RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 C16orf95Q9H693 158 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 TRBV6-8A0A0A6YYG3 113 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 LINC00959A0A1B0GUT2 108 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 PLA2G2AP14555 144 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 Q6ZQT0 140 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 FP248Q71RG6 208 aaPredicted RBP4.69□□□□□ -1.66
VPS39-202ENST00000348544 STHQ8IWL8 128 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 Q8NDZ9 215 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 SNURFQ9Y675 71 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 KLKP1Q107X0 134 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 KHDC1LQ5JSQ8 128 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 LINC00482Q8N8I6 264 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 SPATA3Q8NHX4 192 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 RMI2Q96E14 147 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 CHD6Q8TD26 2715 aa4.68□□□□□ -1.66
VPS39-202ENST00000348544 GIG44P09565 113 aaPredicted RBP4.68□□□□□ -1.66
VPS39-202ENST00000348544 LINC01547P58512 204 aaPredicted RBP4.68□□□□□ -1.66
VPS39-202ENST00000348544 PRO0628Q9UI54 55 aa4.68□□□□□ -1.66
VPS39-202ENST00000348544 MYO9AB2RTY4 2548 aa4.68□□□□□ -1.66
VPS39-202ENST00000348544 USP9YO00507 2555 aaPredicted RBP4.68□□□□□ -1.66
VPS39-202ENST00000348544 TRGV2A0A075B6R0 118 aa4.68□□□□□ -1.66
VPS39-202ENST00000348544 F8WDY8 70 aa4.68□□□□□ -1.66
VPS39-202ENST00000348544 C6orf99Q4VX62 202 aa4.68□□□□□ -1.66
VPS39-202ENST00000348544 TMEM86BQ8N661 226 aa4.68□□□□□ -1.66
VPS39-202ENST00000348544 MAPK1IP1LQ8NDC0 245 aa4.68□□□□□ -1.66
VPS39-202ENST00000348544 JMJD1CQ15652 2540 aa4.67□□□□□ -1.66
VPS39-202ENST00000348544 C4orf3Q8WVX3 66 aa4.67□□□□□ -1.66
VPS39-202ENST00000348544 SETXQ7Z333 2677 aaKnown RBP4.67□□□□□ -1.66
VPS39-202ENST00000348544 ITPR1Q14643 2758 aa4.67□□□□□ -1.66
VPS39-202ENST00000348544 F8WEM9 126 aa4.67□□□□□ -1.66
VPS39-202ENST00000348544 BCE1O60756 84 aa4.67□□□□□ -1.66
VPS39-202ENST00000348544 Q6ZVQ6 151 aa4.67□□□□□ -1.66
VPS39-202ENST00000348544 Q8IZM0 81 aa4.67□□□□□ -1.66
VPS39-202ENST00000348544 LOC110117498A0A087WWA1 95 aa4.66□□□□□ -1.66
VPS39-202ENST00000348544 TRGV4A0A0C4DH28 118 aa4.66□□□□□ -1.66
VPS39-202ENST00000348544 GNLYP22749 145 aa4.66□□□□□ -1.66
VPS39-202ENST00000348544 RBM3P98179 157 aaKnown RBP4.66□□□□□ -1.66
VPS39-202ENST00000348544 CLPSL2Q6UWE3 100 aa4.66□□□□□ -1.66
VPS39-202ENST00000348544 LINC00575Q6W349 94 aa4.66□□□□□ -1.66
VPS39-202ENST00000348544 Q6YL49 198 aa4.66□□□□□ -1.66
VPS39-202ENST00000348544 NIPBLQ6KC79 2804 aaeCLIP4.66□□□□□ -1.66
VPS39-202ENST00000348544 WNK1Q9H4A3 2382 aa4.66□□□□□ -1.66
VPS39-202ENST00000348544 HAMPP81172 84 aa4.66□□□□□ -1.66
VPS39-202ENST00000348544 C9orf116Q5BN46 136 aaPredicted RBP4.66□□□□□ -1.66
VPS39-202ENST00000348544 LINC00474Q9P2X8 69 aa4.66□□□□□ -1.66
VPS39-202ENST00000348544 TLN2Q9Y4G6 2542 aa4.65□□□□□ -1.66
VPS39-202ENST00000348544 NCOR2Q9Y618 2525 aa4.65□□□□□ -1.66
VPS39-202ENST00000348544 J3QLI3 93 aa4.65□□□□□ -1.66
VPS39-202ENST00000348544 ZNF561-AS1K7EIQ3 104 aa4.65□□□□□ -1.66
VPS39-202ENST00000348544 KIAA0087Q14695 138 aa4.65□□□□□ -1.66
VPS39-202ENST00000348544 C6orf223Q8N319 242 aa4.65□□□□□ -1.66
VPS39-202ENST00000348544 WFDC10AQ9H1F0 79 aa4.65□□□□□ -1.66
VPS39-202ENST00000348544 SMIM26A0A096LP01 95 aa4.65□□□□□ -1.67
VPS39-202ENST00000348544 A0A1W2PRX2 142 aa4.65□□□□□ -1.67
VPS39-202ENST00000348544 ZNF843Q8N446 348 aa4.65□□□□□ -1.67
VPS39-202ENST00000348544 LINC01356Q8N9X3 169 aa4.65□□□□□ -1.67
VPS39-202ENST00000348544 TM2D3Q9BRN9 247 aa4.65□□□□□ -1.67
VPS39-202ENST00000348544 FBN2P35556 2912 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 UTP20O75691 2785 aaKnown RBP4.64□□□□□ -1.67
VPS39-202ENST00000348544 FSHBP01225 129 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 LCE2CQ5TA81 110 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 C11orf44Q8N8P7 122 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 WFDC11Q8NEX6 87 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 C16orf74Q96GX8 76 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 CHD8Q9HCK8 2581 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 TRBV7-4A0A0J9YYF1 115 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 TNP2Q05952 138 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 Q8N3U1 123 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 LAMTOR3Q9UHA4 124 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 USP9XQ93008 2570 aaPredicted RBP4.64□□□□□ -1.67
VPS39-202ENST00000348544 CR1P17927 2039 aa4.64□□□□□ -1.67
VPS39-202ENST00000348544 TRBV7-6A0A0J9YX20 115 aa4.63□□□□□ -1.67
VPS39-202ENST00000348544 RPL35AP18077 110 aaKnown RBP4.63□□□□□ -1.67
VPS39-202ENST00000348544 SCXQ7RTU7 201 aa4.63□□□□□ -1.67
VPS39-202ENST00000348544 C1orf43Q9BWL3 253 aa4.63□□□□□ -1.67
VPS39-202ENST00000348544 POLQO75417 2590 aa4.63□□□□□ -1.67
VPS39-202ENST00000348544 FLNCQ14315 2725 aa4.63□□□□□ -1.67
VPS39-202ENST00000348544 CXCL6P80162 114 aa4.63□□□□□ -1.67
VPS39-202ENST00000348544 C9orf66Q5T8R8 295 aa4.62□□□□□ -1.67
VPS39-202ENST00000348544 CSNK1G2-AS1Q8NCQ2 148 aa4.62□□□□□ -1.67
VPS39-202ENST00000348544 PKIGQ9Y2B9 76 aa4.62□□□□□ -1.67
VPS39-202ENST00000348544 EPG5Q9HCE0 2579 aa4.62□□□□□ -1.67
VPS39-202ENST00000348544 COX17Q14061 63 aa4.62□□□□□ -1.67
VPS39-202ENST00000348544 Q6ZQY7 126 aa4.62□□□□□ -1.67
VPS39-202ENST00000348544 LINC00269Q8N2A0 174 aa4.62□□□□□ -1.67
VPS39-202ENST00000348544 A0A1B0GUV1 79 aa4.61□□□□□ -1.67
VPS39-202ENST00000348544 FAM229BQ4G0N7 80 aa4.61□□□□□ -1.67
VPS39-202ENST00000348544 MUC7Q8TAX7 377 aa4.61□□□□□ -1.67
VPS39-202ENST00000348544 IGHV4-28A0A0C4DH34 117 aa4.61□□□□□ -1.67
VPS39-202ENST00000348544 CFAP46Q8IYW2 2715 aa4.61□□□□□ -1.67
VPS39-202ENST00000348544 ANKRD17O75179 2603 aaKnown RBP4.61□□□□□ -1.67
VPS39-202ENST00000348544 IGLV10-54A0A075B6I4 117 aa4.6□□□□□ -1.67
VPS39-202ENST00000348544 MIFP14174 115 aa4.6□□□□□ -1.67
VPS39-202ENST00000348544 GYPEP15421 78 aa4.6□□□□□ -1.67
VPS39-202ENST00000348544 C10orf25Q5T742 122 aa4.6□□□□□ -1.67
VPS39-202ENST00000348544 DOPEY1Q5JWR5 2465 aa4.6□□□□□ -1.67
VPS39-202ENST00000348544 A0A096LPF7 62 aa4.6□□□□□ -1.67
VPS39-202ENST00000348544 IGLV6-57P01721 117 aa4.6□□□□□ -1.67
VPS39-202ENST00000348544 NREPQ16612 68 aa4.6□□□□□ -1.67
VPS39-202ENST00000348544 C19orf73Q9NVV2 129 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 136.9 ms