RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 BEAN1Q3B7T3 259 aa9.59□□□□□ -0.87
RFFL-201ENST00000315249 SS18L2Q9UHA2 77 aa9.59□□□□□ -0.87
RFFL-201ENST00000315249 LAMA3Q16787 3333 aa9.59□□□□□ -0.87
RFFL-201ENST00000315249 REG3GQ6UW15 175 aa9.59□□□□□ -0.87
RFFL-201ENST00000315249 C10orf25Q5T742 122 aa9.59□□□□□ -0.87
RFFL-201ENST00000315249 ZNF73O43830 326 aaPredicted RBP9.59□□□□□ -0.87
RFFL-201ENST00000315249 LINC00242Q5T6M2 205 aa9.58□□□□□ -0.88
RFFL-201ENST00000315249 EGFEM1PQ0D2K5 195 aa9.58□□□□□ -0.88
RFFL-201ENST00000315249 PRR3P79522 188 aaKnown RBP9.57□□□□□ -0.88
RFFL-201ENST00000315249 POM121L12Q8N7R1 296 aa9.57□□□□□ -0.88
RFFL-201ENST00000315249 RANBP2P49792 3224 aaKnown RBP9.57□□□□□ -0.88
RFFL-201ENST00000315249 TEX49A0A1B0GTD5 131 aa9.57□□□□□ -0.88
RFFL-201ENST00000315249 CHD7Q9P2D1 2997 aa9.57□□□□□ -0.88
RFFL-201ENST00000315249 CNFNQ9BYD5 112 aa9.57□□□□□ -0.88
RFFL-201ENST00000315249 ATOX1O00244 68 aa9.56□□□□□ -0.88
RFFL-201ENST00000315249 TMEM258P61165 79 aa9.56□□□□□ -0.88
RFFL-201ENST00000315249 BRCA2P51587 3418 aa9.55□□□□□ -0.88
RFFL-201ENST00000315249 TIMM17BO60830 172 aa9.55□□□□□ -0.88
RFFL-201ENST00000315249 IGIPA6NJ69 53 aa9.54□□□□□ -0.88
RFFL-201ENST00000315249 SDIM1Q6ZPB5 146 aa9.54□□□□□ -0.88
RFFL-201ENST00000315249 PRUNE2Q8WUY3 3088 aa9.54□□□□□ -0.88
RFFL-201ENST00000315249 TRBV10-3A0A0K0K1G6 114 aa9.53□□□□□ -0.88
RFFL-201ENST00000315249 WFDC13Q8IUB5 93 aa9.52□□□□□ -0.88
RFFL-201ENST00000315249 MUC7Q8TAX7 377 aa9.52□□□□□ -0.88
RFFL-201ENST00000315249 NDUFC2-KCTD14E9PQ53 114 aa9.52□□□□□ -0.89
RFFL-201ENST00000315249 ESRGQ1W209 222 aa9.52□□□□□ -0.89
RFFL-201ENST00000315249 ENHOQ6UWT2 76 aa9.52□□□□□ -0.89
RFFL-201ENST00000315249 MRPL55Q7Z7F7 128 aaKnown RBP9.52□□□□□ -0.89
RFFL-201ENST00000315249 SMIM1B2RUZ4 78 aa9.51□□□□□ -0.89
RFFL-201ENST00000315249 A0A1B0GUV1 79 aa9.49□□□□□ -0.89
RFFL-201ENST00000315249 Q6ZRU5 148 aa9.49□□□□□ -0.89
RFFL-201ENST00000315249 C16orf90A8MZG2 172 aa9.49□□□□□ -0.89
RFFL-201ENST00000315249 WWC2-AS2Q96NR7 200 aa9.49□□□□□ -0.89
RFFL-201ENST00000315249 NDUFV3P56181 108 aaKnown RBP9.48□□□□□ -0.89
RFFL-201ENST00000315249 XGP55808 180 aa9.48□□□□□ -0.89
RFFL-201ENST00000315249 SMIM20Q8N5G0 67 aa9.48□□□□□ -0.89
RFFL-201ENST00000315249 LINC00643Q86TS7 51 aa9.47□□□□□ -0.89
RFFL-201ENST00000315249 B5MCH6 92 aa9.47□□□□□ -0.89
RFFL-201ENST00000315249 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.47□□□□□ -0.89
RFFL-201ENST00000315249 MGAM2Q2M2H8 2515 aa9.46□□□□□ -0.89
RFFL-201ENST00000315249 CSDC2Q9Y534 153 aaKnown RBP9.46□□□□□ -0.89
RFFL-201ENST00000315249 FAM229AH3BQW9 127 aa9.46□□□□□ -0.9
RFFL-201ENST00000315249 PRLHP81277 87 aa9.46□□□□□ -0.9
RFFL-201ENST00000315249 RETNLBQ9BQ08 111 aa9.45□□□□□ -0.9
RFFL-201ENST00000315249 A0A0C4DFX4 3053 aa9.45□□□□□ -0.9
RFFL-201ENST00000315249 C11orf72Q8NBR9 251 aa9.44□□□□□ -0.9
RFFL-201ENST00000315249 Q9BRP9 147 aa9.44□□□□□ -0.9
RFFL-201ENST00000315249 HELZ2Q9BYK8 2649 aaKnown RBP9.44□□□□□ -0.9
RFFL-201ENST00000315249 C2orf48Q96LS8 159 aa9.44□□□□□ -0.9
RFFL-201ENST00000315249 CFAP46Q8IYW2 2715 aa9.44□□□□□ -0.9
RFFL-201ENST00000315249 LST1O00453 97 aa9.44□□□□□ -0.9
RFFL-201ENST00000315249 C3orf22Q8N5N4 141 aa9.43□□□□□ -0.9
RFFL-201ENST00000315249 FAM236DA0A1B0GTK5 79 aa9.43□□□□□ -0.9
RFFL-201ENST00000315249 FAM236CP0DP71 79 aa9.43□□□□□ -0.9
RFFL-201ENST00000315249 LINC00315P59091 139 aa9.43□□□□□ -0.9
RFFL-201ENST00000315249 HTTP42858 3142 aa9.42□□□□□ -0.9
RFFL-201ENST00000315249 LAMA2P24043 3122 aaKnown RBP9.41□□□□□ -0.9
RFFL-201ENST00000315249 YPEL4Q96NS1 127 aa9.41□□□□□ -0.9
RFFL-201ENST00000315249 IGHV6-1A0A0B4J1U7 121 aa9.41□□□□□ -0.9
RFFL-201ENST00000315249 A8MTW9 85 aa9.4□□□□□ -0.9
RFFL-201ENST00000315249 AMELXQ99217 191 aa9.4□□□□□ -0.9
RFFL-201ENST00000315249 XIRP2A4UGR9 3374 aa9.4□□□□□ -0.9
RFFL-201ENST00000315249 F8WDY8 70 aa9.4□□□□□ -0.9
RFFL-201ENST00000315249 C22orf24Q9Y442 160 aa9.4□□□□□ -0.9
RFFL-201ENST00000315249 X6R8D5 127 aa9.4□□□□□ -0.9
RFFL-201ENST00000315249 LINC00337Q8N6G1 96 aa9.4□□□□□ -0.91
RFFL-201ENST00000315249 Q6ZVQ6 151 aa9.39□□□□□ -0.91
RFFL-201ENST00000315249 COX8CQ7Z4L0 72 aa9.39□□□□□ -0.91
RFFL-201ENST00000315249 C20orf197Q8N268 126 aa9.39□□□□□ -0.91
RFFL-201ENST00000315249 NBDYA0A0U1RRE5 68 aa9.38□□□□□ -0.91
RFFL-201ENST00000315249 PRYO14603 147 aa9.38□□□□□ -0.91
RFFL-201ENST00000315249 Q8N814 137 aa9.38□□□□□ -0.91
RFFL-201ENST00000315249 FAM30AQ9NZY2 134 aa9.38□□□□□ -0.91
RFFL-201ENST00000315249 TSPEAR-AS2P59090 65 aa9.38□□□□□ -0.91
RFFL-201ENST00000315249 C2orf91Q6ZV80 131 aa9.37□□□□□ -0.91
RFFL-201ENST00000315249 RTL8CO15255 209 aa9.37□□□□□ -0.91
RFFL-201ENST00000315249 ADAMTSL4-AS1Q5T5F5 129 aa9.37□□□□□ -0.91
RFFL-201ENST00000315249 Q8NAQ8 132 aa9.36□□□□□ -0.91
RFFL-201ENST00000315249 DEFB116Q30KQ4 102 aa9.36□□□□□ -0.91
RFFL-201ENST00000315249 FAM19A3Q7Z5A8 133 aa9.36□□□□□ -0.91
RFFL-201ENST00000315249 Q8N3U1 123 aa9.36□□□□□ -0.91
RFFL-201ENST00000315249 LINC00588Q9Y4M8 146 aa9.36□□□□□ -0.91
RFFL-201ENST00000315249 MAST4O15021 2626 aa9.36□□□□□ -0.91
RFFL-201ENST00000315249 ITPR3Q14573 2671 aa9.36□□□□□ -0.91
RFFL-201ENST00000315249 NTM-AS1Q6ZSK4 140 aa9.35□□□□□ -0.91
RFFL-201ENST00000315249 K7EIL1 84 aa9.35□□□□□ -0.91
RFFL-201ENST00000315249 A0A087WYN8 130 aa9.35□□□□□ -0.91
RFFL-201ENST00000315249 KRTAP10-11P60412 298 aa9.35□□□□□ -0.91
RFFL-201ENST00000315249 CHTF8P0CG12 524 aa9.34□□□□□ -0.91
RFFL-201ENST00000315249 ATP5EP2Q5VTU8 51 aa9.34□□□□□ -0.91
RFFL-201ENST00000315249 URB1-AS1Q96HZ7 61 aa9.34□□□□□ -0.91
RFFL-201ENST00000315249 SMCR5Q8TEV8 140 aa9.34□□□□□ -0.91
RFFL-201ENST00000315249 CFAP54Q96N23 3096 aa9.34□□□□□ -0.91
RFFL-201ENST00000315249 FLNAP21333 2647 aaKnown RBP9.33□□□□□ -0.92
RFFL-201ENST00000315249 SPACA4Q8TDM5 124 aa9.33□□□□□ -0.92
RFFL-201ENST00000315249 PRR4Q16378 134 aa9.32□□□□□ -0.92
RFFL-201ENST00000315249 H3BNG1 76 aa9.32□□□□□ -0.92
RFFL-201ENST00000315249 A0A087WSZ3 146 aa9.32□□□□□ -0.92
RFFL-201ENST00000315249 LIMD2Q9BT23 127 aa9.32□□□□□ -0.92
RFFL-201ENST00000315249 J3QL48 77 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms