RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 LINC00469Q8N7U9 141 aa8.89□□□□□ -0.99
LIMS1-201ENST00000332345 SRRM2Q9UQ35 2752 aaKnown RBP8.88□□□□□ -0.99
LIMS1-201ENST00000332345 PTTG1IPP53801 180 aa8.88□□□□□ -0.99
LIMS1-201ENST00000332345 CKS1BP61024 79 aa8.88□□□□□ -0.99
LIMS1-201ENST00000332345 TOMM7Q9P0U1 55 aa8.88□□□□□ -0.99
LIMS1-201ENST00000332345 GHRHP01286 108 aa8.87□□□□□ -0.99
LIMS1-201ENST00000332345 Q8IZM0 81 aa8.87□□□□□ -0.99
LIMS1-201ENST00000332345 IGLV5-45A0A087WSX0 123 aa8.86□□□□□ -0.99
LIMS1-201ENST00000332345 TRBV30A0A0K0K1B3 111 aa8.86□□□□□ -0.99
LIMS1-201ENST00000332345 RPL37AP61513 92 aaKnown RBP8.86□□□□□ -0.99
LIMS1-201ENST00000332345 RPL18AQ02543 176 aaKnown RBP8.86□□□□□ -0.99
LIMS1-201ENST00000332345 C10orf25Q5T742 122 aa8.86□□□□□ -0.99
LIMS1-201ENST00000332345 H3BRM9 83 aa8.85□□□□□ -0.99
LIMS1-201ENST00000332345 HSBP1O75506 76 aa8.85□□□□□ -0.99
LIMS1-201ENST00000332345 C2orf82Q6UX34 121 aa8.85□□□□□ -0.99
LIMS1-201ENST00000332345 C7orf33Q8WU49 177 aa8.85□□□□□ -0.99
LIMS1-201ENST00000332345 C6orf48Q9UBA6 75 aa8.85□□□□□ -0.99
LIMS1-201ENST00000332345 TLX1NBP0CAT3 122 aa8.84□□□□□ -0.99
LIMS1-201ENST00000332345 SMIM1B2RUZ4 78 aa8.83□□□□□ -1
LIMS1-201ENST00000332345 IGLC3P0DOY3 106 aa8.83□□□□□ -1
LIMS1-201ENST00000332345 IFI27L1Q96BM0 104 aa8.83□□□□□ -1
LIMS1-201ENST00000332345 SCO1O75880 301 aa8.82□□□□□ -1
LIMS1-201ENST00000332345 CXCL5P42830 114 aa8.82□□□□□ -1
LIMS1-201ENST00000332345 Q6ZRP5 223 aa8.82□□□□□ -1
LIMS1-201ENST00000332345 COX7B2Q8TF08 81 aa8.82□□□□□ -1
LIMS1-201ENST00000332345 NDUFC2-KCTD14E9PQ53 114 aa8.81□□□□□ -1
LIMS1-201ENST00000332345 F8VRH5 84 aa8.81□□□□□ -1
LIMS1-201ENST00000332345 SPINK8P0C7L1 97 aa8.81□□□□□ -1
LIMS1-201ENST00000332345 KRTAP10-4P60372 401 aaPredicted RBP8.81□□□□□ -1
LIMS1-201ENST00000332345 FAM19A2Q8N3H0 131 aa8.81□□□□□ -1
LIMS1-201ENST00000332345 TRAV12-1A0A0B4J245 112 aa8.8□□□□□ -1
LIMS1-201ENST00000332345 SERF1AO75920 110 aa8.8□□□□□ -1
LIMS1-201ENST00000332345 GAGE2EQ4V326 116 aa8.8□□□□□ -1
LIMS1-201ENST00000332345 C9orf116Q5BN46 136 aaPredicted RBP8.8□□□□□ -1
LIMS1-201ENST00000332345 GAGE2DQ9UEU5 116 aa8.8□□□□□ -1
LIMS1-201ENST00000332345 CHTOPQ9Y3Y2 248 aaKnown RBP8.8□□□□□ -1
LIMS1-201ENST00000332345 A0A1W2PNN7 141 aa8.79□□□□□ -1
LIMS1-201ENST00000332345 FLG2Q5D862 2391 aaPredicted RBP8.79□□□□□ -1
LIMS1-201ENST00000332345 LEPROTL1O95214 131 aa8.78□□□□□ -1
LIMS1-201ENST00000332345 ZNF22P17026 224 aaPredicted RBP8.78□□□□□ -1
LIMS1-201ENST00000332345 TMEM170BQ5T4T1 132 aa8.78□□□□□ -1
LIMS1-201ENST00000332345 C11orf86A6NJI1 115 aa8.77□□□□□ -1.01
LIMS1-201ENST00000332345 HSPB8Q9UJY1 196 aa8.77□□□□□ -1.01
LIMS1-201ENST00000332345 IGLV5-39A0A0G2JS06 123 aa8.76□□□□□ -1.01
LIMS1-201ENST00000332345 LINC00310P59036 64 aa8.76□□□□□ -1.01
LIMS1-201ENST00000332345 NUPR1O60356 82 aa8.75□□□□□ -1.01
LIMS1-201ENST00000332345 FABP4P15090 132 aa8.74□□□□□ -1.01
LIMS1-201ENST00000332345 FAM168BA1KXE4 195 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 H0Y8G0 127 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST1H2BKO60814 126 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST1H2BJP06899 126 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 S100A1P23297 94 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST1H2BOP23527 126 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST1H2BBP33778 126 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST1H2BDP58876 126 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST1H2BCP62807 126 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST2H2BEQ16778 126 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.73□□□□□ -1.01
LIMS1-201ENST00000332345 C9orf129Q5T035 196 aaKnown RBP8.73□□□□□ -1.01
LIMS1-201ENST00000332345 SFTA2Q6UW10 78 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 FAM19A5Q7Z5A7 132 aaPredicted RBP8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST1H2BHQ93079 126 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST1H2BNQ99877 126 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 HIST1H2BMQ99879 126 aa8.73□□□□□ -1.01
LIMS1-201ENST00000332345 PRR3P79522 188 aaKnown RBP8.72□□□□□ -1.01
LIMS1-201ENST00000332345 PHF5AQ7RTV0 110 aaKnown RBP8.72□□□□□ -1.01
LIMS1-201ENST00000332345 TMEM223A0PJW6 202 aa8.71□□□□□ -1.02
LIMS1-201ENST00000332345 ODF1Q14990 250 aa8.71□□□□□ -1.02
LIMS1-201ENST00000332345 XAGE1AQ9HD64 81 aa8.71□□□□□ -1.02
LIMS1-201ENST00000332345 MYCBP2O75592 4640 aa8.71□□□□□ -1.02
LIMS1-201ENST00000332345 KRTAP29-1A8MX34 341 aaPredicted RBP8.7□□□□□ -1.02
LIMS1-201ENST00000332345 HNRNPA3P51991 378 aaKnown RBP8.7□□□□□ -1.02
LIMS1-201ENST00000332345 MAP1LC3CQ9BXW4 147 aa8.7□□□□□ -1.02
LIMS1-201ENST00000332345 M0QXV9 152 aa8.69□□□□□ -1.02
LIMS1-201ENST00000332345 OXTP01178 125 aa8.69□□□□□ -1.02
LIMS1-201ENST00000332345 PLNP26678 52 aa8.69□□□□□ -1.02
LIMS1-201ENST00000332345 COX17Q14061 63 aa8.69□□□□□ -1.02
LIMS1-201ENST00000332345 PFN2P35080 140 aa8.68□□□□□ -1.02
LIMS1-201ENST00000332345 KRTAP7-1Q8IUC3 87 aa8.68□□□□□ -1.02
LIMS1-201ENST00000332345 PSORS1C2Q9UIG4 136 aa8.68□□□□□ -1.02
LIMS1-201ENST00000332345 DPM2O94777 84 aa8.67□□□□□ -1.02
LIMS1-201ENST00000332345 UBE2BP63146 152 aa8.67□□□□□ -1.02
LIMS1-201ENST00000332345 LBHQ53QV2 105 aaPredicted RBP8.67□□□□□ -1.02
LIMS1-201ENST00000332345 PKHD1L1Q86WI1 4243 aa8.67□□□□□ -1.02
LIMS1-201ENST00000332345 ERG28Q9UKR5 140 aa8.67□□□□□ -1.02
LIMS1-201ENST00000332345 C22orf24Q9Y442 160 aa8.67□□□□□ -1.02
LIMS1-201ENST00000332345 TMEM238LA0A1B0GVL6 79 aa8.66□□□□□ -1.02
LIMS1-201ENST00000332345 C1orf137Q5JT78 98 aa8.66□□□□□ -1.02
LIMS1-201ENST00000332345 SPINK6Q6UWN8 80 aa8.66□□□□□ -1.02
LIMS1-201ENST00000332345 ZNF625Q96I27 306 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-201ENST00000332345 PLA2G2DQ9UNK4 145 aa8.66□□□□□ -1.02
LIMS1-201ENST00000332345 DMBT1Q9UGM3 2413 aaPredicted RBP8.65□□□□□ -1.02
LIMS1-201ENST00000332345 IGKCP01834 107 aa8.65□□□□□ -1.02
LIMS1-201ENST00000332345 SERTAD4-AS1Q5TG53 156 aa8.65□□□□□ -1.02
LIMS1-201ENST00000332345 TP73-AS1Q9UF72 201 aa8.65□□□□□ -1.02
LIMS1-201ENST00000332345 ATP6V1G1O75348 118 aa8.64□□□□□ -1.03
LIMS1-201ENST00000332345 HERVK_113P61574 105 aa8.64□□□□□ -1.03
LIMS1-201ENST00000332345 HERV-K104P63124 156 aa8.64□□□□□ -1.03
LIMS1-201ENST00000332345 SRSF9Q13242 221 aaKnown RBP eCLIP8.64□□□□□ -1.03
LIMS1-201ENST00000332345 COA6Q5JTJ3 125 aaKnown RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms