RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 NHLRC4P0CG21 123 aaPredicted RBP12.76□□□□□ -0.37
SMC4-201ENST00000344722 C10orf25Q5T742 122 aa12.76□□□□□ -0.37
SMC4-201ENST00000344722 AVPP01185 164 aa12.75□□□□□ -0.37
SMC4-201ENST00000344722 ZNF706Q9Y5V0 76 aaPredicted RBP12.75□□□□□ -0.37
SMC4-201ENST00000344722 HCG22E2RYF7 251 aa12.74□□□□□ -0.37
SMC4-201ENST00000344722 SPATA3Q8NHX4 192 aa12.74□□□□□ -0.37
SMC4-201ENST00000344722 LINC01006Q8NI28 216 aa12.74□□□□□ -0.37
SMC4-201ENST00000344722 A8MTW9 85 aa12.74□□□□□ -0.37
SMC4-201ENST00000344722 LIMD2Q9BT23 127 aa12.74□□□□□ -0.37
SMC4-201ENST00000344722 LITAFQ99732 161 aa12.73□□□□□ -0.37
SMC4-201ENST00000344722 H0Y9P7 68 aa12.73□□□□□ -0.37
SMC4-201ENST00000344722 SMCR5Q8TEV8 140 aa12.73□□□□□ -0.37
SMC4-201ENST00000344722 C11orf72Q8NBR9 251 aa12.73□□□□□ -0.37
SMC4-201ENST00000344722 IGHV3OR16-9A0A0B4J2B5 98 aa12.72□□□□□ -0.37
SMC4-201ENST00000344722 F8WDY8 70 aa12.72□□□□□ -0.37
SMC4-201ENST00000344722 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.72□□□□□ -0.37
SMC4-201ENST00000344722 C6orf223Q8N319 242 aa12.72□□□□□ -0.37
SMC4-201ENST00000344722 CDSNQ15517 529 aa12.71□□□□□ -0.37
SMC4-201ENST00000344722 PTPRQQ9UMZ3 2332 aa12.71□□□□□ -0.37
SMC4-201ENST00000344722 ZFHX2Q9C0A1 2572 aaPredicted RBP12.71□□□□□ -0.37
SMC4-201ENST00000344722 C2CD3Q4AC94 2353 aa12.71□□□□□ -0.37
SMC4-201ENST00000344722 PLAC8L1A1L4L8 177 aa12.7□□□□□ -0.38
SMC4-201ENST00000344722 LOC110117498A0A087WWA1 95 aa12.7□□□□□ -0.38
SMC4-201ENST00000344722 REG3GQ6UW15 175 aa12.69□□□□□ -0.38
SMC4-201ENST00000344722 Q6ZQT0 140 aa12.69□□□□□ -0.38
SMC4-201ENST00000344722 SPG11Q96JI7 2443 aa12.68□□□□□ -0.38
SMC4-201ENST00000344722 SMIM29Q86T20 159 aa12.68□□□□□ -0.38
SMC4-201ENST00000344722 TRAV10A0A0B4J240 114 aa12.68□□□□□ -0.38
SMC4-201ENST00000344722 C2orf48Q96LS8 159 aa12.68□□□□□ -0.38
SMC4-201ENST00000344722 IGLV1-51P01701 117 aa12.67□□□□□ -0.38
SMC4-201ENST00000344722 SORL1Q92673 2214 aa12.67□□□□□ -0.38
SMC4-201ENST00000344722 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.67□□□□□ -0.38
SMC4-201ENST00000344722 SPINK6Q6UWN8 80 aa12.66□□□□□ -0.38
SMC4-201ENST00000344722 FAM208BQ5VWN6 2430 aa12.65□□□□□ -0.38
SMC4-201ENST00000344722 CSPG4Q6UVK1 2322 aa12.64□□□□□ -0.39
SMC4-201ENST00000344722 A0A087WSZ3 146 aa12.63□□□□□ -0.39
SMC4-201ENST00000344722 A0A1B0GW54 56 aa12.63□□□□□ -0.39
SMC4-201ENST00000344722 IGLV9-49A0A0B4J1Y8 123 aa12.63□□□□□ -0.39
SMC4-201ENST00000344722 PCOTHQ58A44 107 aa12.63□□□□□ -0.39
SMC4-201ENST00000344722 IGHV4-30-4P0DP06 118 aa12.62□□□□□ -0.39
SMC4-201ENST00000344722 PRO3102Q9H379 93 aa12.61□□□□□ -0.39
SMC4-201ENST00000344722 SRCAPQ6ZRS2 3230 aa12.6□□□□□ -0.39
SMC4-201ENST00000344722 TM2D3Q9BRN9 247 aa12.59□□□□□ -0.39
SMC4-201ENST00000344722 Q9BRP9 147 aa12.59□□□□□ -0.39
SMC4-201ENST00000344722 LINC00474Q9P2X8 69 aa12.59□□□□□ -0.39
SMC4-201ENST00000344722 C1orf64Q8NEQ6 169 aa12.58□□□□□ -0.39
SMC4-201ENST00000344722 A0A1W2PPR1 153 aa12.57□□□□□ -0.4
SMC4-201ENST00000344722 KIAA0087Q14695 138 aa12.56□□□□□ -0.4
SMC4-201ENST00000344722 DEFB116Q30KQ4 102 aa12.56□□□□□ -0.4
SMC4-201ENST00000344722 PTPRBP23467 1997 aa12.55□□□□□ -0.4
SMC4-201ENST00000344722 Q6ZRU5 148 aa12.55□□□□□ -0.4
SMC4-201ENST00000344722 ERC2-IT1O76042 136 aa12.55□□□□□ -0.4
SMC4-201ENST00000344722 KLK9Q2XQG4 91 aa12.55□□□□□ -0.4
SMC4-201ENST00000344722 ELOF1P60002 83 aaKnown RBP12.55□□□□□ -0.4
SMC4-201ENST00000344722 IGHV6-1A0A0B4J1U7 121 aa12.54□□□□□ -0.4
SMC4-201ENST00000344722 Q9UF83 564 aa12.53□□□□□ -0.4
SMC4-201ENST00000344722 IL17DQ8TAD2 202 aa12.53□□□□□ -0.4
SMC4-201ENST00000344722 HIVEP2P31629 2446 aa12.52□□□□□ -0.41
SMC4-201ENST00000344722 COL4A2P08572 1712 aa12.52□□□□□ -0.41
SMC4-201ENST00000344722 LYPD5Q6UWN5 251 aa12.52□□□□□ -0.41
SMC4-201ENST00000344722 ACACBO00763 2458 aa12.51□□□□□ -0.41
SMC4-201ENST00000344722 H3BPC8 53 aa12.51□□□□□ -0.41
SMC4-201ENST00000344722 PLA2G2AP14555 144 aa12.49□□□□□ -0.41
SMC4-201ENST00000344722 KLKP1Q107X0 134 aa12.48□□□□□ -0.41
SMC4-201ENST00000344722 C7orf33Q8WU49 177 aa12.47□□□□□ -0.41
SMC4-201ENST00000344722 C16orf95Q9H693 158 aa12.47□□□□□ -0.41
SMC4-201ENST00000344722 INAFM1C9JVW0 142 aa12.46□□□□□ -0.41
SMC4-201ENST00000344722 LY6G6DO95868 133 aa12.46□□□□□ -0.41
SMC4-201ENST00000344722 C6orf48Q9UBA6 75 aa12.46□□□□□ -0.42
SMC4-201ENST00000344722 TP53AIP1Q9HCN2 124 aa12.44□□□□□ -0.42
SMC4-201ENST00000344722 Q8NBF4 154 aa12.43□□□□□ -0.42
SMC4-201ENST00000344722 LINC00336Q6ZUF6 198 aa12.43□□□□□ -0.42
SMC4-201ENST00000344722 OTOGLQ3ZCN5 2332 aa12.43□□□□□ -0.42
SMC4-201ENST00000344722 C22orf24Q9Y442 160 aa12.42□□□□□ -0.42
SMC4-201ENST00000344722 TTC28Q96AY4 2481 aa12.42□□□□□ -0.42
SMC4-201ENST00000344722 EIF4EBP3O60516 100 aaPredicted RBP12.41□□□□□ -0.42
SMC4-201ENST00000344722 Q6ZTC4 211 aa12.41□□□□□ -0.42
SMC4-201ENST00000344722 PTPN13Q12923 2485 aa12.4□□□□□ -0.42
SMC4-201ENST00000344722 ATRXP46100 2492 aa12.39□□□□□ -0.43
SMC4-201ENST00000344722 MUC6Q6W4X9 2439 aa12.39□□□□□ -0.43
SMC4-201ENST00000344722 H7BZZ5 65 aa12.38□□□□□ -0.43
SMC4-201ENST00000344722 PRLHP81277 87 aa12.38□□□□□ -0.43
SMC4-201ENST00000344722 LINC01600Q96MT4 127 aa12.38□□□□□ -0.43
SMC4-201ENST00000344722 IGLV6-57P01721 117 aa12.36□□□□□ -0.43
SMC4-201ENST00000344722 BDP1A6H8Y1 2624 aa12.36□□□□□ -0.43
SMC4-201ENST00000344722 SPAG11AQ6PDA7 123 aa12.36□□□□□ -0.43
SMC4-201ENST00000344722 A0A1B0GU69 56 aa12.34□□□□□ -0.43
SMC4-201ENST00000344722 LINC00167Q96N53 147 aa12.34□□□□□ -0.43
SMC4-201ENST00000344722 CYP4F30PQ9H0H9 118 aa12.34□□□□□ -0.43
SMC4-201ENST00000344722 Q6ZRX8 168 aa12.34□□□□□ -0.43
SMC4-201ENST00000344722 WIPF1O43516 503 aa12.33□□□□□ -0.44
SMC4-201ENST00000344722 GVQW2A0A096LPI5 108 aaPredicted RBP12.33□□□□□ -0.44
SMC4-201ENST00000344722 CIRBP-AS1Q8TBR5 109 aa12.33□□□□□ -0.44
SMC4-201ENST00000344722 ACYP2P14621 99 aa12.32□□□□□ -0.44
SMC4-201ENST00000344722 COL27A1Q8IZC6 1860 aaPredicted RBP12.32□□□□□ -0.44
SMC4-201ENST00000344722 A8MUN3 132 aa12.31□□□□□ -0.44
SMC4-201ENST00000344722 TRAV22A0A0B4J277 110 aa12.31□□□□□ -0.44
SMC4-201ENST00000344722 LINC00476Q8WZB0 136 aa12.3□□□□□ -0.44
SMC4-201ENST00000344722 NAV2Q8IVL1 2488 aa12.3□□□□□ -0.44
SMC4-201ENST00000344722 SERTAD4-AS1Q5TG53 156 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms