RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 C9orf116Q5BN46 136 aaPredicted RBP13.19□□□□□ -0.3
PCDH1-201ENST00000287008 LYPD5Q6UWN5 251 aa13.19□□□□□ -0.3
PCDH1-201ENST00000287008 WFDC10BQ8IUB3 73 aa13.19□□□□□ -0.3
PCDH1-201ENST00000287008 A0A1B0GUV1 79 aa13.19□□□□□ -0.3
PCDH1-201ENST00000287008 HRCT1Q6UXD1 115 aa13.19□□□□□ -0.3
PCDH1-201ENST00000287008 SDIM1Q6ZPB5 146 aa13.19□□□□□ -0.3
PCDH1-201ENST00000287008 LST1O00453 97 aa13.18□□□□□ -0.3
PCDH1-201ENST00000287008 ENHOQ6UWT2 76 aa13.16□□□□□ -0.3
PCDH1-201ENST00000287008 C2orf91Q6ZV80 131 aa13.16□□□□□ -0.3
PCDH1-201ENST00000287008 COX6A2Q02221 97 aa13.15□□□□□ -0.3
PCDH1-201ENST00000287008 Q6ZSN1 163 aa13.15□□□□□ -0.3
PCDH1-201ENST00000287008 TRBV10-3A0A0K0K1G6 114 aa13.14□□□□□ -0.31
PCDH1-201ENST00000287008 C20orf197Q8N268 126 aa13.14□□□□□ -0.31
PCDH1-201ENST00000287008 KRTAP24-1Q3LI83 254 aa13.13□□□□□ -0.31
PCDH1-201ENST00000287008 AMELXQ99217 191 aa13.13□□□□□ -0.31
PCDH1-201ENST00000287008 NDUFC2-KCTD14E9PQ53 114 aa13.13□□□□□ -0.31
PCDH1-201ENST00000287008 NDUFV3P56181 108 aaKnown RBP13.12□□□□□ -0.31
PCDH1-201ENST00000287008 URB1-AS1Q96HZ7 61 aa13.12□□□□□ -0.31
PCDH1-201ENST00000287008 C2orf48Q96LS8 159 aa13.11□□□□□ -0.31
PCDH1-201ENST00000287008 F8WDY8 70 aa13.11□□□□□ -0.31
PCDH1-201ENST00000287008 WFDC13Q8IUB5 93 aa13.11□□□□□ -0.31
PCDH1-201ENST00000287008 FSHBP01225 129 aa13.1□□□□□ -0.31
PCDH1-201ENST00000287008 REG3GQ6UW15 175 aa13.09□□□□□ -0.31
PCDH1-201ENST00000287008 C10orf25Q5T742 122 aa13.09□□□□□ -0.31
PCDH1-201ENST00000287008 LINC00310P59036 64 aa13.09□□□□□ -0.31
PCDH1-201ENST00000287008 NTM-AS1Q6ZSK4 140 aa13.07□□□□□ -0.32
PCDH1-201ENST00000287008 CELA1Q9UNI1 258 aa13.07□□□□□ -0.32
PCDH1-201ENST00000287008 LINC01556Q5JQF7 62 aa13.07□□□□□ -0.32
PCDH1-201ENST00000287008 C11orf72Q8NBR9 251 aa13.06□□□□□ -0.32
PCDH1-201ENST00000287008 PRR3P79522 188 aaKnown RBP13.05□□□□□ -0.32
PCDH1-201ENST00000287008 MT-ATP8P03928 68 aa13.05□□□□□ -0.32
PCDH1-201ENST00000287008 C1orf137Q5JT78 98 aa13.04□□□□□ -0.32
PCDH1-201ENST00000287008 CIRBP-AS1Q8TBR5 109 aa13.03□□□□□ -0.32
PCDH1-201ENST00000287008 HELZ2Q9BYK8 2649 aaKnown RBP13.03□□□□□ -0.32
PCDH1-201ENST00000287008 TSPEAR-AS2P59090 65 aa13.03□□□□□ -0.32
PCDH1-201ENST00000287008 FAM19A3Q7Z5A8 133 aa13.02□□□□□ -0.32
PCDH1-201ENST00000287008 KIF25-AS1Q9Y6Z4 181 aa13.02□□□□□ -0.32
PCDH1-201ENST00000287008 MRPL55Q7Z7F7 128 aaKnown RBP13.02□□□□□ -0.33
PCDH1-201ENST00000287008 LINC01561Q8N1V8 128 aa13.02□□□□□ -0.33
PCDH1-201ENST00000287008 C3orf22Q8N5N4 141 aa13.02□□□□□ -0.33
PCDH1-201ENST00000287008 J3KT08 172 aa13.01□□□□□ -0.33
PCDH1-201ENST00000287008 MDFIQ99750 246 aa13.01□□□□□ -0.33
PCDH1-201ENST00000287008 Q6ZRU5 148 aa13□□□□□ -0.33
PCDH1-201ENST00000287008 Q8N814 137 aa13□□□□□ -0.33
PCDH1-201ENST00000287008 A0A096LNJ9 63 aa13□□□□□ -0.33
PCDH1-201ENST00000287008 UQCRQO14949 82 aa13□□□□□ -0.33
PCDH1-201ENST00000287008 NDUFC2O95298 119 aa13□□□□□ -0.33
PCDH1-201ENST00000287008 COL4A2P08572 1712 aa12.99□□□□□ -0.33
PCDH1-201ENST00000287008 ADAMTSL4-AS1Q5T5F5 129 aa12.98□□□□□ -0.33
PCDH1-201ENST00000287008 ESRGQ1W209 222 aa12.97□□□□□ -0.33
PCDH1-201ENST00000287008 Q6JHZ5 121 aa12.97□□□□□ -0.33
PCDH1-201ENST00000287008 SBSPONQ8IVN8 264 aa12.97□□□□□ -0.33
PCDH1-201ENST00000287008 Q8N9L7 120 aa12.96□□□□□ -0.34
PCDH1-201ENST00000287008 PRYO14603 147 aa12.96□□□□□ -0.34
PCDH1-201ENST00000287008 IMUPQ9GZP8 106 aa12.94□□□□□ -0.34
PCDH1-201ENST00000287008 X6R8D5 127 aa12.93□□□□□ -0.34
PCDH1-201ENST00000287008 Q9BRP9 147 aa12.93□□□□□ -0.34
PCDH1-201ENST00000287008 IGHV3OR16-9A0A0B4J2B5 98 aa12.92□□□□□ -0.34
PCDH1-201ENST00000287008 H3BNG1 76 aa12.92□□□□□ -0.34
PCDH1-201ENST00000287008 PTPRBP23467 1997 aa12.91□□□□□ -0.34
PCDH1-201ENST00000287008 FAM19A4Q96LR4 140 aa12.91□□□□□ -0.34
PCDH1-201ENST00000287008 FAM236DA0A1B0GTK5 79 aa12.9□□□□□ -0.34
PCDH1-201ENST00000287008 FAM236CP0DP71 79 aa12.9□□□□□ -0.34
PCDH1-201ENST00000287008 LINC00315P59091 139 aa12.89□□□□□ -0.35
PCDH1-201ENST00000287008 CENPEQ02224 2701 aa12.89□□□□□ -0.35
PCDH1-201ENST00000287008 SERP2Q8N6R1 65 aa12.88□□□□□ -0.35
PCDH1-201ENST00000287008 A0A087WYN8 130 aa12.88□□□□□ -0.35
PCDH1-201ENST00000287008 C22orf24Q9Y442 160 aa12.88□□□□□ -0.35
PCDH1-201ENST00000287008 PRLHP81277 87 aa12.88□□□□□ -0.35
PCDH1-201ENST00000287008 BPTFQ12830 3046 aa12.87□□□□□ -0.35
PCDH1-201ENST00000287008 K7ERS5 55 aa12.87□□□□□ -0.35
PCDH1-201ENST00000287008 A0A087WSZ3 146 aa12.86□□□□□ -0.35
PCDH1-201ENST00000287008 NDUFC1O43677 76 aa12.86□□□□□ -0.35
PCDH1-201ENST00000287008 FLNAP21333 2647 aaKnown RBP12.85□□□□□ -0.35
PCDH1-201ENST00000287008 IGLV5-39A0A0G2JS06 123 aa12.84□□□□□ -0.35
PCDH1-201ENST00000287008 CFAP46Q8IYW2 2715 aa12.83□□□□□ -0.36
PCDH1-201ENST00000287008 IGHV6-1A0A0B4J1U7 121 aa12.83□□□□□ -0.36
PCDH1-201ENST00000287008 PRR4Q16378 134 aa12.82□□□□□ -0.36
PCDH1-201ENST00000287008 A8MTW9 85 aa12.82□□□□□ -0.36
PCDH1-201ENST00000287008 Q8NAQ8 132 aa12.82□□□□□ -0.36
PCDH1-201ENST00000287008 SNURFQ9Y675 71 aa12.82□□□□□ -0.36
PCDH1-201ENST00000287008 FAM240AA0A1B0GVK7 77 aa12.82□□□□□ -0.36
PCDH1-201ENST00000287008 LINC00575Q6W349 94 aa12.82□□□□□ -0.36
PCDH1-201ENST00000287008 LINC00337Q8N6G1 96 aa12.81□□□□□ -0.36
PCDH1-201ENST00000287008 SMCR5Q8TEV8 140 aa12.81□□□□□ -0.36
PCDH1-201ENST00000287008 ITPR3Q14573 2671 aa12.81□□□□□ -0.36
PCDH1-201ENST00000287008 SETXQ7Z333 2677 aaKnown RBP12.8□□□□□ -0.36
PCDH1-201ENST00000287008 Q6ZVQ6 151 aa12.8□□□□□ -0.36
PCDH1-201ENST00000287008 WWC2-AS2Q96NR7 200 aa12.79□□□□□ -0.36
PCDH1-201ENST00000287008 SERP1Q9Y6X1 66 aa12.79□□□□□ -0.36
PCDH1-201ENST00000287008 FAM30AQ9NZY2 134 aa12.79□□□□□ -0.36
PCDH1-201ENST00000287008 MPLKIPQ8TAP9 179 aa12.79□□□□□ -0.36
PCDH1-201ENST00000287008 NBDYA0A0U1RRE5 68 aa12.78□□□□□ -0.36
PCDH1-201ENST00000287008 COL27A1Q8IZC6 1860 aaPredicted RBP12.78□□□□□ -0.36
PCDH1-201ENST00000287008 PRR15LQ9BU68 103 aa12.78□□□□□ -0.36
PCDH1-201ENST00000287008 LINC01547P58512 204 aaPredicted RBP12.77□□□□□ -0.36
PCDH1-201ENST00000287008 LIMD2Q9BT23 127 aa12.77□□□□□ -0.36
PCDH1-201ENST00000287008 KLK9Q2XQG4 91 aa12.77□□□□□ -0.37
PCDH1-201ENST00000287008 Q9UF83 564 aa12.77□□□□□ -0.37
PCDH1-201ENST00000287008 XGP55808 180 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms