RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 H3BRM9 83 aa12.07□□□□□ -0.48
HMGA1-201ENST00000311487 J3QQQ9 107 aa12.07□□□□□ -0.48
HMGA1-201ENST00000311487 LEPROTO15243 131 aa12.07□□□□□ -0.48
HMGA1-201ENST00000311487 COX6A2Q02221 97 aa12.07□□□□□ -0.48
HMGA1-201ENST00000311487 SS18Q15532 418 aa12.07□□□□□ -0.48
HMGA1-201ENST00000311487 KRTAP26-1Q6PEX3 210 aa12.06□□□□□ -0.48
HMGA1-201ENST00000311487 HIST1H4GQ99525 98 aa12.06□□□□□ -0.48
HMGA1-201ENST00000311487 FUSP35637 526 aaKnown RBP eCLIP12.05□□□□□ -0.48
HMGA1-201ENST00000311487 UBE2D1P51668 147 aa12.05□□□□□ -0.48
HMGA1-201ENST00000311487 TNP2Q05952 138 aa12.05□□□□□ -0.48
HMGA1-201ENST00000311487 WFDC2Q14508 124 aa12.05□□□□□ -0.48
HMGA1-201ENST00000311487 IGHV3-64A0A075B6Q5 118 aa12.05□□□□□ -0.48
HMGA1-201ENST00000311487 SCGB1D4Q6XE38 83 aa12.05□□□□□ -0.48
HMGA1-201ENST00000311487 LGALS3P17931 250 aaKnown RBP12.04□□□□□ -0.48
HMGA1-201ENST00000311487 LINC00242Q5T6M2 205 aa12.04□□□□□ -0.48
HMGA1-201ENST00000311487 C5orf38Q86SI9 138 aa12.04□□□□□ -0.48
HMGA1-201ENST00000311487 TRAV8-4A0A0B4J246 113 aa12.03□□□□□ -0.48
HMGA1-201ENST00000311487 GTF2H5Q6ZYL4 71 aa12.03□□□□□ -0.48
HMGA1-201ENST00000311487 RMI2Q96E14 147 aa12.03□□□□□ -0.48
HMGA1-201ENST00000311487 C9orf118A6NHY6 69 aa12.02□□□□□ -0.49
HMGA1-201ENST00000311487 FOXI1Q12951 378 aa12.02□□□□□ -0.49
HMGA1-201ENST00000311487 SMIM13P0DJ93 91 aa12.01□□□□□ -0.49
HMGA1-201ENST00000311487 RAB37Q96AX2 223 aa12.01□□□□□ -0.49
HMGA1-201ENST00000311487 FAT2Q9NYQ8 4349 aa12.01□□□□□ -0.49
HMGA1-201ENST00000311487 NHP2Q9NX24 153 aaKnown RBP12.01□□□□□ -0.49
HMGA1-201ENST00000311487 K7ERJ3 54 aa12□□□□□ -0.49
HMGA1-201ENST00000311487 GEMIN7Q9H840 131 aaKnown RBP12□□□□□ -0.49
HMGA1-201ENST00000311487 IGLV5-45A0A087WSX0 123 aa11.99□□□□□ -0.49
HMGA1-201ENST00000311487 IGHV1-58A0A0C4DH39 117 aa11.99□□□□□ -0.49
HMGA1-201ENST00000311487 CD164L2Q6UWJ8 174 aa11.99□□□□□ -0.49
HMGA1-201ENST00000311487 FAM19A3Q7Z5A8 133 aa11.99□□□□□ -0.49
HMGA1-201ENST00000311487 DNAH17Q9UFH2 4485 aa11.99□□□□□ -0.49
HMGA1-201ENST00000311487 LINC00526Q96FQ7 95 aa11.99□□□□□ -0.49
HMGA1-201ENST00000311487 SPANXB1Q9NS25 103 aaPredicted RBP11.99□□□□□ -0.49
HMGA1-201ENST00000311487 LRCOL1A6NCL2 159 aa11.98□□□□□ -0.49
HMGA1-201ENST00000311487 SPINK8P0C7L1 97 aa11.98□□□□□ -0.49
HMGA1-201ENST00000311487 NAA38Q9BRA0 125 aaKnown RBP11.98□□□□□ -0.49
HMGA1-201ENST00000311487 CDKN2A-AS1Q9UH64 79 aa11.98□□□□□ -0.49
HMGA1-201ENST00000311487 GAGE10A6NGK3 116 aa11.98□□□□□ -0.49
HMGA1-201ENST00000311487 USP17L23D6RBM5 183 aa11.98□□□□□ -0.49
HMGA1-201ENST00000311487 H3BUT2 72 aa11.98□□□□□ -0.49
HMGA1-201ENST00000311487 SRSF9Q13242 221 aaKnown RBP eCLIP11.98□□□□□ -0.49
HMGA1-201ENST00000311487 IGHV3OR16-9A0A0B4J2B5 98 aa11.97□□□□□ -0.49
HMGA1-201ENST00000311487 HIGD2BQ4VC39 106 aa11.97□□□□□ -0.49
HMGA1-201ENST00000311487 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.96□□□□□ -0.49
HMGA1-201ENST00000311487 A0A087WTM6 91 aa11.96□□□□□ -0.49
HMGA1-201ENST00000311487 MALP21145 153 aa11.96□□□□□ -0.49
HMGA1-201ENST00000311487 HERVK_113P63121 156 aa11.96□□□□□ -0.49
HMGA1-201ENST00000311487 A0A1B0GWB2 263 aa11.96□□□□□ -0.5
HMGA1-201ENST00000311487 COX7A2LO14548 114 aa11.96□□□□□ -0.5
HMGA1-201ENST00000311487 MTURNQ8N3F0 131 aa11.95□□□□□ -0.5
HMGA1-201ENST00000311487 C15orf56Q8N910 161 aa11.94□□□□□ -0.5
HMGA1-201ENST00000311487 SIGMAR1Q99720 223 aa11.94□□□□□ -0.5
HMGA1-201ENST00000311487 A0A0J9YXY3 114 aa11.93□□□□□ -0.5
HMGA1-201ENST00000311487 K7EP34 96 aa11.93□□□□□ -0.5
HMGA1-201ENST00000311487 A0A1W2PPM0 123 aa11.92□□□□□ -0.5
HMGA1-201ENST00000311487 NDUFA12Q9UI09 145 aa11.92□□□□□ -0.5
HMGA1-201ENST00000311487 PKD1P98161 4303 aa11.91□□□□□ -0.5
HMGA1-201ENST00000311487 IGLV5-39A0A0G2JS06 123 aa11.91□□□□□ -0.5
HMGA1-201ENST00000311487 KRTAP10-2P60368 255 aa11.91□□□□□ -0.5
HMGA1-201ENST00000311487 A0A087WZ39 114 aa11.9□□□□□ -0.5
HMGA1-201ENST00000311487 LINC01620Q4KN68 170 aa11.9□□□□□ -0.5
HMGA1-201ENST00000311487 Q8N814 137 aa11.9□□□□□ -0.5
HMGA1-201ENST00000311487 SMIM1B2RUZ4 78 aa11.9□□□□□ -0.51
HMGA1-201ENST00000311487 LITAFQ99732 161 aa11.9□□□□□ -0.51
HMGA1-201ENST00000311487 TOMM7Q9P0U1 55 aa11.9□□□□□ -0.51
HMGA1-201ENST00000311487 HECTD4Q9Y4D8 3996 aa11.88□□□□□ -0.51
HMGA1-201ENST00000311487 LINC00336Q6ZUF6 198 aa11.88□□□□□ -0.51
HMGA1-201ENST00000311487 PKHD1P08F94 4074 aa11.88□□□□□ -0.51
HMGA1-201ENST00000311487 FABP2P12104 132 aa11.88□□□□□ -0.51
HMGA1-201ENST00000311487 CKS1BP61024 79 aa11.88□□□□□ -0.51
HMGA1-201ENST00000311487 SLPIP03973 132 aa11.87□□□□□ -0.51
HMGA1-201ENST00000311487 DNAH11Q96DT5 4516 aa11.87□□□□□ -0.51
HMGA1-201ENST00000311487 NDUFA1O15239 70 aa11.86□□□□□ -0.51
HMGA1-201ENST00000311487 SPCS1Q9Y6A9 102 aa11.86□□□□□ -0.51
HMGA1-201ENST00000311487 J3QR89 54 aa11.85□□□□□ -0.51
HMGA1-201ENST00000311487 ZNF561-AS1K7EIQ3 104 aa11.85□□□□□ -0.51
HMGA1-201ENST00000311487 APOMO95445 188 aa11.85□□□□□ -0.51
HMGA1-201ENST00000311487 SPAG11BQ08648 103 aa11.85□□□□□ -0.51
HMGA1-201ENST00000311487 MUSTN1Q8IVN3 82 aa11.85□□□□□ -0.51
HMGA1-201ENST00000311487 NTN5Q8WTR8 489 aaPredicted RBP11.85□□□□□ -0.51
HMGA1-201ENST00000311487 ADAMTSL4-AS1Q5T5F5 129 aa11.84□□□□□ -0.51
HMGA1-201ENST00000311487 C2orf82Q6UX34 121 aa11.84□□□□□ -0.51
HMGA1-201ENST00000311487 SPANXDQ9BXN6 97 aa11.84□□□□□ -0.51
HMGA1-201ENST00000311487 SPANXCQ9NY87 97 aa11.84□□□□□ -0.51
HMGA1-201ENST00000311487 A0A1B0GVY2 172 aa11.84□□□□□ -0.51
HMGA1-201ENST00000311487 A4D1N5 150 aa11.84□□□□□ -0.51
HMGA1-201ENST00000311487 CFC1BP0CG36 223 aa11.84□□□□□ -0.51
HMGA1-201ENST00000311487 CFC1P0CG37 223 aa11.84□□□□□ -0.51
HMGA1-201ENST00000311487 PGPEP1Q9NXJ5 209 aa11.84□□□□□ -0.51
HMGA1-201ENST00000311487 GVQW2A0A096LPI5 108 aaPredicted RBP11.83□□□□□ -0.52
HMGA1-201ENST00000311487 TIMM17BO60830 172 aa11.82□□□□□ -0.52
HMGA1-201ENST00000311487 RPL24P83731 157 aaKnown RBP11.82□□□□□ -0.52
HMGA1-201ENST00000311487 EIF4EBP3O60516 100 aaPredicted RBP11.81□□□□□ -0.52
HMGA1-201ENST00000311487 TSPAN13O95857 204 aa11.81□□□□□ -0.52
HMGA1-201ENST00000311487 KIAA0087Q14695 138 aa11.81□□□□□ -0.52
HMGA1-201ENST00000311487 C10orf25Q5T742 122 aa11.81□□□□□ -0.52
HMGA1-201ENST00000311487 IGLV5-52A0A0A0MRZ9 124 aa11.8□□□□□ -0.52
HMGA1-201ENST00000311487 C6orf226Q5I0X4 101 aa11.8□□□□□ -0.52
HMGA1-201ENST00000311487 UNQ6190/PRO20217Q6UXQ8 127 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms