RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 UNQ6190/PRO20217Q6UXQ8 127 aa14.34□□□□□ -0.11
SDC3-202ENST00000339394 CARD19Q96LW7 228 aa14.34□□□□□ -0.11
SDC3-202ENST00000339394 C16orf90A8MZG2 172 aa14.34□□□□□ -0.11
SDC3-202ENST00000339394 NDUFA1O15239 70 aa14.34□□□□□ -0.11
SDC3-202ENST00000339394 C10orf25Q5T742 122 aa14.34□□□□□ -0.11
SDC3-202ENST00000339394 GCSHP23434 173 aa14.33□□□□□ -0.12
SDC3-202ENST00000339394 ATOH7Q8N100 152 aa14.31□□□□□ -0.12
SDC3-202ENST00000339394 CXCL5P42830 114 aa14.3□□□□□ -0.12
SDC3-202ENST00000339394 HERVK_113P61574 105 aa14.3□□□□□ -0.12
SDC3-202ENST00000339394 STPG4Q8N801 248 aa14.3□□□□□ -0.12
SDC3-202ENST00000339394 AKR1D1P51857 326 aa14.3□□□□□ -0.12
SDC3-202ENST00000339394 C6orf48Q9UBA6 75 aa14.29□□□□□ -0.12
SDC3-202ENST00000339394 SCGB1D1O95968 90 aa14.28□□□□□ -0.12
SDC3-202ENST00000339394 KRTAP10-1P60331 282 aa14.28□□□□□ -0.12
SDC3-202ENST00000339394 RNF151Q2KHN1 245 aa14.27□□□□□ -0.12
SDC3-202ENST00000339394 SDIM1Q6ZPB5 146 aa14.27□□□□□ -0.12
SDC3-202ENST00000339394 TRBV30A0A0K0K1B3 111 aa14.26□□□□□ -0.13
SDC3-202ENST00000339394 E9PLD3 99 aa14.26□□□□□ -0.13
SDC3-202ENST00000339394 LEPROTO15243 131 aa14.26□□□□□ -0.13
SDC3-202ENST00000339394 TSPEAR-AS2P59090 65 aa14.26□□□□□ -0.13
SDC3-202ENST00000339394 DNAH8Q96JB1 4490 aa14.25□□□□□ -0.13
SDC3-202ENST00000339394 C9orf116Q5BN46 136 aaPredicted RBP14.25□□□□□ -0.13
SDC3-202ENST00000339394 PLEKHB2Q96CS7 222 aa14.25□□□□□ -0.13
SDC3-202ENST00000339394 J3QQQ9 107 aa14.24□□□□□ -0.13
SDC3-202ENST00000339394 ZNF625Q96I27 306 aaPredicted RBP14.24□□□□□ -0.13
SDC3-202ENST00000339394 JOSD1Q15040 202 aaPredicted RBP14.22□□□□□ -0.13
SDC3-202ENST00000339394 SFTA2Q6UW10 78 aa14.22□□□□□ -0.13
SDC3-202ENST00000339394 NDUFA12Q9UI09 145 aa14.22□□□□□ -0.13
SDC3-202ENST00000339394 IGKV2D-26A0A0A0MRZ7 120 aa14.21□□□□□ -0.14
SDC3-202ENST00000339394 MAJINQ3KP22 176 aa14.21□□□□□ -0.14
SDC3-202ENST00000339394 LOC107984640A0A0U1RRK4 108 aa14.2□□□□□ -0.14
SDC3-202ENST00000339394 LGALS3P17931 250 aaKnown RBP14.2□□□□□ -0.14
SDC3-202ENST00000339394 ANKRD39Q53RE8 183 aa14.2□□□□□ -0.14
SDC3-202ENST00000339394 TLX1NBP0CAT3 122 aa14.19□□□□□ -0.14
SDC3-202ENST00000339394 FAM30AQ9NZY2 134 aa14.19□□□□□ -0.14
SDC3-202ENST00000339394 PKIGQ9Y2B9 76 aa14.18□□□□□ -0.14
SDC3-202ENST00000339394 MYMXA0A1B0GTQ4 84 aa14.17□□□□□ -0.14
SDC3-202ENST00000339394 NDUFC2-KCTD14E9PQ53 114 aa14.17□□□□□ -0.14
SDC3-202ENST00000339394 RPL18AQ02543 176 aaKnown RBP14.17□□□□□ -0.14
SDC3-202ENST00000339394 Q6ZRP5 223 aa14.17□□□□□ -0.14
SDC3-202ENST00000339394 APOBP04114 4563 aaKnown RBP14.17□□□□□ -0.14
SDC3-202ENST00000339394 A0A096LNI7 61 aa14.17□□□□□ -0.14
SDC3-202ENST00000339394 IGKV2-24A0A0C4DH68 120 aa14.17□□□□□ -0.14
SDC3-202ENST00000339394 PANO1I0J062 215 aa14.17□□□□□ -0.14
SDC3-202ENST00000339394 CHTF8P0CG12 524 aa14.17□□□□□ -0.14
SDC3-202ENST00000339394 NMUP48645 174 aa14.17□□□□□ -0.14
SDC3-202ENST00000339394 GAGE2BQ13066 116 aa14.17□□□□□ -0.14
SDC3-202ENST00000339394 Q6ZSA8 131 aa14.17□□□□□ -0.14
SDC3-202ENST00000339394 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.17□□□□□ -0.14
SDC3-202ENST00000339394 HSBP1L1C9JCN9 74 aa14.16□□□□□ -0.14
SDC3-202ENST00000339394 PTTG1IPP53801 180 aa14.15□□□□□ -0.14
SDC3-202ENST00000339394 HERV-K104P63124 156 aa14.15□□□□□ -0.14
SDC3-202ENST00000339394 PYY3Q5JQD4 70 aa14.15□□□□□ -0.14
SDC3-202ENST00000339394 ERG28Q9UKR5 140 aa14.15□□□□□ -0.14
SDC3-202ENST00000339394 PFN2P35080 140 aa14.14□□□□□ -0.15
SDC3-202ENST00000339394 TTTY13Q9BZ97 58 aa14.14□□□□□ -0.15
SDC3-202ENST00000339394 GAGE2EQ4V326 116 aa14.13□□□□□ -0.15
SDC3-202ENST00000339394 GAGE2DQ9UEU5 116 aa14.13□□□□□ -0.15
SDC3-202ENST00000339394 COX17Q14061 63 aa14.13□□□□□ -0.15
SDC3-202ENST00000339394 CIRBPQ14011 172 aaKnown RBP14.12□□□□□ -0.15
SDC3-202ENST00000339394 SPACA4Q8TDM5 124 aa14.12□□□□□ -0.15
SDC3-202ENST00000339394 LINC00474Q9P2X8 69 aa14.12□□□□□ -0.15
SDC3-202ENST00000339394 MEIG1Q5JSS6 88 aa14.1□□□□□ -0.15
SDC3-202ENST00000339394 DPH3Q96FX2 82 aa14.1□□□□□ -0.15
SDC3-202ENST00000339394 ZNF815PA8K554 130 aa14.09□□□□□ -0.15
SDC3-202ENST00000339394 PCP2Q8IVA1 136 aa14.09□□□□□ -0.15
SDC3-202ENST00000339394 BIRC6Q9NR09 4857 aa14.09□□□□□ -0.15
SDC3-202ENST00000339394 A0A0U1RRA0 63 aa14.09□□□□□ -0.15
SDC3-202ENST00000339394 SMIM13P0DJ93 91 aa14.09□□□□□ -0.15
SDC3-202ENST00000339394 LINC00158P58513 81 aa14.09□□□□□ -0.15
SDC3-202ENST00000339394 A0A0J9YXY3 114 aa14.08□□□□□ -0.16
SDC3-202ENST00000339394 LINC00587B1AMM8 73 aa14.08□□□□□ -0.16
SDC3-202ENST00000339394 XGP55808 180 aa14.08□□□□□ -0.16
SDC3-202ENST00000339394 HAMPP81172 84 aa14.08□□□□□ -0.16
SDC3-202ENST00000339394 XAGE1AQ9HD64 81 aa14.08□□□□□ -0.16
SDC3-202ENST00000339394 C9orf129Q5T035 196 aaKnown RBP14.06□□□□□ -0.16
SDC3-202ENST00000339394 SCXQ7RTU7 201 aa14.06□□□□□ -0.16
SDC3-202ENST00000339394 CIRBP-AS1Q8TBR5 109 aa14.06□□□□□ -0.16
SDC3-202ENST00000339394 VAMP8Q9BV40 100 aa14.06□□□□□ -0.16
SDC3-202ENST00000339394 PAM16Q9Y3D7 125 aa14.06□□□□□ -0.16
SDC3-202ENST00000339394 A0A087WYN8 130 aa14.05□□□□□ -0.16
SDC3-202ENST00000339394 KIAA1109Q2LD37 5005 aa14.05□□□□□ -0.16
SDC3-202ENST00000339394 CDK2AP2O75956 126 aa14.05□□□□□ -0.16
SDC3-202ENST00000339394 LOC105371267A0A1B0GV96 52 aa14.04□□□□□ -0.16
SDC3-202ENST00000339394 SND1-IT1Q9HBX3 110 aa14.04□□□□□ -0.16
SDC3-202ENST00000339394 SPATA45Q537H7 98 aa14.03□□□□□ -0.16
SDC3-202ENST00000339394 MIR7-3HGQ8N6C7 128 aa14.03□□□□□ -0.16
SDC3-202ENST00000339394 HSPG2P98160 4391 aa14.02□□□□□ -0.16
SDC3-202ENST00000339394 A0A1W2PNN7 141 aa14.02□□□□□ -0.16
SDC3-202ENST00000339394 FAM168BA1KXE4 195 aa14.01□□□□□ -0.17
SDC3-202ENST00000339394 PLAC8Q9NZF1 115 aa14.01□□□□□ -0.17
SDC3-202ENST00000339394 SCGB1D4Q6XE38 83 aa14□□□□□ -0.17
SDC3-202ENST00000339394 DAND5Q8N907 189 aa14□□□□□ -0.17
SDC3-202ENST00000339394 RYR1P21817 5038 aa14□□□□□ -0.17
SDC3-202ENST00000339394 ADAMTSL4-AS1Q5T5F5 129 aa14□□□□□ -0.17
SDC3-202ENST00000339394 LITAFQ99732 161 aa13.99□□□□□ -0.17
SDC3-202ENST00000339394 COX8AP10176 69 aa13.98□□□□□ -0.17
SDC3-202ENST00000339394 EPM2AB3EWF7 344 aa13.97□□□□□ -0.17
SDC3-202ENST00000339394 TIMM17BO60830 172 aa13.97□□□□□ -0.17
SDC3-202ENST00000339394 KRTAP7-1Q8IUC3 87 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms