COL18A1-204ENST00000400337 Q8N814 137 aa12.9□□□□□ -0.34
COL18A1-204ENST00000400337 SPTSSBQ8NFR3 76 aa12.9□□□□□ -0.34
COL18A1-204ENST00000400337 CCDC179H3BU77 68 aa12.9□□□□□ -0.35
COL18A1-204ENST00000400337 KIF25-AS1Q9Y6Z4 181 aa12.89□□□□□ -0.35
COL18A1-204ENST00000400337 AGRNO00468 2067 aa12.89□□□□□ -0.35
COL18A1-204ENST00000400337 POLQO75417 2590 aa12.89□□□□□ -0.35
COL18A1-204ENST00000400337 A0A087WYN8 130 aa12.88□□□□□ -0.35
COL18A1-204ENST00000400337 NDUFC2-KCTD14E9PQ53 114 aa12.88□□□□□ -0.35
COL18A1-204ENST00000400337 Q6JHZ5 121 aa12.88□□□□□ -0.35
COL18A1-204ENST00000400337 A0A1B0GUV1 79 aa12.88□□□□□ -0.35
COL18A1-204ENST00000400337 COX7CP15954 63 aa12.88□□□□□ -0.35
COL18A1-204ENST00000400337 NUPR2A6NF83 97 aa12.88□□□□□ -0.35
COL18A1-204ENST00000400337 NDUFC1O43677 76 aa12.87□□□□□ -0.35
COL18A1-204ENST00000400337 LYPD5Q6UWN5 251 aa12.87□□□□□ -0.35
COL18A1-204ENST00000400337 FASNP49327 2511 aaKnown RBP12.86□□□□□ -0.35
COL18A1-204ENST00000400337 Q8N2B8 174 aa12.86□□□□□ -0.35
COL18A1-204ENST00000400337 SVIPQ8NHG7 77 aa12.86□□□□□ -0.35
COL18A1-204ENST00000400337 FAM240AA0A1B0GVK7 77 aa12.85□□□□□ -0.35
COL18A1-204ENST00000400337 C11orf72Q8NBR9 251 aa12.85□□□□□ -0.35
COL18A1-204ENST00000400337 TET2Q6N021 2002 aaPredicted RBP12.84□□□□□ -0.35
COL18A1-204ENST00000400337 PRR4Q16378 134 aa12.83□□□□□ -0.36
COL18A1-204ENST00000400337 REG3GQ6UW15 175 aa12.82□□□□□ -0.36
COL18A1-204ENST00000400337 ATP5EP56381 51 aaPredicted RBP12.82□□□□□ -0.36
COL18A1-204ENST00000400337 FAM30AQ9NZY2 134 aa12.81□□□□□ -0.36
COL18A1-204ENST00000400337 C1orf137Q5JT78 98 aa12.81□□□□□ -0.36
COL18A1-204ENST00000400337 C10orf25Q5T742 122 aa12.81□□□□□ -0.36
COL18A1-204ENST00000400337 Q6Q795 121 aa12.8□□□□□ -0.36
COL18A1-204ENST00000400337 LINC00315P59091 139 aa12.78□□□□□ -0.36
COL18A1-204ENST00000400337 FAM19A4Q96LR4 140 aa12.78□□□□□ -0.36
COL18A1-204ENST00000400337 CELA1Q9UNI1 258 aa12.78□□□□□ -0.36
COL18A1-204ENST00000400337 A0A087WVE0 104 aa12.77□□□□□ -0.36
COL18A1-204ENST00000400337 C2orf48Q96LS8 159 aa12.76□□□□□ -0.37
COL18A1-204ENST00000400337 ACANP16112 2415 aa12.76□□□□□ -0.37
COL18A1-204ENST00000400337 COL4A2P08572 1712 aa12.76□□□□□ -0.37
COL18A1-204ENST00000400337 A8MTW9 85 aa12.75□□□□□ -0.37
COL18A1-204ENST00000400337 Q6ZRU5 148 aa12.75□□□□□ -0.37
COL18A1-204ENST00000400337 A0A0U1RQV1 116 aa12.75□□□□□ -0.37
COL18A1-204ENST00000400337 Q8N9L7 120 aa12.74□□□□□ -0.37
COL18A1-204ENST00000400337 V9GYY9 64 aa12.74□□□□□ -0.37
COL18A1-204ENST00000400337 IGLV5-52A0A0A0MRZ9 124 aa12.74□□□□□ -0.37
COL18A1-204ENST00000400337 DNAH12Q6ZR08 3092 aa12.74□□□□□ -0.37
COL18A1-204ENST00000400337 LINC01561Q8N1V8 128 aa12.73□□□□□ -0.37
COL18A1-204ENST00000400337 LINC00337Q8N6G1 96 aa12.73□□□□□ -0.37
COL18A1-204ENST00000400337 LINC01546A6NGU7 62 aa12.73□□□□□ -0.37
COL18A1-204ENST00000400337 MRPL55Q7Z7F7 128 aaKnown RBP12.73□□□□□ -0.37
COL18A1-204ENST00000400337 FHL3Q13643 280 aa12.72□□□□□ -0.37
COL18A1-204ENST00000400337 F8WDY8 70 aa12.71□□□□□ -0.37
COL18A1-204ENST00000400337 TRAV7A0A075B6U4 112 aa12.71□□□□□ -0.37
COL18A1-204ENST00000400337 ANKRD17O75179 2603 aaKnown RBP12.7□□□□□ -0.38
COL18A1-204ENST00000400337 IGLV5-39A0A0G2JS06 123 aa12.7□□□□□ -0.38
COL18A1-204ENST00000400337 PTPRBP23467 1997 aa12.7□□□□□ -0.38
COL18A1-204ENST00000400337 CIRBP-AS1Q8TBR5 109 aa12.7□□□□□ -0.38
COL18A1-204ENST00000400337 IGHV3OR16-9A0A0B4J2B5 98 aa12.69□□□□□ -0.38
COL18A1-204ENST00000400337 LINC01556Q5JQF7 62 aa12.69□□□□□ -0.38
COL18A1-204ENST00000400337 PRR15LQ9BU68 103 aa12.69□□□□□ -0.38
COL18A1-204ENST00000400337 LINC00575Q6W349 94 aa12.69□□□□□ -0.38
COL18A1-204ENST00000400337 Q9BRP9 147 aa12.68□□□□□ -0.38
COL18A1-204ENST00000400337 Q9UF83 564 aa12.68□□□□□ -0.38
COL18A1-204ENST00000400337 PRYO14603 147 aa12.67□□□□□ -0.38
COL18A1-204ENST00000400337 NHLRC4P0CG21 123 aaPredicted RBP12.67□□□□□ -0.38
COL18A1-204ENST00000400337 EPG5Q9HCE0 2579 aa12.66□□□□□ -0.38
COL18A1-204ENST00000400337 UTRNP46939 3433 aa12.66□□□□□ -0.38
COL18A1-204ENST00000400337 Q8N3U1 123 aa12.65□□□□□ -0.38
COL18A1-204ENST00000400337 A6NED7 52 aa12.65□□□□□ -0.38
COL18A1-204ENST00000400337 ESRGQ1W209 222 aa12.65□□□□□ -0.38
COL18A1-204ENST00000400337 K7ERS5 55 aa12.64□□□□□ -0.39
COL18A1-204ENST00000400337 LINC00208Q96KT6 92 aa12.64□□□□□ -0.39
COL18A1-204ENST00000400337 A0A087WSZ3 146 aa12.64□□□□□ -0.39
COL18A1-204ENST00000400337 C1orf134Q5TEV5 83 aa12.64□□□□□ -0.39
COL18A1-204ENST00000400337 PRRC2CQ9Y520 2896 aaKnown RBP12.63□□□□□ -0.39
COL18A1-204ENST00000400337 PRLHP81277 87 aa12.63□□□□□ -0.39
COL18A1-204ENST00000400337 IGHV6-1A0A0B4J1U7 121 aa12.61□□□□□ -0.39
COL18A1-204ENST00000400337 LINC01547P58512 204 aaPredicted RBP12.61□□□□□ -0.39
COL18A1-204ENST00000400337 X6R8D5 127 aa12.61□□□□□ -0.39
COL18A1-204ENST00000400337 LINC00846Q9NV44 126 aa12.61□□□□□ -0.39
COL18A1-204ENST00000400337 C22orf24Q9Y442 160 aa12.61□□□□□ -0.39
COL18A1-204ENST00000400337 COL27A1Q8IZC6 1860 aaPredicted RBP12.6□□□□□ -0.39
COL18A1-204ENST00000400337 SMIM26A0A096LP01 95 aa12.6□□□□□ -0.39
COL18A1-204ENST00000400337 DEFB116Q30KQ4 102 aa12.6□□□□□ -0.39
COL18A1-204ENST00000400337 CEP350Q5VT06 3117 aa12.6□□□□□ -0.39
COL18A1-204ENST00000400337 Q6ZVQ6 151 aa12.59□□□□□ -0.39
COL18A1-204ENST00000400337 PCSK5Q92824 1860 aa12.58□□□□□ -0.4
COL18A1-204ENST00000400337 SERP1Q9Y6X1 66 aa12.58□□□□□ -0.4
COL18A1-204ENST00000400337 IGLV5-45A0A087WSX0 123 aa12.56□□□□□ -0.4
COL18A1-204ENST00000400337 C6orf48Q9UBA6 75 aa12.55□□□□□ -0.4
COL18A1-204ENST00000400337 SOSTDC1Q6X4U4 206 aa12.54□□□□□ -0.4
COL18A1-204ENST00000400337 KRTAP24-1Q3LI83 254 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms