RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 S100A2P29034 98 aa14.23□□□□□ -0.13
SHMT1-203ENST00000354098 C5orf52A6NGY3 159 aa14.22□□□□□ -0.13
SHMT1-203ENST00000354098 F8WDY8 70 aa14.22□□□□□ -0.13
SHMT1-203ENST00000354098 PLNP26678 52 aa14.22□□□□□ -0.13
SHMT1-203ENST00000354098 PET117Q6UWS5 81 aa14.22□□□□□ -0.13
SHMT1-203ENST00000354098 IGKCP01834 107 aa14.21□□□□□ -0.13
SHMT1-203ENST00000354098 CKS1BP61024 79 aa14.21□□□□□ -0.13
SHMT1-203ENST00000354098 C6orf48Q9UBA6 75 aa14.21□□□□□ -0.13
SHMT1-203ENST00000354098 LINC01545Q5VT33 79 aa14.2□□□□□ -0.14
SHMT1-203ENST00000354098 PANO1I0J062 215 aa14.2□□□□□ -0.14
SHMT1-203ENST00000354098 HAMPP81172 84 aa14.2□□□□□ -0.14
SHMT1-203ENST00000354098 Q6ZSA8 131 aa14.2□□□□□ -0.14
SHMT1-203ENST00000354098 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.18□□□□□ -0.14
SHMT1-203ENST00000354098 CHTF8P0CG12 524 aa14.17□□□□□ -0.14
SHMT1-203ENST00000354098 XGP55808 180 aa14.17□□□□□ -0.14
SHMT1-203ENST00000354098 RNF151Q2KHN1 245 aa14.17□□□□□ -0.14
SHMT1-203ENST00000354098 C9orf116Q5BN46 136 aaPredicted RBP14.17□□□□□ -0.14
SHMT1-203ENST00000354098 A0A096LNI7 61 aa14.15□□□□□ -0.14
SHMT1-203ENST00000354098 TRBV30A0A0K0K1B3 111 aa14.15□□□□□ -0.14
SHMT1-203ENST00000354098 CDK2AP2O75956 126 aa14.15□□□□□ -0.14
SHMT1-203ENST00000354098 CXCL5P42830 114 aa14.15□□□□□ -0.14
SHMT1-203ENST00000354098 DNAH8Q96JB1 4490 aa14.15□□□□□ -0.14
SHMT1-203ENST00000354098 IGKV2-24A0A0C4DH68 120 aa14.14□□□□□ -0.15
SHMT1-203ENST00000354098 TMA7Q9Y2S6 64 aaKnown RBP14.14□□□□□ -0.15
SHMT1-203ENST00000354098 APOBP04114 4563 aaKnown RBP14.14□□□□□ -0.15
SHMT1-203ENST00000354098 KIAA1109Q2LD37 5005 aa14.14□□□□□ -0.15
SHMT1-203ENST00000354098 LOC107984640A0A0U1RRK4 108 aa14.14□□□□□ -0.15
SHMT1-203ENST00000354098 RPL18AQ02543 176 aaKnown RBP14.12□□□□□ -0.15
SHMT1-203ENST00000354098 GAGE2BQ13066 116 aa14.12□□□□□ -0.15
SHMT1-203ENST00000354098 CIRBPQ14011 172 aaKnown RBP14.1□□□□□ -0.15
SHMT1-203ENST00000354098 Q6ZRP5 223 aa14.1□□□□□ -0.15
SHMT1-203ENST00000354098 SCXQ7RTU7 201 aa14.1□□□□□ -0.15
SHMT1-203ENST00000354098 SPACA4Q8TDM5 124 aa14.1□□□□□ -0.15
SHMT1-203ENST00000354098 PTTG1IPP53801 180 aa14.1□□□□□ -0.15
SHMT1-203ENST00000354098 CIRBP-AS1Q8TBR5 109 aa14.1□□□□□ -0.15
SHMT1-203ENST00000354098 C20orf202A1L168 122 aa14.09□□□□□ -0.15
SHMT1-203ENST00000354098 TLX1NBP0CAT3 122 aa14.09□□□□□ -0.15
SHMT1-203ENST00000354098 TSPEAR-AS2P59090 65 aa14.09□□□□□ -0.15
SHMT1-203ENST00000354098 MAJINQ3KP22 176 aa14.09□□□□□ -0.15
SHMT1-203ENST00000354098 STPG4Q8N801 248 aa14.09□□□□□ -0.15
SHMT1-203ENST00000354098 DPH3Q96FX2 82 aa14.09□□□□□ -0.15
SHMT1-203ENST00000354098 ZNF625Q96I27 306 aaPredicted RBP14.09□□□□□ -0.15
SHMT1-203ENST00000354098 PKIGQ9Y2B9 76 aa14.09□□□□□ -0.15
SHMT1-203ENST00000354098 LEPROTO15243 131 aa14.08□□□□□ -0.16
SHMT1-203ENST00000354098 HERVK_113P61574 105 aa14.08□□□□□ -0.16
SHMT1-203ENST00000354098 ATOH7Q8N100 152 aa14.08□□□□□ -0.16
SHMT1-203ENST00000354098 NDUFC2-KCTD14E9PQ53 114 aa14.07□□□□□ -0.16
SHMT1-203ENST00000354098 GAGE2EQ4V326 116 aa14.07□□□□□ -0.16
SHMT1-203ENST00000354098 GAGE2DQ9UEU5 116 aa14.07□□□□□ -0.16
SHMT1-203ENST00000354098 A0A087WYN8 130 aa14.05□□□□□ -0.16
SHMT1-203ENST00000354098 PLEKHB2Q96CS7 222 aa14.05□□□□□ -0.16
SHMT1-203ENST00000354098 RYR1P21817 5038 aa14.05□□□□□ -0.16
SHMT1-203ENST00000354098 E9PLD3 99 aa14.04□□□□□ -0.16
SHMT1-203ENST00000354098 J3QQQ9 107 aa14.04□□□□□ -0.16
SHMT1-203ENST00000354098 LINC00474Q9P2X8 69 aa14.04□□□□□ -0.16
SHMT1-203ENST00000354098 NDUFA12Q9UI09 145 aa14.04□□□□□ -0.16
SHMT1-203ENST00000354098 HSPG2P98160 4391 aa14.03□□□□□ -0.16
SHMT1-203ENST00000354098 KRTAP17-1Q9BYP8 105 aa14.03□□□□□ -0.16
SHMT1-203ENST00000354098 SMR3BP02814 79 aaPredicted RBP14.02□□□□□ -0.16
SHMT1-203ENST00000354098 PFN2P35080 140 aa14.02□□□□□ -0.16
SHMT1-203ENST00000354098 SFTA2Q6UW10 78 aa14.02□□□□□ -0.16
SHMT1-203ENST00000354098 ERG28Q9UKR5 140 aa14.01□□□□□ -0.17
SHMT1-203ENST00000354098 IGKV2D-26A0A0A0MRZ7 120 aa14.01□□□□□ -0.17
SHMT1-203ENST00000354098 LGALS3P17931 250 aaKnown RBP14.01□□□□□ -0.17
SHMT1-203ENST00000354098 PLAC8Q9NZF1 115 aa14.01□□□□□ -0.17
SHMT1-203ENST00000354098 A0A1W2PNN7 141 aa14□□□□□ -0.17
SHMT1-203ENST00000354098 C9orf129Q5T035 196 aaKnown RBP14□□□□□ -0.17
SHMT1-203ENST00000354098 XAGE1AQ9HD64 81 aa13.99□□□□□ -0.17
SHMT1-203ENST00000354098 MYMXA0A1B0GTQ4 84 aa13.98□□□□□ -0.17
SHMT1-203ENST00000354098 SCGB1D1O95968 90 aa13.98□□□□□ -0.17
SHMT1-203ENST00000354098 ANKRD39Q53RE8 183 aa13.98□□□□□ -0.17
SHMT1-203ENST00000354098 FAM168BA1KXE4 195 aa13.98□□□□□ -0.17
SHMT1-203ENST00000354098 AKR1D1P51857 326 aa13.98□□□□□ -0.17
SHMT1-203ENST00000354098 A0A0U1RRA0 63 aa13.97□□□□□ -0.17
SHMT1-203ENST00000354098 HERV-K104P63124 156 aa13.97□□□□□ -0.17
SHMT1-203ENST00000354098 COX17Q14061 63 aa13.96□□□□□ -0.17
SHMT1-203ENST00000354098 NMUP48645 174 aa13.95□□□□□ -0.18
SHMT1-203ENST00000354098 TTTY13Q9BZ97 58 aa13.95□□□□□ -0.18
SHMT1-203ENST00000354098 SMIM13P0DJ93 91 aa13.95□□□□□ -0.18
SHMT1-203ENST00000354098 LINC00158P58513 81 aa13.94□□□□□ -0.18
SHMT1-203ENST00000354098 MEIG1Q5JSS6 88 aa13.94□□□□□ -0.18
SHMT1-203ENST00000354098 KRTAP7-1Q8IUC3 87 aa13.94□□□□□ -0.18
SHMT1-203ENST00000354098 EPM2AB3EWF7 344 aa13.93□□□□□ -0.18
SHMT1-203ENST00000354098 FAM19A5Q7Z5A7 132 aaPredicted RBP13.92□□□□□ -0.18
SHMT1-203ENST00000354098 SND1-IT1Q9HBX3 110 aa13.91□□□□□ -0.18
SHMT1-203ENST00000354098 HERC2O95714 4834 aa13.91□□□□□ -0.18
SHMT1-203ENST00000354098 LINC00528Q8N1L1 170 aa13.91□□□□□ -0.18
SHMT1-203ENST00000354098 Q8N1X5 172 aa13.91□□□□□ -0.18
SHMT1-203ENST00000354098 SERTAD4-AS1Q5TG53 156 aa13.9□□□□□ -0.18
SHMT1-203ENST00000354098 A0A0J9YXY3 114 aa13.89□□□□□ -0.19
SHMT1-203ENST00000354098 ZNF815PA8K554 130 aa13.88□□□□□ -0.19
SHMT1-203ENST00000354098 LINC00587B1AMM8 73 aa13.88□□□□□ -0.19
SHMT1-203ENST00000354098 JOSD1Q15040 202 aaPredicted RBP13.88□□□□□ -0.19
SHMT1-203ENST00000354098 MIR7-3HGQ8N6C7 128 aa13.88□□□□□ -0.19
SHMT1-203ENST00000354098 FAT1Q14517 4588 aa13.88□□□□□ -0.19
SHMT1-203ENST00000354098 HSBP1L1C9JCN9 74 aa13.87□□□□□ -0.19
SHMT1-203ENST00000354098 PHF5AQ7RTV0 110 aaKnown RBP13.87□□□□□ -0.19
SHMT1-203ENST00000354098 PCP2Q8IVA1 136 aa13.87□□□□□ -0.19
SHMT1-203ENST00000354098 DAND5Q8N907 189 aa13.87□□□□□ -0.19
SHMT1-203ENST00000354098 Q5VSD8 79 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms