RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 XCL2Q9UBD3 114 aa10.42□□□□□ -0.74
VPS9D1-201ENST00000389386 WNK1Q9H4A3 2382 aa10.41□□□□□ -0.74
VPS9D1-201ENST00000389386 MIR7-3HGQ8N6C7 128 aa10.41□□□□□ -0.74
VPS9D1-201ENST00000389386 SERP1Q9Y6X1 66 aa10.41□□□□□ -0.74
VPS9D1-201ENST00000389386 SLPIP03973 132 aa10.41□□□□□ -0.74
VPS9D1-201ENST00000389386 FAM19A1Q7Z5A9 133 aa10.41□□□□□ -0.74
VPS9D1-201ENST00000389386 S100A7L2Q5SY68 101 aa10.4□□□□□ -0.74
VPS9D1-201ENST00000389386 ATP5EP2Q5VTU8 51 aa10.4□□□□□ -0.74
VPS9D1-201ENST00000389386 KRTAP1-3Q8IUG1 177 aa10.4□□□□□ -0.74
VPS9D1-201ENST00000389386 LINC01356Q8N9X3 169 aa10.4□□□□□ -0.75
VPS9D1-201ENST00000389386 LYPD5Q6UWN5 251 aa10.39□□□□□ -0.75
VPS9D1-201ENST00000389386 RPL36AP83881 106 aaKnown RBP10.39□□□□□ -0.75
VPS9D1-201ENST00000389386 RPL36ALQ969Q0 106 aaKnown RBP10.39□□□□□ -0.75
VPS9D1-201ENST00000389386 H7BZZ5 65 aa10.38□□□□□ -0.75
VPS9D1-201ENST00000389386 C1orf195Q5TG92 126 aa10.38□□□□□ -0.75
VPS9D1-201ENST00000389386 ENHOQ6UWT2 76 aa10.38□□□□□ -0.75
VPS9D1-201ENST00000389386 IGHV4-31P0DP07 118 aa10.37□□□□□ -0.75
VPS9D1-201ENST00000389386 NOTCH3Q9UM47 2321 aa10.37□□□□□ -0.75
VPS9D1-201ENST00000389386 ORMDL1Q9P0S3 153 aa10.37□□□□□ -0.75
VPS9D1-201ENST00000389386 CCL18P55774 89 aa10.36□□□□□ -0.75
VPS9D1-201ENST00000389386 A0A0U1RQV1 116 aa10.35□□□□□ -0.75
VPS9D1-201ENST00000389386 C16orf95Q9H693 158 aa10.35□□□□□ -0.75
VPS9D1-201ENST00000389386 CDC42SE2Q9NRR3 84 aa10.35□□□□□ -0.75
VPS9D1-201ENST00000389386 TRBV10-3A0A0K0K1G6 114 aa10.35□□□□□ -0.75
VPS9D1-201ENST00000389386 CFHR3Q02985 330 aa10.35□□□□□ -0.75
VPS9D1-201ENST00000389386 OTOGQ6ZRI0 2925 aa10.34□□□□□ -0.75
VPS9D1-201ENST00000389386 LINC00158P58513 81 aa10.34□□□□□ -0.75
VPS9D1-201ENST00000389386 COX7B2Q8TF08 81 aa10.34□□□□□ -0.75
VPS9D1-201ENST00000389386 NTM-AS1Q6ZSK4 140 aa10.33□□□□□ -0.76
VPS9D1-201ENST00000389386 C11orf72Q8NBR9 251 aa10.33□□□□□ -0.76
VPS9D1-201ENST00000389386 NIPBLQ6KC79 2804 aaeCLIP10.32□□□□□ -0.76
VPS9D1-201ENST00000389386 TRAV7A0A075B6U4 112 aa10.32□□□□□ -0.76
VPS9D1-201ENST00000389386 JMJD7-PLA2G4BH0Y9G9 81 aa10.32□□□□□ -0.76
VPS9D1-201ENST00000389386 FP248Q71RG6 208 aaPredicted RBP10.32□□□□□ -0.76
VPS9D1-201ENST00000389386 LINC00167Q96N53 147 aa10.32□□□□□ -0.76
VPS9D1-201ENST00000389386 DEFB136Q30KP8 78 aa10.31□□□□□ -0.76
VPS9D1-201ENST00000389386 C18orf65Q6ZTR6 163 aa10.31□□□□□ -0.76
VPS9D1-201ENST00000389386 SMIM26A0A096LP01 95 aa10.31□□□□□ -0.76
VPS9D1-201ENST00000389386 BCE1O60756 84 aa10.31□□□□□ -0.76
VPS9D1-201ENST00000389386 A8MTW9 85 aa10.3□□□□□ -0.76
VPS9D1-201ENST00000389386 KLKP1Q107X0 134 aa10.3□□□□□ -0.76
VPS9D1-201ENST00000389386 SETXQ7Z333 2677 aaKnown RBP10.29□□□□□ -0.76
VPS9D1-201ENST00000389386 BRK1Q8WUW1 75 aa10.29□□□□□ -0.76
VPS9D1-201ENST00000389386 TOMM7Q9P0U1 55 aa10.29□□□□□ -0.76
VPS9D1-201ENST00000389386 PAX4O43316 350 aa10.29□□□□□ -0.76
VPS9D1-201ENST00000389386 LY6G6DO95868 133 aa10.29□□□□□ -0.76
VPS9D1-201ENST00000389386 UBL5Q9BZL1 73 aa10.29□□□□□ -0.76
VPS9D1-201ENST00000389386 TRBV6-4A0A1B0GX49 114 aa10.28□□□□□ -0.76
VPS9D1-201ENST00000389386 DEFB131AP59861 70 aa10.28□□□□□ -0.76
VPS9D1-201ENST00000389386 IBA57-AS1B1ANH7 110 aa10.27□□□□□ -0.76
VPS9D1-201ENST00000389386 Q6YL49 198 aa10.27□□□□□ -0.77
VPS9D1-201ENST00000389386 SMR3AQ99954 134 aa10.27□□□□□ -0.77
VPS9D1-201ENST00000389386 ZNF702PQ9H963 129 aa10.27□□□□□ -0.77
VPS9D1-201ENST00000389386 HIVEP2P31629 2446 aa10.27□□□□□ -0.77
VPS9D1-201ENST00000389386 JMJD1CQ15652 2540 aa10.27□□□□□ -0.77
VPS9D1-201ENST00000389386 TMEM89A2RUT3 159 aa10.26□□□□□ -0.77
VPS9D1-201ENST00000389386 KHDC1LQ5JSQ8 128 aa10.26□□□□□ -0.77
VPS9D1-201ENST00000389386 K7EQD1 137 aa10.26□□□□□ -0.77
VPS9D1-201ENST00000389386 TMEM256-PLSCR3K7ERE1 68 aa10.26□□□□□ -0.77
VPS9D1-201ENST00000389386 Q8N814 137 aa10.26□□□□□ -0.77
VPS9D1-201ENST00000389386 Q6ZTI0 123 aa10.25□□□□□ -0.77
VPS9D1-201ENST00000389386 HIVEP1P15822 2718 aa10.25□□□□□ -0.77
VPS9D1-201ENST00000389386 SLURP1P55000 103 aa10.25□□□□□ -0.77
VPS9D1-201ENST00000389386 RMI2Q96E14 147 aa10.25□□□□□ -0.77
VPS9D1-201ENST00000389386 SNURFQ9Y675 71 aa10.25□□□□□ -0.77
VPS9D1-201ENST00000389386 C2CD3Q4AC94 2353 aa10.25□□□□□ -0.77
VPS9D1-201ENST00000389386 C11orf44Q8N8P7 122 aa10.24□□□□□ -0.77
VPS9D1-201ENST00000389386 IL17DQ8TAD2 202 aa10.24□□□□□ -0.77
VPS9D1-201ENST00000389386 LINC00482Q8N8I6 264 aa10.24□□□□□ -0.77
VPS9D1-201ENST00000389386 TRAV10A0A0B4J240 114 aa10.23□□□□□ -0.77
VPS9D1-201ENST00000389386 FSHBP01225 129 aa10.23□□□□□ -0.77
VPS9D1-201ENST00000389386 F8WEM9 126 aa10.23□□□□□ -0.77
VPS9D1-201ENST00000389386 BAHCC1Q9P281 2608 aa10.22□□□□□ -0.77
VPS9D1-201ENST00000389386 TRBV10-1A0A0K0K1A3 114 aa10.22□□□□□ -0.77
VPS9D1-201ENST00000389386 LINC00474Q9P2X8 69 aa10.22□□□□□ -0.77
VPS9D1-201ENST00000389386 NANOS2P60321 138 aaKnown RBP10.21□□□□□ -0.77
VPS9D1-201ENST00000389386 TRBV7-6A0A0J9YX20 115 aa10.21□□□□□ -0.78
VPS9D1-201ENST00000389386 UBE2L6O14933 153 aa10.21□□□□□ -0.78
VPS9D1-201ENST00000389386 KRTAP1-1Q07627 177 aa10.21□□□□□ -0.78
VPS9D1-201ENST00000389386 ANK3Q12955 4377 aaKnown RBP10.21□□□□□ -0.78
VPS9D1-201ENST00000389386 IGHV3OR16-9A0A0B4J2B5 98 aa10.2□□□□□ -0.78
VPS9D1-201ENST00000389386 LINC01547P58512 204 aaPredicted RBP10.2□□□□□ -0.78
VPS9D1-201ENST00000389386 TRGV1A0A0A0MS02 117 aa10.19□□□□□ -0.78
VPS9D1-201ENST00000389386 RBM3P98179 157 aaKnown RBP10.19□□□□□ -0.78
VPS9D1-201ENST00000389386 Q6ZQT0 140 aa10.19□□□□□ -0.78
VPS9D1-201ENST00000389386 IGKV3OR2-268A0A0C4DH90 116 aa10.19□□□□□ -0.78
VPS9D1-201ENST00000389386 FN1P02751 2386 aaKnown RBP10.18□□□□□ -0.78
VPS9D1-201ENST00000389386 INSP01308 110 aa10.18□□□□□ -0.78
VPS9D1-201ENST00000389386 UBE2E2Q96LR5 201 aa10.18□□□□□ -0.78
VPS9D1-201ENST00000389386 A0A1W2PRX2 142 aa10.18□□□□□ -0.78
VPS9D1-201ENST00000389386 TEP1Q99973 2627 aaKnown RBP10.17□□□□□ -0.78
VPS9D1-201ENST00000389386 A0A087WZ39 114 aa10.17□□□□□ -0.78
VPS9D1-201ENST00000389386 NDUFC1O43677 76 aa10.17□□□□□ -0.78
VPS9D1-201ENST00000389386 RNASE1P07998 156 aaKnown RBP10.17□□□□□ -0.78
VPS9D1-201ENST00000389386 NSD1Q96L73 2696 aaPredicted RBP10.16□□□□□ -0.78
VPS9D1-201ENST00000389386 PRR3P79522 188 aaKnown RBP10.16□□□□□ -0.78
VPS9D1-201ENST00000389386 HAMPP81172 84 aa10.16□□□□□ -0.78
VPS9D1-201ENST00000389386 LOC110117498A0A087WWA1 95 aa10.15□□□□□ -0.78
VPS9D1-201ENST00000389386 M0R2N4 97 aa10.15□□□□□ -0.78
VPS9D1-201ENST00000389386 Q6ZVQ6 151 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms