RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 FAM74A3Q4VXF1 159 aa8.05□□□□□ -1.12
VPS29-201ENST00000360579 C6orf226Q5I0X4 101 aa8.05□□□□□ -1.12
VPS29-201ENST00000360579 Q6ZN92 141 aa8.05□□□□□ -1.12
VPS29-201ENST00000360579 TEX43Q6ZNM6 134 aa8.05□□□□□ -1.12
VPS29-201ENST00000360579 LINC00173Q6ZV60 143 aa8.05□□□□□ -1.12
VPS29-201ENST00000360579 C2orf88Q9BSF0 95 aa8.05□□□□□ -1.12
VPS29-201ENST00000360579 EIF5A2Q9GZV4 153 aaKnown RBP8.05□□□□□ -1.12
VPS29-201ENST00000360579 IGLV4-3A0A075B6K6 122 aa8.04□□□□□ -1.12
VPS29-201ENST00000360579 F8W036 122 aa8.04□□□□□ -1.12
VPS29-201ENST00000360579 PPBPP02775 128 aa8.04□□□□□ -1.12
VPS29-201ENST00000360579 S100A8P05109 93 aa8.04□□□□□ -1.12
VPS29-201ENST00000360579 Q8IZM0 81 aa8.04□□□□□ -1.12
VPS29-201ENST00000360579 TOMM7Q9P0U1 55 aa8.04□□□□□ -1.12
VPS29-201ENST00000360579 KRTAP13-2Q52LG2 175 aa8.03□□□□□ -1.12
VPS29-201ENST00000360579 ANAPC11Q9NYG5 84 aa8.03□□□□□ -1.12
VPS29-201ENST00000360579 FSIP2Q5CZC0 6907 aa8.02□□□□□ -1.12
VPS29-201ENST00000360579 SMIM27A0A1W2PRY6 76 aa8.02□□□□□ -1.13
VPS29-201ENST00000360579 NPYP01303 97 aa8.02□□□□□ -1.13
VPS29-201ENST00000360579 TCTE3Q8IZS6 198 aa8.02□□□□□ -1.13
VPS29-201ENST00000360579 ALKBH7Q9BT30 221 aaPredicted RBP8.02□□□□□ -1.13
VPS29-201ENST00000360579 IGKV2D-26A0A0A0MRZ7 120 aa8.01□□□□□ -1.13
VPS29-201ENST00000360579 F8VRH5 84 aa8.01□□□□□ -1.13
VPS29-201ENST00000360579 UBE2AP49459 152 aa8.01□□□□□ -1.13
VPS29-201ENST00000360579 KRTAP4-2Q9BYR5 136 aa8.01□□□□□ -1.13
VPS29-201ENST00000360579 ALKAL2Q6UX46 152 aa8□□□□□ -1.13
VPS29-201ENST00000360579 LINC00167Q96N53 147 aa8□□□□□ -1.13
VPS29-201ENST00000360579 RPL37AP8A6NKH3 93 aa7.99□□□□□ -1.13
VPS29-201ENST00000360579 SRP19P09132 144 aaKnown RBP7.99□□□□□ -1.13
VPS29-201ENST00000360579 LINC01547P58512 204 aaPredicted RBP7.99□□□□□ -1.13
VPS29-201ENST00000360579 ORMDL3Q8N138 153 aa7.99□□□□□ -1.13
VPS29-201ENST00000360579 VCX2Q9H322 139 aa7.99□□□□□ -1.13
VPS29-201ENST00000360579 PPDPFQ9H3Y8 114 aa7.99□□□□□ -1.13
VPS29-201ENST00000360579 NPSP0C0P6 89 aa7.98□□□□□ -1.13
VPS29-201ENST00000360579 CXCL5P42830 114 aa7.98□□□□□ -1.13
VPS29-201ENST00000360579 RPL23P62829 140 aaKnown RBP7.98□□□□□ -1.13
VPS29-201ENST00000360579 SEC11AP67812 179 aa7.98□□□□□ -1.13
VPS29-201ENST00000360579 ADIRFQ15847 76 aa7.98□□□□□ -1.13
VPS29-201ENST00000360579 KRTAP19-4Q3LI73 84 aa7.98□□□□□ -1.13
VPS29-201ENST00000360579 KRTAP13-1Q8IUC0 172 aa7.98□□□□□ -1.13
VPS29-201ENST00000360579 AMELXQ99217 191 aa7.98□□□□□ -1.13
VPS29-201ENST00000360579 MRPL54Q6P161 138 aaKnown RBP7.97□□□□□ -1.13
VPS29-201ENST00000360579 TMEM136Q6ZRR5 245 aa7.97□□□□□ -1.13
VPS29-201ENST00000360579 FAM19A3Q7Z5A8 133 aa7.97□□□□□ -1.13
VPS29-201ENST00000360579 CYSLTR1Q9Y271 337 aa7.97□□□□□ -1.13
VPS29-201ENST00000360579 A0A1B0GXF2 115 aa7.96□□□□□ -1.14
VPS29-201ENST00000360579 GAGE10A6NGK3 116 aa7.96□□□□□ -1.14
VPS29-201ENST00000360579 HERVK_113P63121 156 aa7.96□□□□□ -1.14
VPS29-201ENST00000360579 LCE4AQ5TA78 99 aa7.96□□□□□ -1.14
VPS29-201ENST00000360579 PRELID3AQ96N28 172 aa7.96□□□□□ -1.14
VPS29-201ENST00000360579 NAT8Q9UHE5 227 aa7.96□□□□□ -1.14
VPS29-201ENST00000360579 IGLV5-37A0A075B6J1 123 aa7.95□□□□□ -1.14
VPS29-201ENST00000360579 C2orf66Q6UXQ4 117 aa7.95□□□□□ -1.14
VPS29-201ENST00000360579 NKAPP1Q8N9T2 125 aa7.95□□□□□ -1.14
VPS29-201ENST00000360579 CRCT1Q9UGL9 99 aa7.95□□□□□ -1.14
VPS29-201ENST00000360579 LAMTOR2Q9Y2Q5 125 aa7.95□□□□□ -1.14
VPS29-201ENST00000360579 PRSS47A8MTI9 375 aa7.94□□□□□ -1.14
VPS29-201ENST00000360579 PNRC1Q12796 327 aaPredicted RBP7.94□□□□□ -1.14
VPS29-201ENST00000360579 PAPPA-AS1Q5QFB9 102 aa7.94□□□□□ -1.14
VPS29-201ENST00000360579 ZC2HC1BQ5TFG8 222 aa7.94□□□□□ -1.14
VPS29-201ENST00000360579 FP248Q71RG6 208 aaPredicted RBP7.94□□□□□ -1.14
VPS29-201ENST00000360579 LINC00337Q8N6G1 96 aa7.94□□□□□ -1.14
VPS29-201ENST00000360579 GEMIN7Q9H840 131 aaKnown RBP7.94□□□□□ -1.14
VPS29-201ENST00000360579 CDKN2A-AS1Q9UH64 79 aa7.94□□□□□ -1.14
VPS29-201ENST00000360579 ORMDL2Q53FV1 153 aa7.93□□□□□ -1.14
VPS29-201ENST00000360579 SPAG11AQ6PDA7 123 aa7.93□□□□□ -1.14
VPS29-201ENST00000360579 ATP5L2Q7Z4Y8 100 aa7.93□□□□□ -1.14
VPS29-201ENST00000360579 MAP1LC3AQ9H492 121 aa7.93□□□□□ -1.14
VPS29-201ENST00000360579 LOC389332A0A1B0GUA5 103 aa7.92□□□□□ -1.14
VPS29-201ENST00000360579 IGIPA6NJ69 53 aa7.91□□□□□ -1.14
VPS29-201ENST00000360579 K7EMI3 77 aa7.91□□□□□ -1.14
VPS29-201ENST00000360579 ASB16-AS1Q495Z4 193 aa7.91□□□□□ -1.14
VPS29-201ENST00000360579 Q8N8P6 123 aa7.91□□□□□ -1.14
VPS29-201ENST00000360579 IGKV2-28A0A075B6P5 120 aa7.9□□□□□ -1.14
VPS29-201ENST00000360579 IGKV2D-28P01615 120 aa7.9□□□□□ -1.14
VPS29-201ENST00000360579 G0S2P27469 103 aa7.89□□□□□ -1.15
VPS29-201ENST00000360579 PRLHP81277 87 aa7.89□□□□□ -1.15
VPS29-201ENST00000360579 PDZD11Q5EBL8 140 aa7.89□□□□□ -1.15
VPS29-201ENST00000360579 COX7B2Q8TF08 81 aa7.89□□□□□ -1.15
VPS29-201ENST00000360579 SMIM1B2RUZ4 78 aa7.88□□□□□ -1.15
VPS29-201ENST00000360579 SEC61BP60468 96 aaKnown RBP7.88□□□□□ -1.15
VPS29-201ENST00000360579 FAM19A1Q7Z5A9 133 aa7.88□□□□□ -1.15
VPS29-201ENST00000360579 GNB1LQ9BYB4 327 aa7.88□□□□□ -1.15
VPS29-201ENST00000360579 RAB5BP61020 215 aa7.87□□□□□ -1.15
VPS29-201ENST00000360579 KRTAP13-3Q3SY46 172 aa7.87□□□□□ -1.15
VPS29-201ENST00000360579 C3orf22Q8N5N4 141 aa7.87□□□□□ -1.15
VPS29-201ENST00000360579 PLEKHB2Q96CS7 222 aa7.87□□□□□ -1.15
VPS29-201ENST00000360579 TIMM17AQ99595 171 aa7.87□□□□□ -1.15
VPS29-201ENST00000360579 TMEM126AQ9H061 195 aa7.87□□□□□ -1.15
VPS29-201ENST00000360579 SRSF3P84103 164 aaKnown RBP7.85□□□□□ -1.15
VPS29-201ENST00000360579 PEA15Q15121 130 aa7.85□□□□□ -1.15
VPS29-201ENST00000360579 CBLN2Q8IUK8 224 aa7.85□□□□□ -1.15
VPS29-201ENST00000360579 NXT2Q9NPJ8 142 aaKnown RBP7.85□□□□□ -1.15
VPS29-201ENST00000360579 TINCRA0A1B0GVN0 87 aa7.84□□□□□ -1.15
VPS29-201ENST00000360579 C9JQL5 133 aa7.84□□□□□ -1.15
VPS29-201ENST00000360579 AKAP14Q86UN6 197 aa7.84□□□□□ -1.15
VPS29-201ENST00000360579 IGLV5-45A0A087WSX0 123 aa7.83□□□□□ -1.16
VPS29-201ENST00000360579 TMEM238C9JI98 176 aa7.83□□□□□ -1.16
VPS29-201ENST00000360579 SCO1O75880 301 aa7.83□□□□□ -1.16
VPS29-201ENST00000360579 ATP5LO75964 103 aa7.83□□□□□ -1.16
VPS29-201ENST00000360579 M0R378 163 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 178.1 ms