RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 VCX2Q9H322 139 aa8.69□□□□□ -1.02
CCDC88B-201ENST00000301897 CYSLTR1Q9Y271 337 aa8.69□□□□□ -1.02
CCDC88B-201ENST00000301897 FAT4Q6V0I7 4981 aa8.69□□□□□ -1.02
CCDC88B-201ENST00000301897 SEC11AP67812 179 aa8.68□□□□□ -1.02
CCDC88B-201ENST00000301897 PNRC1Q12796 327 aaPredicted RBP8.68□□□□□ -1.02
CCDC88B-201ENST00000301897 AMELXQ99217 191 aa8.68□□□□□ -1.02
CCDC88B-201ENST00000301897 XAGE1AQ9HD64 81 aa8.68□□□□□ -1.02
CCDC88B-201ENST00000301897 F8VRH5 84 aa8.67□□□□□ -1.02
CCDC88B-201ENST00000301897 CXCL5P42830 114 aa8.67□□□□□ -1.02
CCDC88B-201ENST00000301897 FAM19A3Q7Z5A8 133 aa8.67□□□□□ -1.02
CCDC88B-201ENST00000301897 MAP1LC3AQ9H492 121 aa8.67□□□□□ -1.02
CCDC88B-201ENST00000301897 HERVK_113P63121 156 aa8.66□□□□□ -1.02
CCDC88B-201ENST00000301897 CTAG1AP78358 180 aa8.66□□□□□ -1.02
CCDC88B-201ENST00000301897 ORMDL2Q53FV1 153 aa8.66□□□□□ -1.02
CCDC88B-201ENST00000301897 PAPPA-AS1Q5QFB9 102 aa8.66□□□□□ -1.02
CCDC88B-201ENST00000301897 C2orf66Q6UXQ4 117 aa8.66□□□□□ -1.02
CCDC88B-201ENST00000301897 LINC00173Q6ZV60 143 aa8.66□□□□□ -1.02
CCDC88B-201ENST00000301897 K7EMI3 77 aa8.65□□□□□ -1.02
CCDC88B-201ENST00000301897 ZC2HC1BQ5TFG8 222 aa8.65□□□□□ -1.02
CCDC88B-201ENST00000301897 ANAPC16Q96DE5 110 aa8.65□□□□□ -1.02
CCDC88B-201ENST00000301897 LOC389332A0A1B0GUA5 103 aa8.64□□□□□ -1.03
CCDC88B-201ENST00000301897 FAM229BQ4G0N7 80 aa8.64□□□□□ -1.03
CCDC88B-201ENST00000301897 Q8N8P6 123 aa8.64□□□□□ -1.03
CCDC88B-201ENST00000301897 KRTAP9-6A0A140TA67 174 aa8.63□□□□□ -1.03
CCDC88B-201ENST00000301897 G0S2P27469 103 aa8.63□□□□□ -1.03
CCDC88B-201ENST00000301897 TPRXLQ17RH7 258 aa8.63□□□□□ -1.03
CCDC88B-201ENST00000301897 UQCC3Q6UW78 93 aa8.63□□□□□ -1.03
CCDC88B-201ENST00000301897 LINC00167Q96N53 147 aa8.63□□□□□ -1.03
CCDC88B-201ENST00000301897 CDIP1Q9H305 208 aa8.63□□□□□ -1.03
CCDC88B-201ENST00000301897 GEMIN7Q9H840 131 aaKnown RBP8.63□□□□□ -1.03
CCDC88B-201ENST00000301897 TMEM218A2RU14 115 aa8.62□□□□□ -1.03
CCDC88B-201ENST00000301897 IGIPA6NJ69 53 aa8.62□□□□□ -1.03
CCDC88B-201ENST00000301897 MT-ND4LP03901 98 aa8.62□□□□□ -1.03
CCDC88B-201ENST00000301897 ADCYAP1P18509 176 aa8.62□□□□□ -1.03
CCDC88B-201ENST00000301897 LINC00304Q8N9R0 145 aa8.62□□□□□ -1.03
CCDC88B-201ENST00000301897 CDKN2A-AS1Q9UH64 79 aa8.62□□□□□ -1.03
CCDC88B-201ENST00000301897 UBE2AP49459 152 aa8.61□□□□□ -1.03
CCDC88B-201ENST00000301897 KRTAP13-2Q52LG2 175 aa8.61□□□□□ -1.03
CCDC88B-201ENST00000301897 RPL37AP8A6NKH3 93 aa8.6□□□□□ -1.03
CCDC88B-201ENST00000301897 NKAPP1Q8N9T2 125 aa8.6□□□□□ -1.03
CCDC88B-201ENST00000301897 NXT2Q9NPJ8 142 aaKnown RBP8.6□□□□□ -1.03
CCDC88B-201ENST00000301897 IGLV5-37A0A075B6J1 123 aa8.59□□□□□ -1.03
CCDC88B-201ENST00000301897 IGKV2D-26A0A0A0MRZ7 120 aa8.59□□□□□ -1.03
CCDC88B-201ENST00000301897 KRTAP13-1Q8IUC0 172 aa8.59□□□□□ -1.03
CCDC88B-201ENST00000301897 TIMM17AQ99595 171 aa8.59□□□□□ -1.03
CCDC88B-201ENST00000301897 ANAPC11Q9NYG5 84 aa8.59□□□□□ -1.03
CCDC88B-201ENST00000301897 IGLV7-46A0A075B6I9 117 aa8.58□□□□□ -1.04
CCDC88B-201ENST00000301897 PDZD11Q5EBL8 140 aa8.58□□□□□ -1.04
CCDC88B-201ENST00000301897 RETNLBQ9BQ08 111 aa8.58□□□□□ -1.04
CCDC88B-201ENST00000301897 SEC11CQ9BY50 192 aa8.58□□□□□ -1.04
CCDC88B-201ENST00000301897 GAGE10A6NGK3 116 aa8.57□□□□□ -1.04
CCDC88B-201ENST00000301897 COX7B2Q8TF08 81 aa8.57□□□□□ -1.04
CCDC88B-201ENST00000301897 SMIM1B2RUZ4 78 aa8.56□□□□□ -1.04
CCDC88B-201ENST00000301897 C10orf91Q5T1B1 145 aa8.56□□□□□ -1.04
CCDC88B-201ENST00000301897 TOMM6Q96B49 74 aa8.55□□□□□ -1.04
CCDC88B-201ENST00000301897 TINCRA0A1B0GVN0 87 aa8.54□□□□□ -1.04
CCDC88B-201ENST00000301897 ERASQ7Z444 233 aa8.54□□□□□ -1.04
CCDC88B-201ENST00000301897 LINC01549A6NIU2 74 aa8.53□□□□□ -1.04
CCDC88B-201ENST00000301897 COMMD7Q86VX2 200 aa8.53□□□□□ -1.04
CCDC88B-201ENST00000301897 MUC17Q685J3 4493 aa8.52□□□□□ -1.05
CCDC88B-201ENST00000301897 IGKV2-28A0A075B6P5 120 aa8.52□□□□□ -1.05
CCDC88B-201ENST00000301897 TRAV9-1A0A075B6T8 112 aa8.52□□□□□ -1.05
CCDC88B-201ENST00000301897 IGLV5-45A0A087WSX0 123 aa8.52□□□□□ -1.05
CCDC88B-201ENST00000301897 IGKV2D-28P01615 120 aa8.52□□□□□ -1.05
CCDC88B-201ENST00000301897 ATP5LO75964 103 aa8.51□□□□□ -1.05
CCDC88B-201ENST00000301897 RAB5BP61020 215 aa8.51□□□□□ -1.05
CCDC88B-201ENST00000301897 SPAG11AQ6PDA7 123 aa8.51□□□□□ -1.05
CCDC88B-201ENST00000301897 SCGB3A1Q96QR1 104 aa8.51□□□□□ -1.05
CCDC88B-201ENST00000301897 PPDPFQ9H3Y8 114 aa8.51□□□□□ -1.05
CCDC88B-201ENST00000301897 GNB1LQ9BYB4 327 aa8.5□□□□□ -1.05
CCDC88B-201ENST00000301897 MRPL18Q9H0U6 180 aaKnown RBP8.5□□□□□ -1.05
CCDC88B-201ENST00000301897 FP248Q71RG6 208 aaPredicted RBP8.49□□□□□ -1.05
CCDC88B-201ENST00000301897 FAM19A1Q7Z5A9 133 aa8.49□□□□□ -1.05
CCDC88B-201ENST00000301897 H3BRM9 83 aa8.48□□□□□ -1.05
CCDC88B-201ENST00000301897 PRLHP81277 87 aa8.48□□□□□ -1.05
CCDC88B-201ENST00000301897 RPL24P83731 157 aaKnown RBP8.48□□□□□ -1.05
CCDC88B-201ENST00000301897 TMEM126AQ9H061 195 aa8.48□□□□□ -1.05
CCDC88B-201ENST00000301897 SPINK8P0C7L1 97 aa8.47□□□□□ -1.05
CCDC88B-201ENST00000301897 KIAA1644Q3SXP7 199 aa8.47□□□□□ -1.05
CCDC88B-201ENST00000301897 PLEKHB2Q96CS7 222 aa8.47□□□□□ -1.05
CCDC88B-201ENST00000301897 CST9LQ9H4G1 147 aa8.47□□□□□ -1.05
CCDC88B-201ENST00000301897 RHEBQ15382 184 aa8.46□□□□□ -1.06
CCDC88B-201ENST00000301897 CBLN2Q8IUK8 224 aa8.46□□□□□ -1.06
CCDC88B-201ENST00000301897 LINC00337Q8N6G1 96 aa8.46□□□□□ -1.06
CCDC88B-201ENST00000301897 SCO1O75880 301 aa8.45□□□□□ -1.06
CCDC88B-201ENST00000301897 VPREB1P12018 145 aa8.45□□□□□ -1.06
CCDC88B-201ENST00000301897 S100PP25815 95 aa8.45□□□□□ -1.06
CCDC88B-201ENST00000301897 PFN2P35080 140 aa8.45□□□□□ -1.06
CCDC88B-201ENST00000301897 COX17Q14061 63 aa8.45□□□□□ -1.06
CCDC88B-201ENST00000301897 C4orf48Q5BLP8 95 aa8.45□□□□□ -1.06
CCDC88B-201ENST00000301897 LINC01546A6NGU7 62 aa8.44□□□□□ -1.06
CCDC88B-201ENST00000301897 TMEM238C9JI98 176 aa8.44□□□□□ -1.06
CCDC88B-201ENST00000301897 PMVKQ15126 192 aa8.44□□□□□ -1.06
CCDC88B-201ENST00000301897 COX19Q49B96 90 aa8.44□□□□□ -1.06
CCDC88B-201ENST00000301897 C3orf22Q8N5N4 141 aa8.44□□□□□ -1.06
CCDC88B-201ENST00000301897 M0R378 163 aa8.43□□□□□ -1.06
CCDC88B-201ENST00000301897 LINC01547P58512 204 aaPredicted RBP8.43□□□□□ -1.06
CCDC88B-201ENST00000301897 SND1-IT1Q9HBX3 110 aa8.43□□□□□ -1.06
CCDC88B-201ENST00000301897 RPS10P5Q9NQ39 176 aa8.43□□□□□ -1.06
CCDC88B-201ENST00000301897 ZNF706Q9Y5V0 76 aaPredicted RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms