RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 RBMY1CP0DJD4 496 aa7.2□□□□□ -1.26
SYNE1-203ENST00000354674 RBMY1FQ15415 496 aaKnown RBP7.2□□□□□ -1.26
SYNE1-203ENST00000354674 LINC00467Q9BRT7 94 aa7.2□□□□□ -1.26
SYNE1-203ENST00000354674 WFDC10AQ9H1F0 79 aa7.2□□□□□ -1.26
SYNE1-203ENST00000354674 GIG44P09565 113 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-203ENST00000354674 MED14OSP0DP75 135 aa7.2□□□□□ -1.26
SYNE1-203ENST00000354674 EGFEM1PQ0D2K5 195 aa7.19□□□□□ -1.26
SYNE1-203ENST00000354674 IGHV4-4A0A075B6R2 117 aa7.19□□□□□ -1.26
SYNE1-203ENST00000354674 MDFIQ99750 246 aa7.19□□□□□ -1.26
SYNE1-203ENST00000354674 DNAH3Q8TD57 4116 aa7.19□□□□□ -1.26
SYNE1-203ENST00000354674 RPL28P46779 137 aaKnown RBP7.18□□□□□ -1.26
SYNE1-203ENST00000354674 IGHV1OR15-1A0A075B7D0 117 aa7.18□□□□□ -1.26
SYNE1-203ENST00000354674 VCYO14598 125 aa7.18□□□□□ -1.26
SYNE1-203ENST00000354674 RNASE3P12724 160 aaKnown RBP7.18□□□□□ -1.26
SYNE1-203ENST00000354674 MIAQ16674 131 aa7.18□□□□□ -1.26
SYNE1-203ENST00000354674 FP248Q71RG6 208 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-203ENST00000354674 PIK3CD-AS1Q5SR53 167 aa7.18□□□□□ -1.26
SYNE1-203ENST00000354674 ENHOQ6UWT2 76 aa7.18□□□□□ -1.26
SYNE1-203ENST00000354674 RETNQ9HD89 108 aa7.18□□□□□ -1.26
SYNE1-203ENST00000354674 C22orf24Q9Y442 160 aa7.18□□□□□ -1.26
SYNE1-203ENST00000354674 INSP01308 110 aa7.17□□□□□ -1.26
SYNE1-203ENST00000354674 CXCL5P42830 114 aa7.17□□□□□ -1.26
SYNE1-203ENST00000354674 IGHV3-16A0A0C4DH30 117 aa7.17□□□□□ -1.26
SYNE1-203ENST00000354674 CSNK1G2-AS1Q8NCQ2 148 aa7.17□□□□□ -1.26
SYNE1-203ENST00000354674 RMI2Q96E14 147 aa7.17□□□□□ -1.26
SYNE1-203ENST00000354674 STAB1Q9NY15 2570 aa7.16□□□□□ -1.26
SYNE1-203ENST00000354674 OXLD1Q5BKU9 147 aa7.16□□□□□ -1.26
SYNE1-203ENST00000354674 C1orf158Q8N1D5 194 aa7.16□□□□□ -1.26
SYNE1-203ENST00000354674 TMEM141Q96I45 108 aa7.16□□□□□ -1.26
SYNE1-203ENST00000354674 LRCOL1A6NCL2 159 aa7.16□□□□□ -1.26
SYNE1-203ENST00000354674 KRTAP10-11P60412 298 aa7.16□□□□□ -1.26
SYNE1-203ENST00000354674 Q9UF83 564 aa7.16□□□□□ -1.26
SYNE1-203ENST00000354674 COX7A2LO14548 114 aa7.16□□□□□ -1.26
SYNE1-203ENST00000354674 XCL2Q9UBD3 114 aa7.16□□□□□ -1.26
SYNE1-203ENST00000354674 IGLV4-3A0A075B6K6 122 aa7.15□□□□□ -1.26
SYNE1-203ENST00000354674 XCL1P47992 114 aa7.15□□□□□ -1.26
SYNE1-203ENST00000354674 COL6A5A8TX70 2615 aa7.15□□□□□ -1.27
SYNE1-203ENST00000354674 IGHV3-38A0A0C4DH36 116 aa7.15□□□□□ -1.27
SYNE1-203ENST00000354674 POLR2KP53803 58 aaKnown RBP7.15□□□□□ -1.27
SYNE1-203ENST00000354674 TIMM17AQ99595 171 aa7.15□□□□□ -1.27
SYNE1-203ENST00000354674 Q9H8V8 135 aa7.14□□□□□ -1.27
SYNE1-203ENST00000354674 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-203ENST00000354674 A0A087WYN8 130 aa7.14□□□□□ -1.27
SYNE1-203ENST00000354674 IGKV2-29A2NJV5 120 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-203ENST00000354674 C11orf72Q8NBR9 251 aa7.14□□□□□ -1.27
SYNE1-203ENST00000354674 PKD1L1Q8TDX9 2849 aa7.13□□□□□ -1.27
SYNE1-203ENST00000354674 TIMM17BO60830 172 aa7.13□□□□□ -1.27
SYNE1-203ENST00000354674 PRB2P02812 416 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-203ENST00000354674 PRM2P04554 102 aa7.13□□□□□ -1.27
SYNE1-203ENST00000354674 F8WEM9 126 aa7.13□□□□□ -1.27
SYNE1-203ENST00000354674 LYPD5Q6UWN5 251 aa7.13□□□□□ -1.27
SYNE1-203ENST00000354674 INAFM2P0DMQ5 153 aa7.12□□□□□ -1.27
SYNE1-203ENST00000354674 CDKN2A-AS1Q9UH64 79 aa7.12□□□□□ -1.27
SYNE1-203ENST00000354674 A0A087WZ39 114 aa7.12□□□□□ -1.27
SYNE1-203ENST00000354674 TRBV27A0A0K0K1C4 114 aa7.12□□□□□ -1.27
SYNE1-203ENST00000354674 LINC00315P59091 139 aa7.12□□□□□ -1.27
SYNE1-203ENST00000354674 LINC00308Q8TCZ7 52 aa7.12□□□□□ -1.27
SYNE1-203ENST00000354674 IGHV1-58A0A0C4DH39 117 aa7.12□□□□□ -1.27
SYNE1-203ENST00000354674 LINC01600Q96MT4 127 aa7.11□□□□□ -1.27
SYNE1-203ENST00000354674 UBE2D4Q9Y2X8 147 aa7.11□□□□□ -1.27
SYNE1-203ENST00000354674 IGHV4-30-4P0DP06 118 aa7.11□□□□□ -1.27
SYNE1-203ENST00000354674 VSIG2Q96IQ7 327 aa7.11□□□□□ -1.27
SYNE1-203ENST00000354674 LECT2O14960 151 aa7.1□□□□□ -1.27
SYNE1-203ENST00000354674 FAM229BQ4G0N7 80 aa7.1□□□□□ -1.27
SYNE1-203ENST00000354674 C20orf203Q8NBC4 194 aa7.1□□□□□ -1.27
SYNE1-203ENST00000354674 KIF25-AS1Q9Y6Z4 181 aa7.1□□□□□ -1.27
SYNE1-203ENST00000354674 APOC4P55056 127 aa7.1□□□□□ -1.27
SYNE1-203ENST00000354674 KPRPQ5T749 579 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-203ENST00000354674 H7BZZ5 65 aa7.1□□□□□ -1.27
SYNE1-203ENST00000354674 PLAC8L1A1L4L8 177 aa7.09□□□□□ -1.27
SYNE1-203ENST00000354674 SPANXDQ9BXN6 97 aa7.09□□□□□ -1.27
SYNE1-203ENST00000354674 SPANXCQ9NY87 97 aa7.09□□□□□ -1.27
SYNE1-203ENST00000354674 SERP1Q9Y6X1 66 aa7.09□□□□□ -1.27
SYNE1-203ENST00000354674 KRTAP21-3Q3LHN1 58 aa7.09□□□□□ -1.27
SYNE1-203ENST00000354674 TRBV7-6A0A0J9YX20 115 aa7.08□□□□□ -1.28
SYNE1-203ENST00000354674 Q6ZTI0 123 aa7.08□□□□□ -1.28
SYNE1-203ENST00000354674 C16orf74Q96GX8 76 aa7.08□□□□□ -1.28
SYNE1-203ENST00000354674 IGHV3OR16-12A0A075B7B8 117 aa7.08□□□□□ -1.28
SYNE1-203ENST00000354674 IGKV3OR2-268A0A0C4DH90 116 aa7.08□□□□□ -1.28
SYNE1-203ENST00000354674 X6R8D5 127 aa7.08□□□□□ -1.28
SYNE1-203ENST00000354674 PPP1R17O96001 155 aa7.08□□□□□ -1.28
SYNE1-203ENST00000354674 NDUFC2O95298 119 aa7.07□□□□□ -1.28
SYNE1-203ENST00000354674 COX6A2Q02221 97 aa7.07□□□□□ -1.28
SYNE1-203ENST00000354674 Q6JHZ5 121 aa7.07□□□□□ -1.28
SYNE1-203ENST00000354674 SCXQ7RTU7 201 aa7.07□□□□□ -1.28
SYNE1-203ENST00000354674 OVOL2Q9BRP0 275 aa7.07□□□□□ -1.28
SYNE1-203ENST00000354674 TRAV10A0A0B4J240 114 aa7.07□□□□□ -1.28
SYNE1-203ENST00000354674 HAMPP81172 84 aa7.07□□□□□ -1.28
SYNE1-203ENST00000354674 RPL36AP83881 106 aaKnown RBP7.07□□□□□ -1.28
SYNE1-203ENST00000354674 MIR7-3HGQ8N6C7 128 aa7.07□□□□□ -1.28
SYNE1-203ENST00000354674 RPL36ALQ969Q0 106 aaKnown RBP7.07□□□□□ -1.28
SYNE1-203ENST00000354674 TOMM7Q9P0U1 55 aa7.07□□□□□ -1.28
SYNE1-203ENST00000354674 SMIM26A0A096LP01 95 aa7.06□□□□□ -1.28
SYNE1-203ENST00000354674 M0QY20 66 aa7.06□□□□□ -1.28
SYNE1-203ENST00000354674 CCKP06307 115 aa7.06□□□□□ -1.28
SYNE1-203ENST00000354674 C11orf68Q9H3H3 251 aaKnown RBP7.06□□□□□ -1.28
SYNE1-203ENST00000354674 DGAT2L7PQ6IED9 249 aa7.05□□□□□ -1.28
SYNE1-203ENST00000354674 DAD1P61803 113 aa7.04□□□□□ -1.28
SYNE1-203ENST00000354674 DEFB135Q30KP9 77 aa7.04□□□□□ -1.28
SYNE1-203ENST00000354674 LINC00612Q8N6U2 182 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms