RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 IGLV9-49A0A0B4J1Y8 123 aa6.99□□□□□ -1.29
USP54-201ENST00000339859 LINC01546A6NGU7 62 aa6.99□□□□□ -1.29
USP54-201ENST00000339859 CR1P17927 2039 aa6.99□□□□□ -1.29
USP54-201ENST00000339859 C10orf25Q5T742 122 aa6.98□□□□□ -1.29
USP54-201ENST00000339859 ETDBQ3ZM63 59 aa6.98□□□□□ -1.29
USP54-201ENST00000339859 EPG5Q9HCE0 2579 aa6.98□□□□□ -1.29
USP54-201ENST00000339859 C5orf42Q9H799 3197 aa6.98□□□□□ -1.29
USP54-201ENST00000339859 AGRNO00468 2067 aa6.98□□□□□ -1.29
USP54-201ENST00000339859 TCL1BO95988 128 aa6.97□□□□□ -1.29
USP54-201ENST00000339859 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.97□□□□□ -1.29
USP54-201ENST00000339859 URB1-AS1Q96HZ7 61 aa6.97□□□□□ -1.29
USP54-201ENST00000339859 ANAPC13Q9BS18 74 aa6.97□□□□□ -1.29
USP54-201ENST00000339859 NDUFC2O95298 119 aa6.97□□□□□ -1.29
USP54-201ENST00000339859 SMIM11BQ8TCY0 68 aa6.97□□□□□ -1.29
USP54-201ENST00000339859 A0A1B0GX51 115 aa6.96□□□□□ -1.29
USP54-201ENST00000339859 LINC00336Q6ZUF6 198 aa6.96□□□□□ -1.29
USP54-201ENST00000339859 TRBV10-3A0A0K0K1G6 114 aa6.96□□□□□ -1.3
USP54-201ENST00000339859 ABCA12Q86UK0 2595 aa6.96□□□□□ -1.3
USP54-201ENST00000339859 WIPF1O43516 503 aa6.95□□□□□ -1.3
USP54-201ENST00000339859 PLA2G1BP04054 148 aaKnown RBP6.95□□□□□ -1.3
USP54-201ENST00000339859 FASNP49327 2511 aaKnown RBP6.95□□□□□ -1.3
USP54-201ENST00000339859 GIG44P09565 113 aaPredicted RBP6.95□□□□□ -1.3
USP54-201ENST00000339859 HRCT1Q6UXD1 115 aa6.94□□□□□ -1.3
USP54-201ENST00000339859 LINC00612Q8N6U2 182 aa6.94□□□□□ -1.3
USP54-201ENST00000339859 ZFYVE26Q68DK2 2539 aa6.94□□□□□ -1.3
USP54-201ENST00000339859 TRIAP1O43715 76 aa6.94□□□□□ -1.3
USP54-201ENST00000339859 SLPIP03973 132 aa6.94□□□□□ -1.3
USP54-201ENST00000339859 C22orf24Q9Y442 160 aa6.94□□□□□ -1.3
USP54-201ENST00000339859 Q6ZQY7 126 aa6.93□□□□□ -1.3
USP54-201ENST00000339859 APLNQ9ULZ1 77 aa6.93□□□□□ -1.3
USP54-201ENST00000339859 ENHOQ6UWT2 76 aa6.93□□□□□ -1.3
USP54-201ENST00000339859 F8P00451 2351 aa6.93□□□□□ -1.3
USP54-201ENST00000339859 GVQW2A0A096LPI5 108 aaPredicted RBP6.93□□□□□ -1.3
USP54-201ENST00000339859 C14orf132Q9NPU4 83 aa6.93□□□□□ -1.3
USP54-201ENST00000339859 PCNTO95613 3336 aa6.93□□□□□ -1.3
USP54-201ENST00000339859 UPK3BQ9BT76 320 aa6.92□□□□□ -1.3
USP54-201ENST00000339859 TAX1BP3O14907 124 aa6.92□□□□□ -1.3
USP54-201ENST00000339859 TEN1Q86WV5 123 aa6.92□□□□□ -1.3
USP54-201ENST00000339859 IGHV3OR16-9A0A0B4J2B5 98 aa6.92□□□□□ -1.3
USP54-201ENST00000339859 CIRBP-AS1Q8TBR5 109 aa6.91□□□□□ -1.3
USP54-201ENST00000339859 BPY2O14599 106 aa6.91□□□□□ -1.3
USP54-201ENST00000339859 JMJD1CQ15652 2540 aa6.9□□□□□ -1.3
USP54-201ENST00000339859 IGLV5-39A0A0G2JS06 123 aa6.9□□□□□ -1.3
USP54-201ENST00000339859 TSPEAR-AS2P59090 65 aa6.9□□□□□ -1.3
USP54-201ENST00000339859 A0A096LNJ9 63 aa6.9□□□□□ -1.3
USP54-201ENST00000339859 TEX49A0A1B0GTD5 131 aa6.9□□□□□ -1.3
USP54-201ENST00000339859 MP68P56378 58 aa6.9□□□□□ -1.3
USP54-201ENST00000339859 Q6JHZ5 121 aa6.9□□□□□ -1.3
USP54-201ENST00000339859 USP9XQ93008 2570 aaPredicted RBP6.89□□□□□ -1.31
USP54-201ENST00000339859 C6orf48Q9UBA6 75 aa6.89□□□□□ -1.31
USP54-201ENST00000339859 Q6ZRP5 223 aa6.89□□□□□ -1.31
USP54-201ENST00000339859 Q8N3U1 123 aa6.89□□□□□ -1.31
USP54-201ENST00000339859 CCKP06307 115 aa6.89□□□□□ -1.31
USP54-201ENST00000339859 LIMD2Q9BT23 127 aa6.89□□□□□ -1.31
USP54-201ENST00000339859 LINC00310P59036 64 aa6.88□□□□□ -1.31
USP54-201ENST00000339859 SPINK6Q6UWN8 80 aa6.88□□□□□ -1.31
USP54-201ENST00000339859 IGLV5-45A0A087WSX0 123 aa6.88□□□□□ -1.31
USP54-201ENST00000339859 NDUFV3P56181 108 aaKnown RBP6.88□□□□□ -1.31
USP54-201ENST00000339859 Q9BRP9 147 aa6.88□□□□□ -1.31
USP54-201ENST00000339859 PRR3P79522 188 aaKnown RBP6.87□□□□□ -1.31
USP54-201ENST00000339859 XGP55808 180 aa6.87□□□□□ -1.31
USP54-201ENST00000339859 MKI67P46013 3256 aaKnown RBP6.87□□□□□ -1.31
USP54-201ENST00000339859 RPL37AP61513 92 aaKnown RBP6.87□□□□□ -1.31
USP54-201ENST00000339859 C2orf91Q6ZV80 131 aa6.86□□□□□ -1.31
USP54-201ENST00000339859 Q9UF83 564 aa6.86□□□□□ -1.31
USP54-201ENST00000339859 Q8N814 137 aa6.86□□□□□ -1.31
USP54-201ENST00000339859 POLQO75417 2590 aa6.86□□□□□ -1.31
USP54-201ENST00000339859 CASC10Q5T4H9 136 aa6.86□□□□□ -1.31
USP54-201ENST00000339859 ADAMTSL4-AS1Q5T5F5 129 aa6.86□□□□□ -1.31
USP54-201ENST00000339859 IGKV3D-7A0A0C4DH55 119 aa6.85□□□□□ -1.31
USP54-201ENST00000339859 LST1O00453 97 aa6.85□□□□□ -1.31
USP54-201ENST00000339859 RANBP2P49792 3224 aaKnown RBP6.85□□□□□ -1.31
USP54-201ENST00000339859 TNRC18O15417 2968 aaPredicted RBP6.85□□□□□ -1.31
USP54-201ENST00000339859 SMCR5Q8TEV8 140 aa6.84□□□□□ -1.31
USP54-201ENST00000339859 LINC00167Q96N53 147 aa6.84□□□□□ -1.31
USP54-201ENST00000339859 PRLHP81277 87 aa6.84□□□□□ -1.31
USP54-201ENST00000339859 LINC00476Q8WZB0 136 aa6.84□□□□□ -1.31
USP54-201ENST00000339859 A0A087WTM6 91 aa6.84□□□□□ -1.31
USP54-201ENST00000339859 WFDC2Q14508 124 aa6.83□□□□□ -1.32
USP54-201ENST00000339859 USP9YO00507 2555 aaPredicted RBP6.83□□□□□ -1.32
USP54-201ENST00000339859 PHF5AQ7RTV0 110 aaKnown RBP6.83□□□□□ -1.32
USP54-201ENST00000339859 SMIM20Q8N5G0 67 aa6.83□□□□□ -1.32
USP54-201ENST00000339859 ATP5EP2Q5VTU8 51 aa6.82□□□□□ -1.32
USP54-201ENST00000339859 TLN2Q9Y4G6 2542 aa6.82□□□□□ -1.32
USP54-201ENST00000339859 FN1P02751 2386 aaKnown RBP6.82□□□□□ -1.32
USP54-201ENST00000339859 CHKB-CPT1BH3BT56 60 aa6.82□□□□□ -1.32
USP54-201ENST00000339859 IGKV4-1P06312 121 aa6.82□□□□□ -1.32
USP54-201ENST00000339859 J3QL48 77 aa6.82□□□□□ -1.32
USP54-201ENST00000339859 KRTAP21-3Q3LHN1 58 aa6.82□□□□□ -1.32
USP54-201ENST00000339859 MYO9AB2RTY4 2548 aa6.82□□□□□ -1.32
USP54-201ENST00000339859 ZNF292O60281 2723 aa6.81□□□□□ -1.32
USP54-201ENST00000339859 BRCA2P51587 3418 aa6.81□□□□□ -1.32
USP54-201ENST00000339859 FAM19A3Q7Z5A8 133 aa6.81□□□□□ -1.32
USP54-201ENST00000339859 PRR34Q9NV39 138 aa6.81□□□□□ -1.32
USP54-201ENST00000339859 HECTD1Q9ULT8 2610 aa6.81□□□□□ -1.32
USP54-201ENST00000339859 ACANP16112 2415 aa6.8□□□□□ -1.32
USP54-201ENST00000339859 USP24Q9UPU5 2620 aa6.8□□□□□ -1.32
USP54-201ENST00000339859 TRBV7-6A0A0J9YX20 115 aa6.79□□□□□ -1.32
USP54-201ENST00000339859 LINC00575Q6W349 94 aa6.79□□□□□ -1.32
USP54-201ENST00000339859 LAMA3Q16787 3333 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 139.2 ms