RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 TMEM89A2RUT3 159 aa5.79□□□□□ -1.48
CIITA-201ENST00000324288 TNFRSF13BO14836 293 aaPredicted RBP5.79□□□□□ -1.48
CIITA-201ENST00000324288 C11orf21Q9P2W6 132 aa5.79□□□□□ -1.48
CIITA-201ENST00000324288 IMUPQ9GZP8 106 aa5.79□□□□□ -1.48
CIITA-201ENST00000324288 MRPS36P82909 103 aaKnown RBP5.78□□□□□ -1.48
CIITA-201ENST00000324288 TRBV7-6A0A0J9YX20 115 aa5.78□□□□□ -1.48
CIITA-201ENST00000324288 LY6G6DO95868 133 aa5.78□□□□□ -1.48
CIITA-201ENST00000324288 DHRS4-AS1Q9P1J3 65 aa5.78□□□□□ -1.48
CIITA-201ENST00000324288 PCSK5Q92824 1860 aa5.78□□□□□ -1.48
CIITA-201ENST00000324288 M0R378 163 aa5.78□□□□□ -1.48
CIITA-201ENST00000324288 PLA2G2AP14555 144 aa5.78□□□□□ -1.48
CIITA-201ENST00000324288 LTBP2Q14767 1821 aa5.78□□□□□ -1.48
CIITA-201ENST00000324288 TRAV10A0A0B4J240 114 aa5.78□□□□□ -1.48
CIITA-201ENST00000324288 CFAP46Q8IYW2 2715 aa5.77□□□□□ -1.48
CIITA-201ENST00000324288 IGHV6-1A0A0B4J1U7 121 aa5.77□□□□□ -1.49
CIITA-201ENST00000324288 NTM-AS1Q6ZSK4 140 aa5.77□□□□□ -1.49
CIITA-201ENST00000324288 PRYO14603 147 aa5.77□□□□□ -1.49
CIITA-201ENST00000324288 Q8N814 137 aa5.77□□□□□ -1.49
CIITA-201ENST00000324288 LINC00959A0A1B0GUT2 108 aa5.77□□□□□ -1.49
CIITA-201ENST00000324288 EIF4EBP1Q13541 118 aaPredicted RBP5.77□□□□□ -1.49
CIITA-201ENST00000324288 CRIP3Q6Q6R5 217 aa5.76□□□□□ -1.49
CIITA-201ENST00000324288 CD164L2Q6UWJ8 174 aa5.76□□□□□ -1.49
CIITA-201ENST00000324288 Q6ZSR3 168 aa5.76□□□□□ -1.49
CIITA-201ENST00000324288 SBSPONQ8IVN8 264 aa5.76□□□□□ -1.49
CIITA-201ENST00000324288 ODF3Q96PU9 254 aa5.76□□□□□ -1.49
CIITA-201ENST00000324288 H0Y9P7 68 aa5.76□□□□□ -1.49
CIITA-201ENST00000324288 COX6A2Q02221 97 aa5.76□□□□□ -1.49
CIITA-201ENST00000324288 ADAMTSL4-AS1Q5T5F5 129 aa5.76□□□□□ -1.49
CIITA-201ENST00000324288 ITPR3Q14573 2671 aa5.76□□□□□ -1.49
CIITA-201ENST00000324288 ZNF706Q9Y5V0 76 aaPredicted RBP5.76□□□□□ -1.49
CIITA-201ENST00000324288 RNASE3P12724 160 aaKnown RBP5.76□□□□□ -1.49
CIITA-201ENST00000324288 EDN2P20800 178 aa5.76□□□□□ -1.49
CIITA-201ENST00000324288 C10orf25Q5T742 122 aa5.75□□□□□ -1.49
CIITA-201ENST00000324288 ZNF580Q9UK33 172 aa5.75□□□□□ -1.49
CIITA-201ENST00000324288 UNQ6190/PRO20217Q6UXQ8 127 aa5.75□□□□□ -1.49
CIITA-201ENST00000324288 SMR3AQ99954 134 aa5.74□□□□□ -1.49
CIITA-201ENST00000324288 SHISA2Q6UWI4 295 aa5.74□□□□□ -1.49
CIITA-201ENST00000324288 C1orf137Q5JT78 98 aa5.74□□□□□ -1.49
CIITA-201ENST00000324288 A8MTW9 85 aa5.73□□□□□ -1.49
CIITA-201ENST00000324288 LINC01547P58512 204 aaPredicted RBP5.73□□□□□ -1.49
CIITA-201ENST00000324288 OXLD1Q5BKU9 147 aa5.73□□□□□ -1.49
CIITA-201ENST00000324288 PRORYQ9H606 182 aa5.73□□□□□ -1.49
CIITA-201ENST00000324288 Q8N3U1 123 aa5.73□□□□□ -1.49
CIITA-201ENST00000324288 C6orf223Q8N319 242 aa5.73□□□□□ -1.49
CIITA-201ENST00000324288 IGLV4-69A0A075B6H9 119 aa5.73□□□□□ -1.49
CIITA-201ENST00000324288 LINC00846Q9NV44 126 aa5.73□□□□□ -1.49
CIITA-201ENST00000324288 NBEAL1Q6ZS30 2694 aa5.73□□□□□ -1.49
CIITA-201ENST00000324288 UNC79Q9P2D8 2635 aa5.73□□□□□ -1.49
CIITA-201ENST00000324288 CYSRT1A8MQ03 144 aa5.72□□□□□ -1.49
CIITA-201ENST00000324288 LELP1Q5T871 98 aa5.72□□□□□ -1.49
CIITA-201ENST00000324288 CDIP1Q9H305 208 aa5.72□□□□□ -1.49
CIITA-201ENST00000324288 ZNF702PQ9H963 129 aa5.72□□□□□ -1.49
CIITA-201ENST00000324288 TRBV6-4A0A1B0GX49 114 aa5.72□□□□□ -1.49
CIITA-201ENST00000324288 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.72□□□□□ -1.49
CIITA-201ENST00000324288 TRBV10-3A0A0K0K1G6 114 aa5.72□□□□□ -1.49
CIITA-201ENST00000324288 POLR2KP53803 58 aaKnown RBP5.72□□□□□ -1.49
CIITA-201ENST00000324288 LINC00242Q5T6M2 205 aa5.72□□□□□ -1.49
CIITA-201ENST00000324288 PLA2G1BP04054 148 aaKnown RBP5.72□□□□□ -1.49
CIITA-201ENST00000324288 BRI3O95415 125 aa5.71□□□□□ -1.49
CIITA-201ENST00000324288 IGIPA6NJ69 53 aa5.71□□□□□ -1.49
CIITA-201ENST00000324288 LINC01556Q5JQF7 62 aa5.71□□□□□ -1.49
CIITA-201ENST00000324288 PYGO1Q9Y3Y4 419 aa5.71□□□□□ -1.49
CIITA-201ENST00000324288 URB1-AS1Q96HZ7 61 aa5.71□□□□□ -1.5
CIITA-201ENST00000324288 CDC42SE2Q9NRR3 84 aa5.71□□□□□ -1.5
CIITA-201ENST00000324288 IGLV5-52A0A0A0MRZ9 124 aa5.71□□□□□ -1.5
CIITA-201ENST00000324288 TMEM254Q8TBM7 123 aa5.71□□□□□ -1.5
CIITA-201ENST00000324288 Q8N6K4 173 aa5.71□□□□□ -1.5
CIITA-201ENST00000324288 IGLV8-61A0A075B6I0 122 aa5.7□□□□□ -1.5
CIITA-201ENST00000324288 STAB2Q8WWQ8 2551 aa5.7□□□□□ -1.5
CIITA-201ENST00000324288 SPAG11AQ6PDA7 123 aa5.7□□□□□ -1.5
CIITA-201ENST00000324288 REG3GQ6UW15 175 aa5.7□□□□□ -1.5
CIITA-201ENST00000324288 NUPR2A6NF83 97 aa5.69□□□□□ -1.5
CIITA-201ENST00000324288 C1orf64Q8NEQ6 169 aa5.69□□□□□ -1.5
CIITA-201ENST00000324288 Q8IZM0 81 aa5.69□□□□□ -1.5
CIITA-201ENST00000324288 MAP1AP78559 2803 aaPredicted RBP5.69□□□□□ -1.5
CIITA-201ENST00000324288 FBXL19-AS1Q494R0 122 aa5.68□□□□□ -1.5
CIITA-201ENST00000324288 LINC00574Q9H8X3 128 aa5.68□□□□□ -1.5
CIITA-201ENST00000324288 PRLHP81277 87 aa5.68□□□□□ -1.5
CIITA-201ENST00000324288 Q9BRP9 147 aa5.68□□□□□ -1.5
CIITA-201ENST00000324288 LINC01006Q8NI28 216 aa5.68□□□□□ -1.5
CIITA-201ENST00000324288 PRO0628Q9UI54 55 aa5.68□□□□□ -1.5
CIITA-201ENST00000324288 IGKV2D-30A0A075B6S6 120 aa5.68□□□□□ -1.5
CIITA-201ENST00000324288 IGKV2-30P06310 120 aa5.68□□□□□ -1.5
CIITA-201ENST00000324288 CENPFP49454 3210 aa5.68□□□□□ -1.5
CIITA-201ENST00000324288 Q6ZSN1 163 aa5.67□□□□□ -1.5
CIITA-201ENST00000324288 RPL28P46779 137 aaKnown RBP5.67□□□□□ -1.5
CIITA-201ENST00000324288 IGLV4-60A0A075B6I1 120 aa5.67□□□□□ -1.5
CIITA-201ENST00000324288 HCG22E2RYF7 251 aa5.67□□□□□ -1.5
CIITA-201ENST00000324288 COX17Q14061 63 aa5.66□□□□□ -1.5
CIITA-201ENST00000324288 COL6A5A8TX70 2615 aa5.66□□□□□ -1.5
CIITA-201ENST00000324288 KLLNB2CW77 178 aa5.66□□□□□ -1.5
CIITA-201ENST00000324288 LINC00474Q9P2X8 69 aa5.66□□□□□ -1.5
CIITA-201ENST00000324288 PSMG3-AS1Q96PY0 264 aa5.65□□□□□ -1.5
CIITA-201ENST00000324288 CHCHD7Q9BUK0 85 aa5.65□□□□□ -1.51
CIITA-201ENST00000324288 VPREB1P12018 145 aa5.65□□□□□ -1.51
CIITA-201ENST00000324288 A0A087WSZ3 146 aa5.65□□□□□ -1.51
CIITA-201ENST00000324288 C11orf71Q6IPW1 123 aa5.65□□□□□ -1.51
CIITA-201ENST00000324288 LINC00575Q6W349 94 aa5.65□□□□□ -1.51
CIITA-201ENST00000324288 MRGPRG-AS1Q2M3A8 158 aa5.65□□□□□ -1.51
CIITA-201ENST00000324288 SMIM1B2RUZ4 78 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms