RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 SSBP3-AS1Q7Z2R9 100 aa8.82□□□□□ -1
PCF11-201ENST00000298281 COX7CP15954 63 aa8.82□□□□□ -1
PCF11-201ENST00000298281 MRPS12O15235 138 aaKnown RBP8.82□□□□□ -1
PCF11-201ENST00000298281 Q9UF83 564 aa8.82□□□□□ -1
PCF11-201ENST00000298281 LINC00959A0A1B0GUT2 108 aa8.82□□□□□ -1
PCF11-201ENST00000298281 EIF4EBP1Q13541 118 aaPredicted RBP8.82□□□□□ -1
PCF11-201ENST00000298281 ZNF702PQ9H963 129 aa8.81□□□□□ -1
PCF11-201ENST00000298281 BRWD1-AS2P59051 145 aa8.81□□□□□ -1
PCF11-201ENST00000298281 CYSRT1A8MQ03 144 aa8.81□□□□□ -1
PCF11-201ENST00000298281 C19orf84I3L1E1 186 aa8.8□□□□□ -1
PCF11-201ENST00000298281 C11orf71Q6IPW1 123 aa8.8□□□□□ -1
PCF11-201ENST00000298281 NRACQ8N912 160 aa8.8□□□□□ -1
PCF11-201ENST00000298281 LTBP2Q14767 1821 aa8.8□□□□□ -1
PCF11-201ENST00000298281 CRIP1P50238 77 aa8.79□□□□□ -1
PCF11-201ENST00000298281 KLLNB2CW77 178 aa8.79□□□□□ -1
PCF11-201ENST00000298281 Q8IZM0 81 aa8.78□□□□□ -1
PCF11-201ENST00000298281 TSHBP01222 138 aa8.78□□□□□ -1
PCF11-201ENST00000298281 C9orf116Q5BN46 136 aaPredicted RBP8.78□□□□□ -1
PCF11-201ENST00000298281 CHCHD7Q9BUK0 85 aa8.78□□□□□ -1
PCF11-201ENST00000298281 Q6JHZ5 121 aa8.78□□□□□ -1
PCF11-201ENST00000298281 CCDC179H3BU77 68 aa8.77□□□□□ -1
PCF11-201ENST00000298281 BRI3O95415 125 aa8.77□□□□□ -1.01
PCF11-201ENST00000298281 COX6A2Q02221 97 aa8.77□□□□□ -1.01
PCF11-201ENST00000298281 LINC01006Q8NI28 216 aa8.77□□□□□ -1.01
PCF11-201ENST00000298281 A0A087WSZ3 146 aa8.76□□□□□ -1.01
PCF11-201ENST00000298281 PRM2P04554 102 aa8.76□□□□□ -1.01
PCF11-201ENST00000298281 MAPKAPK5-AS1Q8N8E1 139 aa8.76□□□□□ -1.01
PCF11-201ENST00000298281 COL4A4P53420 1690 aaPredicted RBP8.76□□□□□ -1.01
PCF11-201ENST00000298281 NTM-AS1Q6ZSK4 140 aa8.76□□□□□ -1.01
PCF11-201ENST00000298281 C1orf64Q8NEQ6 169 aa8.76□□□□□ -1.01
PCF11-201ENST00000298281 Q8N6K4 173 aa8.75□□□□□ -1.01
PCF11-201ENST00000298281 WISP2O76076 250 aa8.75□□□□□ -1.01
PCF11-201ENST00000298281 POLR2KP53803 58 aaKnown RBP8.75□□□□□ -1.01
PCF11-201ENST00000298281 ZNF295-AS1Q8N0V1 137 aa8.75□□□□□ -1.01
PCF11-201ENST00000298281 PIEZO2Q9H5I5 2752 aa8.75□□□□□ -1.01
PCF11-201ENST00000298281 APLNQ9ULZ1 77 aa8.74□□□□□ -1.01
PCF11-201ENST00000298281 PRR3P79522 188 aaKnown RBP8.74□□□□□ -1.01
PCF11-201ENST00000298281 ATP11AUNQ6ZP68 121 aa8.74□□□□□ -1.01
PCF11-201ENST00000298281 Q6ZTC4 211 aa8.74□□□□□ -1.01
PCF11-201ENST00000298281 FN1P02751 2386 aaKnown RBP8.74□□□□□ -1.01
PCF11-201ENST00000298281 C18orf65Q6ZTR6 163 aa8.74□□□□□ -1.01
PCF11-201ENST00000298281 IGLV1-40P01703 118 aa8.73□□□□□ -1.01
PCF11-201ENST00000298281 EDN2P20800 178 aa8.73□□□□□ -1.01
PCF11-201ENST00000298281 JMJD1CQ15652 2540 aa8.73□□□□□ -1.01
PCF11-201ENST00000298281 UNQ6190/PRO20217Q6UXQ8 127 aa8.73□□□□□ -1.01
PCF11-201ENST00000298281 CNFNQ9BYD5 112 aa8.73□□□□□ -1.01
PCF11-201ENST00000298281 TRBV10-3A0A0K0K1G6 114 aa8.73□□□□□ -1.01
PCF11-201ENST00000298281 Q8N814 137 aa8.73□□□□□ -1.01
PCF11-201ENST00000298281 Q6ZPA2 131 aa8.72□□□□□ -1.01
PCF11-201ENST00000298281 C1orf229Q6ZS94 237 aaPredicted RBP8.72□□□□□ -1.01
PCF11-201ENST00000298281 EGFEM1PQ0D2K5 195 aa8.72□□□□□ -1.01
PCF11-201ENST00000298281 MOBPQ13875 183 aa8.72□□□□□ -1.01
PCF11-201ENST00000298281 CDC42SE2Q9NRR3 84 aa8.71□□□□□ -1.01
PCF11-201ENST00000298281 COL4A3Q01955 1670 aa8.71□□□□□ -1.01
PCF11-201ENST00000298281 C6orf48Q9UBA6 75 aa8.71□□□□□ -1.01
PCF11-201ENST00000298281 ABCA12Q86UK0 2595 aa8.71□□□□□ -1.01
PCF11-201ENST00000298281 F8WDY8 70 aa8.71□□□□□ -1.02
PCF11-201ENST00000298281 C10orf99Q6UWK7 81 aa8.71□□□□□ -1.02
PCF11-201ENST00000298281 TYMSOSQ8TAI1 123 aa8.71□□□□□ -1.02
PCF11-201ENST00000298281 IGF2RP11717 2491 aa8.71□□□□□ -1.02
PCF11-201ENST00000298281 CR1P17927 2039 aa8.71□□□□□ -1.02
PCF11-201ENST00000298281 CRIPTQ9P021 101 aa8.7□□□□□ -1.02
PCF11-201ENST00000298281 TLN2Q9Y4G6 2542 aa8.7□□□□□ -1.02
PCF11-201ENST00000298281 LINC00313P59037 77 aa8.7□□□□□ -1.02
PCF11-201ENST00000298281 YPEL4Q96NS1 127 aa8.7□□□□□ -1.02
PCF11-201ENST00000298281 TLN1Q9Y490 2541 aaKnown RBP8.7□□□□□ -1.02
PCF11-201ENST00000298281 NCOR2Q9Y618 2525 aa8.7□□□□□ -1.02
PCF11-201ENST00000298281 C8orf87E5RJ46 101 aa8.7□□□□□ -1.02
PCF11-201ENST00000298281 Q8N3U1 123 aa8.69□□□□□ -1.02
PCF11-201ENST00000298281 SMR3AQ99954 134 aa8.69□□□□□ -1.02
PCF11-201ENST00000298281 C16orf90A8MZG2 172 aa8.68□□□□□ -1.02
PCF11-201ENST00000298281 CRIP3Q6Q6R5 217 aa8.68□□□□□ -1.02
PCF11-201ENST00000298281 C2orf91Q6ZV80 131 aa8.66□□□□□ -1.02
PCF11-201ENST00000298281 Q96NJ1 140 aa8.65□□□□□ -1.02
PCF11-201ENST00000298281 PRR9Q5T870 116 aa8.65□□□□□ -1.02
PCF11-201ENST00000298281 COL27A1Q8IZC6 1860 aaPredicted RBP8.65□□□□□ -1.03
PCF11-201ENST00000298281 PCSK5Q92824 1860 aa8.65□□□□□ -1.03
PCF11-201ENST00000298281 IGIPA6NJ69 53 aa8.65□□□□□ -1.03
PCF11-201ENST00000298281 C11orf21Q9P2W6 132 aa8.64□□□□□ -1.03
PCF11-201ENST00000298281 A0A087WYN8 130 aa8.64□□□□□ -1.03
PCF11-201ENST00000298281 A0A087WVE0 104 aa8.64□□□□□ -1.03
PCF11-201ENST00000298281 CXCL6P80162 114 aa8.63□□□□□ -1.03
PCF11-201ENST00000298281 LINC00242Q5T6M2 205 aa8.63□□□□□ -1.03
PCF11-201ENST00000298281 USP9XQ93008 2570 aaPredicted RBP8.63□□□□□ -1.03
PCF11-201ENST00000298281 CHTF8P0CG12 524 aa8.63□□□□□ -1.03
PCF11-201ENST00000298281 NHLRC4P0CG21 123 aaPredicted RBP8.63□□□□□ -1.03
PCF11-201ENST00000298281 KIAA0087Q14695 138 aa8.62□□□□□ -1.03
PCF11-201ENST00000298281 Q6ZS46 218 aa8.62□□□□□ -1.03
PCF11-201ENST00000298281 ZNF580Q9UK33 172 aa8.62□□□□□ -1.03
PCF11-201ENST00000298281 SMCR5Q8TEV8 140 aa8.61□□□□□ -1.03
PCF11-201ENST00000298281 LINC01554Q52M75 96 aa8.61□□□□□ -1.03
PCF11-201ENST00000298281 GOLGB1Q14789 3259 aaKnown RBP8.61□□□□□ -1.03
PCF11-201ENST00000298281 IGLV1-51P01701 117 aa8.61□□□□□ -1.03
PCF11-201ENST00000298281 A8MTW9 85 aa8.61□□□□□ -1.03
PCF11-201ENST00000298281 SMIM1B2RUZ4 78 aa8.6□□□□□ -1.03
PCF11-201ENST00000298281 LUZP6Q538Z0 58 aa8.6□□□□□ -1.03
PCF11-201ENST00000298281 ODF3L2Q3SX64 289 aa8.6□□□□□ -1.03
PCF11-201ENST00000298281 TP53AIP1Q9HCN2 124 aa8.6□□□□□ -1.03
PCF11-201ENST00000298281 LINC01561Q8N1V8 128 aa8.59□□□□□ -1.03
PCF11-201ENST00000298281 SETD2Q9BYW2 2564 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 256.2 ms