RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 A0A087WVE0 104 aa7.22□□□□□ -1.25
COL6A3-201ENST00000295550 VPREB1P12018 145 aa7.22□□□□□ -1.25
COL6A3-201ENST00000295550 TRBV7-7A0A0K0K1E9 115 aa7.21□□□□□ -1.25
COL6A3-201ENST00000295550 PRORYQ9H606 182 aa7.21□□□□□ -1.25
COL6A3-201ENST00000295550 LOC107984640A0A0U1RRK4 108 aa7.21□□□□□ -1.26
COL6A3-201ENST00000295550 Q6YL49 198 aa7.21□□□□□ -1.26
COL6A3-201ENST00000295550 PSMG3-AS1Q96PY0 264 aa7.21□□□□□ -1.26
COL6A3-201ENST00000295550 PRO0628Q9UI54 55 aa7.21□□□□□ -1.26
COL6A3-201ENST00000295550 X6R8D5 127 aa7.21□□□□□ -1.26
COL6A3-201ENST00000295550 DEFB114Q30KQ6 69 aa7.2□□□□□ -1.26
COL6A3-201ENST00000295550 MAST4O15021 2626 aa7.2□□□□□ -1.26
COL6A3-201ENST00000295550 PLAC8L1A1L4L8 177 aa7.2□□□□□ -1.26
COL6A3-201ENST00000295550 IGLV1-40P01703 118 aa7.2□□□□□ -1.26
COL6A3-201ENST00000295550 TRBV6-4A0A1B0GX49 114 aa7.2□□□□□ -1.26
COL6A3-201ENST00000295550 ZNF843Q8N446 348 aa7.2□□□□□ -1.26
COL6A3-201ENST00000295550 GAS8-AS1O95177 125 aa7.2□□□□□ -1.26
COL6A3-201ENST00000295550 C1orf137Q5JT78 98 aa7.19□□□□□ -1.26
COL6A3-201ENST00000295550 CENPEQ02224 2701 aa7.19□□□□□ -1.26
COL6A3-201ENST00000295550 IGHV6-1A0A0B4J1U7 121 aa7.19□□□□□ -1.26
COL6A3-201ENST00000295550 C19orf84I3L1E1 186 aa7.19□□□□□ -1.26
COL6A3-201ENST00000295550 Q8N3U1 123 aa7.19□□□□□ -1.26
COL6A3-201ENST00000295550 Q8IZM0 81 aa7.19□□□□□ -1.26
COL6A3-201ENST00000295550 A0A087WYN8 130 aa7.19□□□□□ -1.26
COL6A3-201ENST00000295550 OXLD1Q5BKU9 147 aa7.19□□□□□ -1.26
COL6A3-201ENST00000295550 DNAH12Q6ZR08 3092 aa7.19□□□□□ -1.26
COL6A3-201ENST00000295550 H0Y9P7 68 aa7.18□□□□□ -1.26
COL6A3-201ENST00000295550 LINC00474Q9P2X8 69 aa7.18□□□□□ -1.26
COL6A3-201ENST00000295550 LINC01546A6NGU7 62 aa7.18□□□□□ -1.26
COL6A3-201ENST00000295550 LINC01547P58512 204 aaPredicted RBP7.18□□□□□ -1.26
COL6A3-201ENST00000295550 POLR2KP53803 58 aaKnown RBP7.18□□□□□ -1.26
COL6A3-201ENST00000295550 TMEM254Q8TBM7 123 aa7.18□□□□□ -1.26
COL6A3-201ENST00000295550 IGLV4-69A0A075B6H9 119 aa7.18□□□□□ -1.26
COL6A3-201ENST00000295550 RETNLBQ9BQ08 111 aa7.17□□□□□ -1.26
COL6A3-201ENST00000295550 RPL28P46779 137 aaKnown RBP7.17□□□□□ -1.26
COL6A3-201ENST00000295550 MUC7Q8TAX7 377 aa7.17□□□□□ -1.26
COL6A3-201ENST00000295550 LINC00959A0A1B0GUT2 108 aa7.17□□□□□ -1.26
COL6A3-201ENST00000295550 BBC3Q96PG8 261 aaPredicted RBP7.17□□□□□ -1.26
COL6A3-201ENST00000295550 CRIP2P52943 208 aaPredicted RBP7.16□□□□□ -1.26
COL6A3-201ENST00000295550 A0A096LNJ9 63 aa7.16□□□□□ -1.26
COL6A3-201ENST00000295550 SPINK1P00995 79 aa7.16□□□□□ -1.26
COL6A3-201ENST00000295550 PCOTHQ58A44 107 aa7.16□□□□□ -1.26
COL6A3-201ENST00000295550 KPRPQ5T749 579 aaPredicted RBP7.16□□□□□ -1.26
COL6A3-201ENST00000295550 LELP1Q5T871 98 aa7.16□□□□□ -1.26
COL6A3-201ENST00000295550 LIMD2Q9BT23 127 aa7.16□□□□□ -1.26
COL6A3-201ENST00000295550 IGIPA6NJ69 53 aa7.15□□□□□ -1.26
COL6A3-201ENST00000295550 MRGPRG-AS1Q2M3A8 158 aa7.15□□□□□ -1.26
COL6A3-201ENST00000295550 C9orf116Q5BN46 136 aaPredicted RBP7.15□□□□□ -1.27
COL6A3-201ENST00000295550 REG3GQ6UW15 175 aa7.15□□□□□ -1.27
COL6A3-201ENST00000295550 BRI3O95415 125 aa7.15□□□□□ -1.27
COL6A3-201ENST00000295550 TRBV10-3A0A0K0K1G6 114 aa7.15□□□□□ -1.27
COL6A3-201ENST00000295550 CIRBP-AS1Q8TBR5 109 aa7.14□□□□□ -1.27
COL6A3-201ENST00000295550 HCG22E2RYF7 251 aa7.14□□□□□ -1.27
COL6A3-201ENST00000295550 CYSRT1A8MQ03 144 aa7.14□□□□□ -1.27
COL6A3-201ENST00000295550 SBSPONQ8IVN8 264 aa7.13□□□□□ -1.27
COL6A3-201ENST00000295550 ZNF702PQ9H963 129 aa7.13□□□□□ -1.27
COL6A3-201ENST00000295550 TRAV10A0A0B4J240 114 aa7.13□□□□□ -1.27
COL6A3-201ENST00000295550 ZNF580Q9UK33 172 aa7.13□□□□□ -1.27
COL6A3-201ENST00000295550 SPAG11AQ6PDA7 123 aa7.13□□□□□ -1.27
COL6A3-201ENST00000295550 IGLV2-18A0A075B6J9 118 aa7.13□□□□□ -1.27
COL6A3-201ENST00000295550 PRR3P79522 188 aaKnown RBP7.12□□□□□ -1.27
COL6A3-201ENST00000295550 CXCL6P80162 114 aa7.12□□□□□ -1.27
COL6A3-201ENST00000295550 TSPEAR-AS2P59090 65 aa7.12□□□□□ -1.27
COL6A3-201ENST00000295550 C10orf99Q6UWK7 81 aa7.12□□□□□ -1.27
COL6A3-201ENST00000295550 ADAMTSL4-AS1Q5T5F5 129 aa7.11□□□□□ -1.27
COL6A3-201ENST00000295550 LINC00575Q6W349 94 aa7.11□□□□□ -1.27
COL6A3-201ENST00000295550 CDC42SE2Q9NRR3 84 aa7.11□□□□□ -1.27
COL6A3-201ENST00000295550 Q6ZSV7 163 aa7.11□□□□□ -1.27
COL6A3-201ENST00000295550 LINC00482Q8N8I6 264 aa7.11□□□□□ -1.27
COL6A3-201ENST00000295550 PRM2P04554 102 aa7.1□□□□□ -1.27
COL6A3-201ENST00000295550 Q9BRP9 147 aa7.1□□□□□ -1.27
COL6A3-201ENST00000295550 MGAM2Q2M2H8 2515 aa7.1□□□□□ -1.27
COL6A3-201ENST00000295550 C1orf64Q8NEQ6 169 aa7.09□□□□□ -1.27
COL6A3-201ENST00000295550 LINC00242Q5T6M2 205 aa7.09□□□□□ -1.27
COL6A3-201ENST00000295550 CDSNQ15517 529 aa7.09□□□□□ -1.27
COL6A3-201ENST00000295550 PLA2G1BP04054 148 aaKnown RBP7.09□□□□□ -1.27
COL6A3-201ENST00000295550 C4orf26Q17RF5 130 aa7.09□□□□□ -1.27
COL6A3-201ENST00000295550 hDV103S1A0JD37 113 aa7.09□□□□□ -1.27
COL6A3-201ENST00000295550 UNQ6190/PRO20217Q6UXQ8 127 aa7.09□□□□□ -1.27
COL6A3-201ENST00000295550 SMIM1B2RUZ4 78 aa7.09□□□□□ -1.28
COL6A3-201ENST00000295550 COX6A2Q02221 97 aa7.08□□□□□ -1.28
COL6A3-201ENST00000295550 M0R2N4 97 aa7.08□□□□□ -1.28
COL6A3-201ENST00000295550 EGFEM1PQ0D2K5 195 aa7.08□□□□□ -1.28
COL6A3-201ENST00000295550 Q9UF83 564 aa7.08□□□□□ -1.28
COL6A3-201ENST00000295550 CDIP1Q9H305 208 aa7.07□□□□□ -1.28
COL6A3-201ENST00000295550 AMELXQ99217 191 aa7.06□□□□□ -1.28
COL6A3-201ENST00000295550 LINC00846Q9NV44 126 aa7.06□□□□□ -1.28
COL6A3-201ENST00000295550 PRLHP81277 87 aa7.05□□□□□ -1.28
COL6A3-201ENST00000295550 DEFB116Q30KQ4 102 aa7.05□□□□□ -1.28
COL6A3-201ENST00000295550 C7orf65Q6ZTY9 151 aa7.05□□□□□ -1.28
COL6A3-201ENST00000295550 CHCHD7Q9BUK0 85 aa7.05□□□□□ -1.28
COL6A3-201ENST00000295550 A0A1B0GU69 56 aa7.04□□□□□ -1.28
COL6A3-201ENST00000295550 A0A087WSZ3 146 aa7.04□□□□□ -1.28
COL6A3-201ENST00000295550 SHISA2Q6UWI4 295 aa7.04□□□□□ -1.28
COL6A3-201ENST00000295550 IGKV2D-30A0A075B6S6 120 aa7.04□□□□□ -1.28
COL6A3-201ENST00000295550 IGKV2-30P06310 120 aa7.04□□□□□ -1.28
COL6A3-201ENST00000295550 C8orf87E5RJ46 101 aa7.03□□□□□ -1.28
COL6A3-201ENST00000295550 NBEAL1Q6ZS30 2694 aa7.03□□□□□ -1.28
COL6A3-201ENST00000295550 A8MTW9 85 aa7.02□□□□□ -1.29
COL6A3-201ENST00000295550 C18orf65Q6ZTR6 163 aa7.02□□□□□ -1.29
COL6A3-201ENST00000295550 EDN2P20800 178 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms