RNA–Protein interactions for RNA: ENST00000284771.6

PDLIM3-203, Transcript of PDZ and LIM domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM3, Length 1,672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-203ENST00000284771 CAMK2N2Q96S95 79 aa14.17□□□□□ -0.14
PDLIM3-203ENST00000284771 KRTAP10-2P60368 255 aa14.16□□□□□ -0.14
PDLIM3-203ENST00000284771 ZNF625Q96I27 306 aaPredicted RBP14.16□□□□□ -0.14
PDLIM3-203ENST00000284771 PAM16Q9Y3D7 125 aa14.16□□□□□ -0.14
PDLIM3-203ENST00000284771 HSBP1L1C9JCN9 74 aa14.15□□□□□ -0.14
PDLIM3-203ENST00000284771 CKS1BP61024 79 aa14.15□□□□□ -0.14
PDLIM3-203ENST00000284771 CNBPP62633 177 aaKnown RBP14.15□□□□□ -0.14
PDLIM3-203ENST00000284771 HECTD4Q9Y4D8 3996 aa14.15□□□□□ -0.14
PDLIM3-203ENST00000284771 NMUP48645 174 aa14.14□□□□□ -0.15
PDLIM3-203ENST00000284771 SYCNQ0VAF6 134 aa14.14□□□□□ -0.15
PDLIM3-203ENST00000284771 PCP2Q8IVA1 136 aa14.14□□□□□ -0.15
PDLIM3-203ENST00000284771 VAMP8Q9BV40 100 aa14.14□□□□□ -0.15
PDLIM3-203ENST00000284771 NDUFA12Q9UI09 145 aa14.14□□□□□ -0.15
PDLIM3-203ENST00000284771 DNAH5Q8TE73 4624 aa14.13□□□□□ -0.15
PDLIM3-203ENST00000284771 NDUFA1O15239 70 aa14.13□□□□□ -0.15
PDLIM3-203ENST00000284771 C6orf48Q9UBA6 75 aa14.13□□□□□ -0.15
PDLIM3-203ENST00000284771 A0A1B0GVY2 172 aa14.12□□□□□ -0.15
PDLIM3-203ENST00000284771 EREGO14944 169 aa14.12□□□□□ -0.15
PDLIM3-203ENST00000284771 LGALS3P17931 250 aaKnown RBP14.12□□□□□ -0.15
PDLIM3-203ENST00000284771 CXCL5P42830 114 aa14.12□□□□□ -0.15
PDLIM3-203ENST00000284771 C9orf116Q5BN46 136 aaPredicted RBP14.12□□□□□ -0.15
PDLIM3-203ENST00000284771 SMIM6P0DI80 62 aa14.11□□□□□ -0.15
PDLIM3-203ENST00000284771 SPATA45Q537H7 98 aa14.11□□□□□ -0.15
PDLIM3-203ENST00000284771 F8WDY8 70 aa14.1□□□□□ -0.15
PDLIM3-203ENST00000284771 LINC01620Q4KN68 170 aa14.1□□□□□ -0.15
PDLIM3-203ENST00000284771 CARD19Q96LW7 228 aa14.1□□□□□ -0.15
PDLIM3-203ENST00000284771 TP73-AS1Q9UF72 201 aa14.09□□□□□ -0.15
PDLIM3-203ENST00000284771 C9orf163Q8N9P6 203 aa14.08□□□□□ -0.16
PDLIM3-203ENST00000284771 PKHD1P08F94 4074 aa14.07□□□□□ -0.16
PDLIM3-203ENST00000284771 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.07□□□□□ -0.16
PDLIM3-203ENST00000284771 TRBV30A0A0K0K1B3 111 aa14.07□□□□□ -0.16
PDLIM3-203ENST00000284771 MYMXA0A1B0GTQ4 84 aa14.07□□□□□ -0.16
PDLIM3-203ENST00000284771 ZNF815PA8K554 130 aa14.06□□□□□ -0.16
PDLIM3-203ENST00000284771 C14orf144Q96I85 54 aa14.06□□□□□ -0.16
PDLIM3-203ENST00000284771 IGLV5-52A0A0A0MRZ9 124 aa14.05□□□□□ -0.16
PDLIM3-203ENST00000284771 RNF151Q2KHN1 245 aa14.04□□□□□ -0.16
PDLIM3-203ENST00000284771 PGPEP1Q9NXJ5 209 aa14.04□□□□□ -0.16
PDLIM3-203ENST00000284771 A0A0J9YXY3 114 aa14.04□□□□□ -0.16
PDLIM3-203ENST00000284771 COX8AP10176 69 aa14.04□□□□□ -0.16
PDLIM3-203ENST00000284771 S100A12P80511 92 aa14.04□□□□□ -0.16
PDLIM3-203ENST00000284771 SFTA2Q6UW10 78 aa14.04□□□□□ -0.16
PDLIM3-203ENST00000284771 HERV-K104P63124 156 aa14.03□□□□□ -0.16
PDLIM3-203ENST00000284771 BOD1L2Q8IYS8 172 aa14.03□□□□□ -0.16
PDLIM3-203ENST00000284771 C12orf57Q99622 126 aa14.02□□□□□ -0.16
PDLIM3-203ENST00000284771 ERG28Q9UKR5 140 aa14.02□□□□□ -0.16
PDLIM3-203ENST00000284771 PFN2P35080 140 aa14.01□□□□□ -0.17
PDLIM3-203ENST00000284771 SDIM1Q6ZPB5 146 aa14.01□□□□□ -0.17
PDLIM3-203ENST00000284771 A0A0U1RRA0 63 aa14.01□□□□□ -0.17
PDLIM3-203ENST00000284771 Q6ZRP5 223 aa14□□□□□ -0.17
PDLIM3-203ENST00000284771 LINC00518Q8N0U6 118 aa14□□□□□ -0.17
PDLIM3-203ENST00000284771 SMIM13P0DJ93 91 aa13.99□□□□□ -0.17
PDLIM3-203ENST00000284771 TLX1NBP0CAT3 122 aa13.98□□□□□ -0.17
PDLIM3-203ENST00000284771 MEIG1Q5JSS6 88 aa13.98□□□□□ -0.17
PDLIM3-203ENST00000284771 LITAFQ99732 161 aa13.98□□□□□ -0.17
PDLIM3-203ENST00000284771 NDUFC2-KCTD14E9PQ53 114 aa13.98□□□□□ -0.17
PDLIM3-203ENST00000284771 ADAMTSL4-AS1Q5T5F5 129 aa13.98□□□□□ -0.17
PDLIM3-203ENST00000284771 DLEU1O43261 78 aa13.97□□□□□ -0.17
PDLIM3-203ENST00000284771 COX17Q14061 63 aa13.97□□□□□ -0.17
PDLIM3-203ENST00000284771 SCGB1D4Q6XE38 83 aa13.96□□□□□ -0.17
PDLIM3-203ENST00000284771 GCSHP23434 173 aa13.95□□□□□ -0.18
PDLIM3-203ENST00000284771 LINC00158P58513 81 aa13.95□□□□□ -0.18
PDLIM3-203ENST00000284771 DAND5Q8N907 189 aa13.95□□□□□ -0.18
PDLIM3-203ENST00000284771 A0A096LNI7 61 aa13.95□□□□□ -0.18
PDLIM3-203ENST00000284771 LOC107984640A0A0U1RRK4 108 aa13.95□□□□□ -0.18
PDLIM3-203ENST00000284771 KRTAP10-1P60331 282 aa13.95□□□□□ -0.18
PDLIM3-203ENST00000284771 RPL18AQ02543 176 aaKnown RBP13.95□□□□□ -0.18
PDLIM3-203ENST00000284771 SLC25A34Q6PIV7 304 aa13.95□□□□□ -0.18
PDLIM3-203ENST00000284771 LRP1BQ9NZR2 4599 aa13.94□□□□□ -0.18
PDLIM3-203ENST00000284771 DYNC1H1Q14204 4646 aaKnown RBP13.94□□□□□ -0.18
PDLIM3-203ENST00000284771 PANO1I0J062 215 aa13.94□□□□□ -0.18
PDLIM3-203ENST00000284771 GAGE2EQ4V326 116 aa13.94□□□□□ -0.18
PDLIM3-203ENST00000284771 PRO1933Q9H354 126 aa13.94□□□□□ -0.18
PDLIM3-203ENST00000284771 GAGE2DQ9UEU5 116 aa13.94□□□□□ -0.18
PDLIM3-203ENST00000284771 EPPK1P58107 5090 aaKnown RBP13.94□□□□□ -0.18
PDLIM3-203ENST00000284771 CHTF8P0CG12 524 aa13.93□□□□□ -0.18
PDLIM3-203ENST00000284771 GAGE2BQ13066 116 aa13.93□□□□□ -0.18
PDLIM3-203ENST00000284771 LINC00587B1AMM8 73 aa13.92□□□□□ -0.18
PDLIM3-203ENST00000284771 MIR7-3HGQ8N6C7 128 aa13.92□□□□□ -0.18
PDLIM3-203ENST00000284771 C16orf90A8MZG2 172 aa13.91□□□□□ -0.18
PDLIM3-203ENST00000284771 PTTG1IPP53801 180 aa13.91□□□□□ -0.18
PDLIM3-203ENST00000284771 XAGE1AQ9HD64 81 aa13.91□□□□□ -0.18
PDLIM3-203ENST00000284771 IGKV2-24A0A0C4DH68 120 aa13.91□□□□□ -0.18
PDLIM3-203ENST00000284771 EIF4EBP3O60516 100 aaPredicted RBP13.91□□□□□ -0.18
PDLIM3-203ENST00000284771 TIMM17BO60830 172 aa13.91□□□□□ -0.18
PDLIM3-203ENST00000284771 C2orf91Q6ZV80 131 aa13.91□□□□□ -0.18
PDLIM3-203ENST00000284771 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.91□□□□□ -0.18
PDLIM3-203ENST00000284771 CIRBPQ14011 172 aaKnown RBP13.9□□□□□ -0.18
PDLIM3-203ENST00000284771 C9orf129Q5T035 196 aaKnown RBP13.9□□□□□ -0.18
PDLIM3-203ENST00000284771 SND1-IT1Q9HBX3 110 aa13.9□□□□□ -0.18
PDLIM3-203ENST00000284771 FAM30AQ9NZY2 134 aa13.9□□□□□ -0.18
PDLIM3-203ENST00000284771 DNAH8Q96JB1 4490 aa13.9□□□□□ -0.19
PDLIM3-203ENST00000284771 UQCR10Q9UDW1 63 aa13.88□□□□□ -0.19
PDLIM3-203ENST00000284771 SOSTDC1Q6X4U4 206 aa13.87□□□□□ -0.19
PDLIM3-203ENST00000284771 NPC2P61916 151 aa13.86□□□□□ -0.19
PDLIM3-203ENST00000284771 TMEM238C9JI98 176 aa13.85□□□□□ -0.19
PDLIM3-203ENST00000284771 SPACA4Q8TDM5 124 aa13.85□□□□□ -0.19
PDLIM3-203ENST00000284771 SPANXDQ9BXN6 97 aa13.85□□□□□ -0.19
PDLIM3-203ENST00000284771 SPANXCQ9NY87 97 aa13.85□□□□□ -0.19
PDLIM3-203ENST00000284771 HIGD1BQ9P298 99 aa13.85□□□□□ -0.19
PDLIM3-203ENST00000284771 FAM168BA1KXE4 195 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms