RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 TEX15Q9BXT5 2789 aa11.1□□□□□ -0.63
CKAP4-201ENST00000378026 TRGV4A0A0C4DH28 118 aa11.1□□□□□ -0.63
CKAP4-201ENST00000378026 XCL1P47992 114 aa11.1□□□□□ -0.63
CKAP4-201ENST00000378026 NAV2Q8IVL1 2488 aa11.1□□□□□ -0.63
CKAP4-201ENST00000378026 ZFYVE26Q68DK2 2539 aa11.1□□□□□ -0.63
CKAP4-201ENST00000378026 LRRK2Q5S007 2527 aa11.08□□□□□ -0.64
CKAP4-201ENST00000378026 LINC01356Q8N9X3 169 aa11.08□□□□□ -0.64
CKAP4-201ENST00000378026 IL17DQ8TAD2 202 aa11.08□□□□□ -0.64
CKAP4-201ENST00000378026 WFDC10AQ9H1F0 79 aa11.07□□□□□ -0.64
CKAP4-201ENST00000378026 SETXQ7Z333 2677 aaKnown RBP11.07□□□□□ -0.64
CKAP4-201ENST00000378026 RPL35AP18077 110 aaKnown RBP11.07□□□□□ -0.64
CKAP4-201ENST00000378026 Q5XG85 94 aa11.07□□□□□ -0.64
CKAP4-201ENST00000378026 A0A087WZ39 114 aa11.06□□□□□ -0.64
CKAP4-201ENST00000378026 TMEM86BQ8N661 226 aa11.05□□□□□ -0.64
CKAP4-201ENST00000378026 Q8N814 137 aa11.05□□□□□ -0.64
CKAP4-201ENST00000378026 TRBV6-8A0A0A6YYG3 113 aa11.05□□□□□ -0.64
CKAP4-201ENST00000378026 Q6YL49 198 aa11.05□□□□□ -0.64
CKAP4-201ENST00000378026 CCDC168Q8NDH2 2452 aa11.05□□□□□ -0.64
CKAP4-201ENST00000378026 S100A7L2Q5SY68 101 aa11.04□□□□□ -0.64
CKAP4-201ENST00000378026 PKD1L2Q7Z442 2459 aa11.04□□□□□ -0.64
CKAP4-201ENST00000378026 JMJD7-PLA2G4BH0Y9G9 81 aa11.04□□□□□ -0.64
CKAP4-201ENST00000378026 UBL5Q9BZL1 73 aa11.04□□□□□ -0.64
CKAP4-201ENST00000378026 A0A096LNT2 108 aa11.03□□□□□ -0.64
CKAP4-201ENST00000378026 LINC00959A0A1B0GUT2 108 aa11.03□□□□□ -0.64
CKAP4-201ENST00000378026 NBEAL2Q6ZNJ1 2754 aa11.03□□□□□ -0.64
CKAP4-201ENST00000378026 A0A096LPF7 62 aa11.03□□□□□ -0.64
CKAP4-201ENST00000378026 C4orf3Q8WVX3 66 aa11.03□□□□□ -0.64
CKAP4-201ENST00000378026 NANOS2P60321 138 aaKnown RBP11.03□□□□□ -0.64
CKAP4-201ENST00000378026 TMEM256-PLSCR3K7ERE1 68 aa11.02□□□□□ -0.65
CKAP4-201ENST00000378026 DOPEY1Q5JWR5 2465 aa11.02□□□□□ -0.65
CKAP4-201ENST00000378026 TRAV25A0A0B4J276 109 aa11.02□□□□□ -0.65
CKAP4-201ENST00000378026 C9orf116Q5BN46 136 aaPredicted RBP11.02□□□□□ -0.65
CKAP4-201ENST00000378026 LY6G6DO95868 133 aa11.01□□□□□ -0.65
CKAP4-201ENST00000378026 HAMPP81172 84 aa11.01□□□□□ -0.65
CKAP4-201ENST00000378026 C6orf99Q4VX62 202 aa11□□□□□ -0.65
CKAP4-201ENST00000378026 M0R2N4 97 aa11□□□□□ -0.65
CKAP4-201ENST00000378026 DEFB130BP0DP73 79 aa11□□□□□ -0.65
CKAP4-201ENST00000378026 DEFB130AP0DP74 79 aa11□□□□□ -0.65
CKAP4-201ENST00000378026 SNURFQ9Y675 71 aa11□□□□□ -0.65
CKAP4-201ENST00000378026 FAM236DA0A1B0GTK5 79 aa10.99□□□□□ -0.65
CKAP4-201ENST00000378026 PLAC8L1A1L4L8 177 aa10.99□□□□□ -0.65
CKAP4-201ENST00000378026 NDUFC2O95298 119 aa10.99□□□□□ -0.65
CKAP4-201ENST00000378026 FAM236CP0DP71 79 aa10.99□□□□□ -0.65
CKAP4-201ENST00000378026 LAMTOR3Q9UHA4 124 aa10.99□□□□□ -0.65
CKAP4-201ENST00000378026 IGLV10-54A0A075B6I4 117 aa10.98□□□□□ -0.65
CKAP4-201ENST00000378026 GIG44P09565 113 aaPredicted RBP10.98□□□□□ -0.65
CKAP4-201ENST00000378026 ATP5EP2Q5VTU8 51 aa10.97□□□□□ -0.65
CKAP4-201ENST00000378026 C16orf74Q96GX8 76 aa10.96□□□□□ -0.65
CKAP4-201ENST00000378026 TRAV10A0A0B4J240 114 aa10.95□□□□□ -0.66
CKAP4-201ENST00000378026 WIPF1O43516 503 aa10.95□□□□□ -0.66
CKAP4-201ENST00000378026 LINC00167Q96N53 147 aa10.95□□□□□ -0.66
CKAP4-201ENST00000378026 GCN1Q92616 2671 aaKnown RBP10.95□□□□□ -0.66
CKAP4-201ENST00000378026 RBM3P98179 157 aaKnown RBP10.95□□□□□ -0.66
CKAP4-201ENST00000378026 CR1P17927 2039 aa10.95□□□□□ -0.66
CKAP4-201ENST00000378026 APCP25054 2843 aa10.94□□□□□ -0.66
CKAP4-201ENST00000378026 J3QLI3 93 aa10.94□□□□□ -0.66
CKAP4-201ENST00000378026 LINC00269Q8N2A0 174 aa10.94□□□□□ -0.66
CKAP4-201ENST00000378026 Q8NDZ9 215 aa10.94□□□□□ -0.66
CKAP4-201ENST00000378026 RMI2Q96E14 147 aa10.94□□□□□ -0.66
CKAP4-201ENST00000378026 SPATA3Q8NHX4 192 aa10.94□□□□□ -0.66
CKAP4-201ENST00000378026 SCXQ7RTU7 201 aa10.93□□□□□ -0.66
CKAP4-201ENST00000378026 LYPD5Q6UWN5 251 aa10.93□□□□□ -0.66
CKAP4-201ENST00000378026 H7BZZ5 65 aa10.93□□□□□ -0.66
CKAP4-201ENST00000378026 CCL24O00175 119 aa10.93□□□□□ -0.66
CKAP4-201ENST00000378026 GYPEP15421 78 aa10.93□□□□□ -0.66
CKAP4-201ENST00000378026 Q8IZM0 81 aa10.93□□□□□ -0.66
CKAP4-201ENST00000378026 MTORP42345 2549 aa10.92□□□□□ -0.66
CKAP4-201ENST00000378026 NDUFC2-KCTD14E9PQ53 114 aa10.92□□□□□ -0.66
CKAP4-201ENST00000378026 LINC01547P58512 204 aaPredicted RBP10.92□□□□□ -0.66
CKAP4-201ENST00000378026 DSCR9P59020 149 aa10.92□□□□□ -0.66
CKAP4-201ENST00000378026 Q8N3U1 123 aa10.91□□□□□ -0.66
CKAP4-201ENST00000378026 Q6ZQT0 140 aa10.91□□□□□ -0.66
CKAP4-201ENST00000378026 PIEZO1Q92508 2521 aa10.91□□□□□ -0.66
CKAP4-201ENST00000378026 ZNF843Q8N446 348 aa10.9□□□□□ -0.66
CKAP4-201ENST00000378026 IGHV4-31P0DP07 118 aa10.9□□□□□ -0.66
CKAP4-201ENST00000378026 IGSF10Q6WRI0 2623 aa10.9□□□□□ -0.66
CKAP4-201ENST00000378026 ZNF469Q96JG9 3925 aaPredicted RBP10.9□□□□□ -0.67
CKAP4-201ENST00000378026 Q6ZVQ6 151 aa10.89□□□□□ -0.67
CKAP4-201ENST00000378026 TRAV7A0A075B6U4 112 aa10.89□□□□□ -0.67
CKAP4-201ENST00000378026 LINC00575Q6W349 94 aa10.89□□□□□ -0.67
CKAP4-201ENST00000378026 TRBV10-3A0A0K0K1G6 114 aa10.88□□□□□ -0.67
CKAP4-201ENST00000378026 F8WEM9 126 aa10.88□□□□□ -0.67
CKAP4-201ENST00000378026 PRB1P04280 392 aa10.88□□□□□ -0.67
CKAP4-201ENST00000378026 LINC00336Q6ZUF6 198 aa10.88□□□□□ -0.67
CKAP4-201ENST00000378026 FSHBP01225 129 aa10.88□□□□□ -0.67
CKAP4-201ENST00000378026 Q6ZQY7 126 aa10.88□□□□□ -0.67
CKAP4-201ENST00000378026 ESM1Q9NQ30 184 aa10.88□□□□□ -0.67
CKAP4-201ENST00000378026 SERP1Q9Y6X1 66 aa10.87□□□□□ -0.67
CKAP4-201ENST00000378026 C6orf223Q8N319 242 aa10.86□□□□□ -0.67
CKAP4-201ENST00000378026 KIAA0087Q14695 138 aa10.86□□□□□ -0.67
CKAP4-201ENST00000378026 ACANP16112 2415 aa10.85□□□□□ -0.67
CKAP4-201ENST00000378026 ZNF561-AS1K7EIQ3 104 aa10.85□□□□□ -0.67
CKAP4-201ENST00000378026 ANGP03950 147 aaKnown RBP10.85□□□□□ -0.67
CKAP4-201ENST00000378026 CSNK1G2-AS1Q8NCQ2 148 aa10.85□□□□□ -0.67
CKAP4-201ENST00000378026 CHCHD10Q8WYQ3 142 aaPredicted RBP10.85□□□□□ -0.67
CKAP4-201ENST00000378026 C10orf25Q5T742 122 aa10.84□□□□□ -0.67
CKAP4-201ENST00000378026 WFDC11Q8NEX6 87 aa10.84□□□□□ -0.67
CKAP4-201ENST00000378026 BBC3Q96PG8 261 aaPredicted RBP10.84□□□□□ -0.67
CKAP4-201ENST00000378026 TM2D3Q9BRN9 247 aa10.84□□□□□ -0.67
CKAP4-201ENST00000378026 LINC00482Q8N8I6 264 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms