RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 SLPIP03973 132 aa12.75□□□□□ -0.37
CLSTN3-202ENST00000331148 NOTCH2Q04721 2471 aa12.75□□□□□ -0.37
CLSTN3-202ENST00000331148 ANK3Q12955 4377 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-202ENST00000331148 DEFB136Q30KP8 78 aa12.74□□□□□ -0.37
CLSTN3-202ENST00000331148 IL17DQ8TAD2 202 aa12.74□□□□□ -0.37
CLSTN3-202ENST00000331148 UBE2L6O14933 153 aa12.74□□□□□ -0.37
CLSTN3-202ENST00000331148 HILS1P60008 231 aa12.74□□□□□ -0.37
CLSTN3-202ENST00000331148 SS18Q15532 418 aa12.73□□□□□ -0.37
CLSTN3-202ENST00000331148 C18orf65Q6ZTR6 163 aa12.73□□□□□ -0.37
CLSTN3-202ENST00000331148 TMEM243Q9BU79 118 aa12.73□□□□□ -0.37
CLSTN3-202ENST00000331148 KHDC1LQ5JSQ8 128 aa12.73□□□□□ -0.37
CLSTN3-202ENST00000331148 C4orf3Q8WVX3 66 aa12.73□□□□□ -0.37
CLSTN3-202ENST00000331148 XCL2Q9UBD3 114 aa12.73□□□□□ -0.37
CLSTN3-202ENST00000331148 CCKP06307 115 aa12.72□□□□□ -0.37
CLSTN3-202ENST00000331148 OTOGQ6ZRI0 2925 aa12.72□□□□□ -0.37
CLSTN3-202ENST00000331148 C16orf95Q9H693 158 aa12.72□□□□□ -0.37
CLSTN3-202ENST00000331148 ORMDL1Q9P0S3 153 aa12.72□□□□□ -0.37
CLSTN3-202ENST00000331148 HIVEP2P31629 2446 aa12.71□□□□□ -0.37
CLSTN3-202ENST00000331148 IBA57-AS1B1ANH7 110 aa12.71□□□□□ -0.38
CLSTN3-202ENST00000331148 PAX4O43316 350 aa12.7□□□□□ -0.38
CLSTN3-202ENST00000331148 FHL2Q14192 279 aa12.7□□□□□ -0.38
CLSTN3-202ENST00000331148 Q6ZTI0 123 aa12.7□□□□□ -0.38
CLSTN3-202ENST00000331148 LINC01006Q8NI28 216 aa12.7□□□□□ -0.38
CLSTN3-202ENST00000331148 Q5XG85 94 aa12.69□□□□□ -0.38
CLSTN3-202ENST00000331148 MTORP42345 2549 aa12.69□□□□□ -0.38
CLSTN3-202ENST00000331148 PFN2P35080 140 aa12.69□□□□□ -0.38
CLSTN3-202ENST00000331148 C4orf26Q17RF5 130 aa12.69□□□□□ -0.38
CLSTN3-202ENST00000331148 C1orf158Q8N1D5 194 aa12.69□□□□□ -0.38
CLSTN3-202ENST00000331148 CUBNO60494 3623 aa12.69□□□□□ -0.38
CLSTN3-202ENST00000331148 IGKV3OR2-268A0A0C4DH90 116 aa12.68□□□□□ -0.38
CLSTN3-202ENST00000331148 NF1P21359 2839 aa12.68□□□□□ -0.38
CLSTN3-202ENST00000331148 GHRHP01286 108 aa12.68□□□□□ -0.38
CLSTN3-202ENST00000331148 S100A7L2Q5SY68 101 aa12.68□□□□□ -0.38
CLSTN3-202ENST00000331148 ATP5EP2Q5VTU8 51 aa12.68□□□□□ -0.38
CLSTN3-202ENST00000331148 DYNLRB2Q8TF09 96 aa12.67□□□□□ -0.38
CLSTN3-202ENST00000331148 TRAV25A0A0B4J276 109 aa12.67□□□□□ -0.38
CLSTN3-202ENST00000331148 TRBV6-4A0A1B0GX49 114 aa12.67□□□□□ -0.38
CLSTN3-202ENST00000331148 INAFM1C9JVW0 142 aa12.66□□□□□ -0.38
CLSTN3-202ENST00000331148 C11orf44Q8N8P7 122 aa12.66□□□□□ -0.38
CLSTN3-202ENST00000331148 WFDC9Q8NEX5 89 aa12.66□□□□□ -0.38
CLSTN3-202ENST00000331148 IGHV3OR16-9A0A0B4J2B5 98 aa12.65□□□□□ -0.38
CLSTN3-202ENST00000331148 NDUFC2-KCTD14E9PQ53 114 aa12.65□□□□□ -0.38
CLSTN3-202ENST00000331148 LINC00167Q96N53 147 aa12.65□□□□□ -0.38
CLSTN3-202ENST00000331148 TRAV23DV6A0A075B6W5 121 aa12.64□□□□□ -0.39
CLSTN3-202ENST00000331148 NDUFC2O95298 119 aa12.64□□□□□ -0.39
CLSTN3-202ENST00000331148 HRCT1Q6UXD1 115 aa12.64□□□□□ -0.39
CLSTN3-202ENST00000331148 JMJD7-PLA2G4BH0Y9G9 81 aa12.63□□□□□ -0.39
CLSTN3-202ENST00000331148 DEFB114Q30KQ6 69 aa12.63□□□□□ -0.39
CLSTN3-202ENST00000331148 FAM19A1Q7Z5A9 133 aa12.63□□□□□ -0.39
CLSTN3-202ENST00000331148 IGLV4-60A0A075B6I1 120 aa12.63□□□□□ -0.39
CLSTN3-202ENST00000331148 LOC100131303A0A0U1RQF7 123 aa12.63□□□□□ -0.39
CLSTN3-202ENST00000331148 A0A1W2PRX2 142 aa12.63□□□□□ -0.39
CLSTN3-202ENST00000331148 A0A087WZ39 114 aa12.62□□□□□ -0.39
CLSTN3-202ENST00000331148 ODF3L2Q3SX64 289 aa12.62□□□□□ -0.39
CLSTN3-202ENST00000331148 ENHOQ6UWT2 76 aa12.62□□□□□ -0.39
CLSTN3-202ENST00000331148 STHQ8IWL8 128 aa12.62□□□□□ -0.39
CLSTN3-202ENST00000331148 LYPD5Q6UWN5 251 aa12.61□□□□□ -0.39
CLSTN3-202ENST00000331148 NOP10Q9NPE3 64 aaKnown RBP12.6□□□□□ -0.39
CLSTN3-202ENST00000331148 CCL24O00175 119 aa12.6□□□□□ -0.39
CLSTN3-202ENST00000331148 Q8N814 137 aa12.59□□□□□ -0.39
CLSTN3-202ENST00000331148 C11orf68Q9H3H3 251 aaKnown RBP12.59□□□□□ -0.39
CLSTN3-202ENST00000331148 C20orf197Q8N268 126 aa12.59□□□□□ -0.39
CLSTN3-202ENST00000331148 TRBV10-3A0A0K0K1G6 114 aa12.58□□□□□ -0.4
CLSTN3-202ENST00000331148 FLNBO75369 2602 aaKnown RBP12.57□□□□□ -0.4
CLSTN3-202ENST00000331148 TMEM256-PLSCR3K7ERE1 68 aa12.57□□□□□ -0.4
CLSTN3-202ENST00000331148 NANOS2P60321 138 aaKnown RBP12.57□□□□□ -0.4
CLSTN3-202ENST00000331148 HIVEP1P15822 2718 aa12.57□□□□□ -0.4
CLSTN3-202ENST00000331148 FAM236DA0A1B0GTK5 79 aa12.56□□□□□ -0.4
CLSTN3-202ENST00000331148 FAM236CP0DP71 79 aa12.56□□□□□ -0.4
CLSTN3-202ENST00000331148 C6orf226Q5I0X4 101 aa12.56□□□□□ -0.4
CLSTN3-202ENST00000331148 UBL5Q9BZL1 73 aa12.56□□□□□ -0.4
CLSTN3-202ENST00000331148 XCL1P47992 114 aa12.55□□□□□ -0.4
CLSTN3-202ENST00000331148 TRGV2A0A075B6R0 118 aa12.55□□□□□ -0.4
CLSTN3-202ENST00000331148 TRBV6-8A0A0A6YYG3 113 aa12.54□□□□□ -0.4
CLSTN3-202ENST00000331148 NSD1Q96L73 2696 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-202ENST00000331148 LINC00959A0A1B0GUT2 108 aa12.53□□□□□ -0.4
CLSTN3-202ENST00000331148 CYSRT1A8MQ03 144 aa12.53□□□□□ -0.4
CLSTN3-202ENST00000331148 PRR3P79522 188 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-202ENST00000331148 PLAC8L1A1L4L8 177 aa12.52□□□□□ -0.41
CLSTN3-202ENST00000331148 SETD2Q9BYW2 2564 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-202ENST00000331148 FN1P02751 2386 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-202ENST00000331148 SETXQ7Z333 2677 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-202ENST00000331148 TRGV4A0A0C4DH28 118 aa12.51□□□□□ -0.41
CLSTN3-202ENST00000331148 EPM2AB3EWF7 344 aa12.51□□□□□ -0.41
CLSTN3-202ENST00000331148 C2CD3Q4AC94 2353 aa12.5□□□□□ -0.41
CLSTN3-202ENST00000331148 H7BZZ5 65 aa12.5□□□□□ -0.41
CLSTN3-202ENST00000331148 KRTAP10-3P60369 221 aa12.49□□□□□ -0.41
CLSTN3-202ENST00000331148 Q8IZM0 81 aa12.49□□□□□ -0.41
CLSTN3-202ENST00000331148 C16orf74Q96GX8 76 aa12.49□□□□□ -0.41
CLSTN3-202ENST00000331148 TRAV7A0A075B6U4 112 aa12.49□□□□□ -0.41
CLSTN3-202ENST00000331148 SERP1Q9Y6X1 66 aa12.49□□□□□ -0.41
CLSTN3-202ENST00000331148 BCE1O60756 84 aa12.48□□□□□ -0.41
CLSTN3-202ENST00000331148 WNK1Q9H4A3 2382 aa12.47□□□□□ -0.41
CLSTN3-202ENST00000331148 GIG44P09565 113 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-202ENST00000331148 Q6ZQT0 140 aa12.47□□□□□ -0.41
CLSTN3-202ENST00000331148 MRAPQ8TCY5 172 aa12.46□□□□□ -0.41
CLSTN3-202ENST00000331148 C6orf99Q4VX62 202 aa12.44□□□□□ -0.42
CLSTN3-202ENST00000331148 LINC00482Q8N8I6 264 aa12.44□□□□□ -0.42
CLSTN3-202ENST00000331148 LOC110117498A0A087WWA1 95 aa12.44□□□□□ -0.42
CLSTN3-202ENST00000331148 RBM3P98179 157 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms