RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 ATP5EP2Q5VTU8 51 aa6.92□□□□□ -1.3
COL17A1-203ENST00000393211 C2orf48Q96LS8 159 aa6.92□□□□□ -1.3
COL17A1-203ENST00000393211 PRO0255Q9UI72 69 aa6.92□□□□□ -1.3
COL17A1-203ENST00000393211 TMEM256-PLSCR3K7ERE1 68 aa6.91□□□□□ -1.3
COL17A1-203ENST00000393211 CD164L2Q6UWJ8 174 aa6.91□□□□□ -1.3
COL17A1-203ENST00000393211 LINC00846Q9NV44 126 aa6.91□□□□□ -1.3
COL17A1-203ENST00000393211 XCL1P47992 114 aa6.9□□□□□ -1.3
COL17A1-203ENST00000393211 C9orf129Q5T035 196 aaKnown RBP6.9□□□□□ -1.3
COL17A1-203ENST00000393211 Q8N814 137 aa6.9□□□□□ -1.3
COL17A1-203ENST00000393211 LYRM9A8MSI8 78 aa6.9□□□□□ -1.31
COL17A1-203ENST00000393211 NCR3O14931 201 aa6.9□□□□□ -1.31
COL17A1-203ENST00000393211 DEFB130BP0DP73 79 aa6.9□□□□□ -1.31
COL17A1-203ENST00000393211 DEFB130AP0DP74 79 aa6.9□□□□□ -1.31
COL17A1-203ENST00000393211 PLA2G2AP14555 144 aa6.9□□□□□ -1.31
COL17A1-203ENST00000393211 KIAA0087Q14695 138 aa6.9□□□□□ -1.31
COL17A1-203ENST00000393211 WFDC11Q8NEX6 87 aa6.9□□□□□ -1.31
COL17A1-203ENST00000393211 UTP20O75691 2785 aaKnown RBP6.9□□□□□ -1.31
COL17A1-203ENST00000393211 ZANQ9Y493 2812 aa6.89□□□□□ -1.31
COL17A1-203ENST00000393211 NANOS2P60321 138 aaKnown RBP6.89□□□□□ -1.31
COL17A1-203ENST00000393211 SERP2Q8N6R1 65 aa6.89□□□□□ -1.31
COL17A1-203ENST00000393211 FBN2P35556 2912 aa6.89□□□□□ -1.31
COL17A1-203ENST00000393211 MAP1AP78559 2803 aaPredicted RBP6.89□□□□□ -1.31
COL17A1-203ENST00000393211 MYO9AB2RTY4 2548 aa6.88□□□□□ -1.31
COL17A1-203ENST00000393211 H3BQ85 93 aa6.88□□□□□ -1.31
COL17A1-203ENST00000393211 X6R8D5 127 aa6.88□□□□□ -1.31
COL17A1-203ENST00000393211 TRBV10-3A0A0K0K1G6 114 aa6.87□□□□□ -1.31
COL17A1-203ENST00000393211 SLPIP03973 132 aa6.87□□□□□ -1.31
COL17A1-203ENST00000393211 RPS28P62857 69 aaKnown RBP6.87□□□□□ -1.31
COL17A1-203ENST00000393211 LYPD5Q6UWN5 251 aa6.87□□□□□ -1.31
COL17A1-203ENST00000393211 TENM4Q6N022 2769 aa6.87□□□□□ -1.31
COL17A1-203ENST00000393211 MYO18BQ8IUG5 2567 aa6.87□□□□□ -1.31
COL17A1-203ENST00000393211 TEX15Q9BXT5 2789 aa6.87□□□□□ -1.31
COL17A1-203ENST00000393211 NAV2Q8IVL1 2488 aa6.87□□□□□ -1.31
COL17A1-203ENST00000393211 IGKV3D-7A0A0C4DH55 119 aa6.87□□□□□ -1.31
COL17A1-203ENST00000393211 HILS1P60008 231 aa6.87□□□□□ -1.31
COL17A1-203ENST00000393211 KRTAP1-1Q07627 177 aa6.87□□□□□ -1.31
COL17A1-203ENST00000393211 CHCHD10Q8WYQ3 142 aaPredicted RBP6.87□□□□□ -1.31
COL17A1-203ENST00000393211 C11orf68Q9H3H3 251 aaKnown RBP6.87□□□□□ -1.31
COL17A1-203ENST00000393211 USP17L23D6RBM5 183 aa6.85□□□□□ -1.31
COL17A1-203ENST00000393211 LINC00269Q8N2A0 174 aa6.85□□□□□ -1.31
COL17A1-203ENST00000393211 C3orf56Q8N813 242 aa6.85□□□□□ -1.31
COL17A1-203ENST00000393211 UBR5O95071 2799 aaPredicted RBP6.85□□□□□ -1.31
COL17A1-203ENST00000393211 POLQO75417 2590 aa6.85□□□□□ -1.31
COL17A1-203ENST00000393211 hADV29S1A0JD25 119 aa6.84□□□□□ -1.31
COL17A1-203ENST00000393211 J3KT08 172 aa6.84□□□□□ -1.31
COL17A1-203ENST00000393211 TMEM258P61165 79 aa6.84□□□□□ -1.31
COL17A1-203ENST00000393211 REG3AQ06141 175 aa6.84□□□□□ -1.31
COL17A1-203ENST00000393211 LINC00575Q6W349 94 aa6.84□□□□□ -1.31
COL17A1-203ENST00000393211 LINC00482Q8N8I6 264 aa6.84□□□□□ -1.31
COL17A1-203ENST00000393211 WNK1Q9H4A3 2382 aa6.84□□□□□ -1.31
COL17A1-203ENST00000393211 PTPN13Q12923 2485 aa6.84□□□□□ -1.31
COL17A1-203ENST00000393211 BCE1O60756 84 aa6.83□□□□□ -1.32
COL17A1-203ENST00000393211 UBL5Q9BZL1 73 aa6.83□□□□□ -1.32
COL17A1-203ENST00000393211 GCN1Q92616 2671 aaKnown RBP6.83□□□□□ -1.32
COL17A1-203ENST00000393211 LOC110117498A0A087WWA1 95 aa6.83□□□□□ -1.32
COL17A1-203ENST00000393211 A0A0J9YWU9 116 aa6.83□□□□□ -1.32
COL17A1-203ENST00000393211 ANGP03950 147 aaKnown RBP6.83□□□□□ -1.32
COL17A1-203ENST00000393211 IGHV4-30-4P0DP06 118 aa6.83□□□□□ -1.32
COL17A1-203ENST00000393211 PDE6GP18545 87 aa6.83□□□□□ -1.32
COL17A1-203ENST00000393211 CLPSL2Q6UWE3 100 aa6.83□□□□□ -1.32
COL17A1-203ENST00000393211 UPK3BQ9BT76 320 aa6.83□□□□□ -1.32
COL17A1-203ENST00000393211 NOTCH3Q9UM47 2321 aa6.82□□□□□ -1.32
COL17A1-203ENST00000393211 FASNP49327 2511 aaKnown RBP6.82□□□□□ -1.32
COL17A1-203ENST00000393211 ZNF561-AS1K7EIQ3 104 aa6.82□□□□□ -1.32
COL17A1-203ENST00000393211 PRR3P79522 188 aaKnown RBP6.82□□□□□ -1.32
COL17A1-203ENST00000393211 C6orf99Q4VX62 202 aa6.82□□□□□ -1.32
COL17A1-203ENST00000393211 GVQW2A0A096LPI5 108 aaPredicted RBP6.81□□□□□ -1.32
COL17A1-203ENST00000393211 GHRHP01286 108 aa6.81□□□□□ -1.32
COL17A1-203ENST00000393211 RBM3P98179 157 aaKnown RBP6.81□□□□□ -1.32
COL17A1-203ENST00000393211 C6orf223Q8N319 242 aa6.81□□□□□ -1.32
COL17A1-203ENST00000393211 HELZ2Q9BYK8 2649 aaKnown RBP6.81□□□□□ -1.32
COL17A1-203ENST00000393211 A0A087WVE0 104 aa6.8□□□□□ -1.32
COL17A1-203ENST00000393211 NDUFC2-KCTD14E9PQ53 114 aa6.8□□□□□ -1.32
COL17A1-203ENST00000393211 IGLV6-57P01721 117 aa6.8□□□□□ -1.32
COL17A1-203ENST00000393211 APOC4P55056 127 aa6.8□□□□□ -1.32
COL17A1-203ENST00000393211 C9orf66Q5T8R8 295 aa6.8□□□□□ -1.32
COL17A1-203ENST00000393211 Q6ZQT0 140 aa6.8□□□□□ -1.32
COL17A1-203ENST00000393211 C2CD3Q4AC94 2353 aa6.8□□□□□ -1.32
COL17A1-203ENST00000393211 A0A096LPF7 62 aa6.79□□□□□ -1.32
COL17A1-203ENST00000393211 DAD1P61803 113 aa6.79□□□□□ -1.32
COL17A1-203ENST00000393211 LELP1Q5T871 98 aa6.79□□□□□ -1.32
COL17A1-203ENST00000393211 LRRK2Q5S007 2527 aa6.79□□□□□ -1.32
COL17A1-203ENST00000393211 SETXQ7Z333 2677 aaKnown RBP6.79□□□□□ -1.32
COL17A1-203ENST00000393211 MIFP14174 115 aa6.79□□□□□ -1.32
COL17A1-203ENST00000393211 SPAG11BQ08648 103 aa6.79□□□□□ -1.32
COL17A1-203ENST00000393211 PRR34Q9NV39 138 aa6.79□□□□□ -1.32
COL17A1-203ENST00000393211 TLN2Q9Y4G6 2542 aa6.78□□□□□ -1.32
COL17A1-203ENST00000393211 ITPR3Q14573 2671 aa6.78□□□□□ -1.32
COL17A1-203ENST00000393211 J3QKU1 62 aa6.78□□□□□ -1.32
COL17A1-203ENST00000393211 C9orf116Q5BN46 136 aaPredicted RBP6.78□□□□□ -1.32
COL17A1-203ENST00000393211 BAHCC1Q9P281 2608 aa6.77□□□□□ -1.33
COL17A1-203ENST00000393211 IGLV10-54A0A075B6I4 117 aa6.77□□□□□ -1.33
COL17A1-203ENST00000393211 TRBV7-6A0A0J9YX20 115 aa6.77□□□□□ -1.33
COL17A1-203ENST00000393211 KRTAP10-3P60369 221 aa6.77□□□□□ -1.33
COL17A1-203ENST00000393211 ABCA12Q86UK0 2595 aa6.76□□□□□ -1.33
COL17A1-203ENST00000393211 CYSRT1A8MQ03 144 aa6.76□□□□□ -1.33
COL17A1-203ENST00000393211 UNQ6190/PRO20217Q6UXQ8 127 aa6.76□□□□□ -1.33
COL17A1-203ENST00000393211 Q8NDZ9 215 aa6.76□□□□□ -1.33
COL17A1-203ENST00000393211 CSMD2Q7Z408 3487 aa6.76□□□□□ -1.33
COL17A1-203ENST00000393211 AKAP9Q99996 3911 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms