RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CTAG1AP78358 180 aa9.46□□□□□ -0.9
SKA1-202ENST00000398452 SPAG11BQ08648 103 aa9.46□□□□□ -0.9
SKA1-202ENST00000398452 C14orf177Q52M58 125 aa9.46□□□□□ -0.9
SKA1-202ENST00000398452 SFTA2Q6UW10 78 aa9.46□□□□□ -0.9
SKA1-202ENST00000398452 Q8IZM0 81 aa9.46□□□□□ -0.9
SKA1-202ENST00000398452 IGLV5-39A0A0G2JS06 123 aa9.45□□□□□ -0.9
SKA1-202ENST00000398452 MYMXA0A1B0GTQ4 84 aa9.45□□□□□ -0.9
SKA1-202ENST00000398452 TSTD3H0UI37 97 aa9.45□□□□□ -0.9
SKA1-202ENST00000398452 Q6ZR54 194 aa9.45□□□□□ -0.9
SKA1-202ENST00000398452 ZNF815PA8K554 130 aa9.44□□□□□ -0.9
SKA1-202ENST00000398452 EIF4EBP3O60516 100 aaPredicted RBP9.44□□□□□ -0.9
SKA1-202ENST00000398452 KRTAP26-1Q6PEX3 210 aa9.44□□□□□ -0.9
SKA1-202ENST00000398452 USP17L23D6RBM5 183 aa9.43□□□□□ -0.9
SKA1-202ENST00000398452 SLC25A34Q6PIV7 304 aa9.43□□□□□ -0.9
SKA1-202ENST00000398452 SCGB1D4Q6XE38 83 aa9.43□□□□□ -0.9
SKA1-202ENST00000398452 C14orf144Q96I85 54 aa9.43□□□□□ -0.9
SKA1-202ENST00000398452 NDUFA12Q9UI09 145 aa9.43□□□□□ -0.9
SKA1-202ENST00000398452 IGKV2D-26A0A0A0MRZ7 120 aa9.42□□□□□ -0.9
SKA1-202ENST00000398452 KRTAP4-8A0A0G2JLE6 195 aa9.42□□□□□ -0.9
SKA1-202ENST00000398452 EREGO14944 169 aa9.42□□□□□ -0.9
SKA1-202ENST00000398452 COX8AP10176 69 aa9.42□□□□□ -0.9
SKA1-202ENST00000398452 HERV-K104P63124 156 aa9.42□□□□□ -0.9
SKA1-202ENST00000398452 HIGD2BQ4VC39 106 aa9.42□□□□□ -0.9
SKA1-202ENST00000398452 UQCR10Q9UDW1 63 aa9.42□□□□□ -0.9
SKA1-202ENST00000398452 LINC00587B1AMM8 73 aa9.41□□□□□ -0.9
SKA1-202ENST00000398452 F8WDY8 70 aa9.41□□□□□ -0.9
SKA1-202ENST00000398452 NDUFA1O15239 70 aa9.41□□□□□ -0.9
SKA1-202ENST00000398452 MEIG1Q5JSS6 88 aa9.41□□□□□ -0.9
SKA1-202ENST00000398452 CAMK2N2Q96S95 79 aa9.41□□□□□ -0.9
SKA1-202ENST00000398452 GVQW2A0A096LPI5 108 aaPredicted RBP9.4□□□□□ -0.9
SKA1-202ENST00000398452 LECT2O14960 151 aa9.4□□□□□ -0.9
SKA1-202ENST00000398452 CIRBPQ14011 172 aaKnown RBP9.4□□□□□ -0.9
SKA1-202ENST00000398452 PCP2Q8IVA1 136 aa9.4□□□□□ -0.9
SKA1-202ENST00000398452 C2orf48Q96LS8 159 aa9.4□□□□□ -0.9
SKA1-202ENST00000398452 PRO1933Q9H354 126 aa9.4□□□□□ -0.9
SKA1-202ENST00000398452 TSPEAR-AS2P59090 65 aa9.39□□□□□ -0.91
SKA1-202ENST00000398452 C15orf56Q8N910 161 aa9.39□□□□□ -0.91
SKA1-202ENST00000398452 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.38□□□□□ -0.91
SKA1-202ENST00000398452 DLEU1O43261 78 aa9.38□□□□□ -0.91
SKA1-202ENST00000398452 BOD1L2Q8IYS8 172 aa9.38□□□□□ -0.91
SKA1-202ENST00000398452 MAPKAPK5-AS1Q8N8E1 139 aa9.38□□□□□ -0.91
SKA1-202ENST00000398452 NTN5Q8WTR8 489 aaPredicted RBP9.37□□□□□ -0.91
SKA1-202ENST00000398452 TTTY13Q9BZ97 58 aa9.37□□□□□ -0.91
SKA1-202ENST00000398452 KMT2AQ03164 3969 aa9.37□□□□□ -0.91
SKA1-202ENST00000398452 HNRNPA3P51991 378 aaKnown RBP9.36□□□□□ -0.91
SKA1-202ENST00000398452 SYCNQ0VAF6 134 aa9.36□□□□□ -0.91
SKA1-202ENST00000398452 KIAA0087Q14695 138 aa9.36□□□□□ -0.91
SKA1-202ENST00000398452 C2orf82Q6UX34 121 aa9.36□□□□□ -0.91
SKA1-202ENST00000398452 Q6ZRN7 208 aaPredicted RBP9.36□□□□□ -0.91
SKA1-202ENST00000398452 LINC00526Q96FQ7 95 aa9.36□□□□□ -0.91
SKA1-202ENST00000398452 ZNF625Q96I27 306 aaPredicted RBP9.36□□□□□ -0.91
SKA1-202ENST00000398452 MIEN1Q9BRT3 115 aa9.36□□□□□ -0.91
SKA1-202ENST00000398452 TRBV30A0A0K0K1B3 111 aa9.35□□□□□ -0.91
SKA1-202ENST00000398452 TMEM238C9JI98 176 aa9.35□□□□□ -0.91
SKA1-202ENST00000398452 GCSHP23434 173 aa9.35□□□□□ -0.91
SKA1-202ENST00000398452 CARD19Q96LW7 228 aa9.35□□□□□ -0.91
SKA1-202ENST00000398452 A0A0J9YXY3 114 aa9.34□□□□□ -0.91
SKA1-202ENST00000398452 PKIGQ9Y2B9 76 aa9.34□□□□□ -0.91
SKA1-202ENST00000398452 A0A087WTM6 91 aa9.33□□□□□ -0.92
SKA1-202ENST00000398452 LINC00158P58513 81 aa9.33□□□□□ -0.92
SKA1-202ENST00000398452 SRSF9Q13242 221 aaKnown RBP eCLIP9.33□□□□□ -0.92
SKA1-202ENST00000398452 UNQ6190/PRO20217Q6UXQ8 127 aa9.33□□□□□ -0.92
SKA1-202ENST00000398452 ERG28Q9UKR5 140 aa9.33□□□□□ -0.92
SKA1-202ENST00000398452 FRAS1Q86XX4 4008 aa9.33□□□□□ -0.92
SKA1-202ENST00000398452 VPS13DQ5THJ4 4388 aa9.32□□□□□ -0.92
SKA1-202ENST00000398452 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.32□□□□□ -0.92
SKA1-202ENST00000398452 LRCOL1A6NCL2 159 aa9.32□□□□□ -0.92
SKA1-202ENST00000398452 PFN2P35080 140 aa9.32□□□□□ -0.92
SKA1-202ENST00000398452 COX17Q14061 63 aa9.32□□□□□ -0.92
SKA1-202ENST00000398452 COPS9Q8WXC6 57 aa9.32□□□□□ -0.92
SKA1-202ENST00000398452 A0A0U1RRA0 63 aa9.31□□□□□ -0.92
SKA1-202ENST00000398452 TIMM17BO60830 172 aa9.31□□□□□ -0.92
SKA1-202ENST00000398452 WFDC2Q14508 124 aa9.31□□□□□ -0.92
SKA1-202ENST00000398452 Q6ZRU5 148 aa9.31□□□□□ -0.92
SKA1-202ENST00000398452 Q8N814 137 aa9.31□□□□□ -0.92
SKA1-202ENST00000398452 HIGD1BQ9P298 99 aa9.31□□□□□ -0.92
SKA1-202ENST00000398452 SMIM13P0DJ93 91 aa9.3□□□□□ -0.92
SKA1-202ENST00000398452 RNF151Q2KHN1 245 aa9.3□□□□□ -0.92
SKA1-202ENST00000398452 HIST1H4GQ99525 98 aa9.3□□□□□ -0.92
SKA1-202ENST00000398452 CNBPP62633 177 aaKnown RBP9.29□□□□□ -0.92
SKA1-202ENST00000398452 C10orf25Q5T742 122 aa9.29□□□□□ -0.92
SKA1-202ENST00000398452 LINC00336Q6ZUF6 198 aa9.29□□□□□ -0.92
SKA1-202ENST00000398452 Q6ZVH6 145 aa9.29□□□□□ -0.92
SKA1-202ENST00000398452 C6orf48Q9UBA6 75 aa9.29□□□□□ -0.92
SKA1-202ENST00000398452 PCP4L1A6NKN8 68 aa9.28□□□□□ -0.92
SKA1-202ENST00000398452 DDTP30046 118 aa9.28□□□□□ -0.92
SKA1-202ENST00000398452 TP73-AS1Q9UF72 201 aa9.28□□□□□ -0.92
SKA1-202ENST00000398452 RTL8CO15255 209 aa9.27□□□□□ -0.93
SKA1-202ENST00000398452 SPANXB1Q9NS25 103 aaPredicted RBP9.27□□□□□ -0.93
SKA1-202ENST00000398452 LOC107984640A0A0U1RRK4 108 aa9.26□□□□□ -0.93
SKA1-202ENST00000398452 NDUFC2-KCTD14E9PQ53 114 aa9.26□□□□□ -0.93
SKA1-202ENST00000398452 RPL18AQ02543 176 aaKnown RBP9.26□□□□□ -0.93
SKA1-202ENST00000398452 HSD52Q0P140 79 aa9.26□□□□□ -0.93
SKA1-202ENST00000398452 TAL2Q16559 108 aa9.26□□□□□ -0.93
SKA1-202ENST00000398452 C9orf116Q5BN46 136 aaPredicted RBP9.26□□□□□ -0.93
SKA1-202ENST00000398452 C2orf91Q6ZV80 131 aa9.26□□□□□ -0.93
SKA1-202ENST00000398452 MIR7-3HGQ8N6C7 128 aa9.26□□□□□ -0.93
SKA1-202ENST00000398452 KRTAP17-1Q9BYP8 105 aa9.26□□□□□ -0.93
SKA1-202ENST00000398452 DNAH10Q8IVF4 4471 aa9.26□□□□□ -0.93
SKA1-202ENST00000398452 DNAH6Q9C0G6 4158 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 172.6 ms