RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CEMP1Q6PRD7 247 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-220ENST00000641603 LINC00269Q8N2A0 174 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 TNCP24821 2201 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 FAM19A1Q7Z5A9 133 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 FAM208BQ5VWN6 2430 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 ROS1P08922 2347 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 A0A087WYN8 130 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 TNFRSF13BO14836 293 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-220ENST00000641603 C7orf65Q6ZTY9 151 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 PSPHP1O15172 72 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 UBE2DNLQ8IWF7 75 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 KIAA1549Q9HCM3 1950 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 ZFP36P26651 326 aaKnown RBP3.38□□□□□ -1.87
SCN1A-220ENST00000641603 C9orf66Q5T8R8 295 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 FAM19A4Q96LR4 140 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 IGKV2D-24A0A075B6R9 120 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 IGHV4-59P01825 116 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 UNQ9165/PRO28630Q6UXU0 137 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 LINC00959A0A1B0GUT2 108 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 LCA10Q71F78 164 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 IL17DQ8TAD2 202 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 COL5A1P20908 1838 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-220ENST00000641603 C1orf229Q6ZS94 237 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-220ENST00000641603 C6orf223Q8N319 242 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 C10orf25Q5T742 122 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 SEM1Q6ZVN7 128 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 C11orf72Q8NBR9 251 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 C10orf142B7Z368 130 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 RUSC1-AS1Q66K80 236 aa3.38□□□□□ -1.87
SCN1A-220ENST00000641603 C1orf137Q5JT78 98 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 TMEM105Q8N8V8 129 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 SCXQ7RTU7 201 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 C2orf48Q96LS8 159 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 KIF25-AS1Q9Y6Z4 181 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 NCOA6Q14686 2063 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-220ENST00000641603 FHL2Q14192 279 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 PRR9Q5T870 116 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 C1orf158Q8N1D5 194 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 LINC00337Q8N6G1 96 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 KLK9Q2XQG4 91 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 MUC22E2RYF6 1773 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-220ENST00000641603 TET2Q6N021 2002 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-220ENST00000641603 Q6ZQT0 140 aa3.37□□□□□ -1.87
SCN1A-220ENST00000641603 IGLV1-40P01703 118 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 LINC00474Q9P2X8 69 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 GAS8-AS1O95177 125 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 LELP1Q5T871 98 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 CLPSL2Q6UWE3 100 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 WFDC10BQ8IUB3 73 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 NAV3Q8IVL0 2385 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 PCDH15Q96QU1 1955 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 C3orf84H3BNL1 204 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 ACACBO00763 2458 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 PLA2G2CQ5R387 149 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 H0Y9P7 68 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 H7BZZ5 65 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 SYCNQ0VAF6 134 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 Q6ZTI0 123 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 LINC00336Q6ZUF6 198 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 IGLV10-54A0A075B6I4 117 aa3.36□□□□□ -1.87
SCN1A-220ENST00000641603 MSMPQ1L6U9 139 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 Q1T7F1 81 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 C22orf34Q6ZV56 151 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 SPANXA2-OT1Q8N9U9 137 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 LY6G6DO95868 133 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 MALRD1Q5VYJ5 2156 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 PTPRSQ13332 1948 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 FHL3Q13643 280 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 LITAFQ99732 161 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 KLK12Q9UKR0 248 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 CPAMD8Q8IZJ3 1885 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 PCNX3Q9H6A9 2034 aa3.35□□□□□ -1.87
SCN1A-220ENST00000641603 IGHV4-38-2P0DP08 117 aa3.34□□□□□ -1.87
SCN1A-220ENST00000641603 Q6ZSV7 163 aa3.34□□□□□ -1.87
SCN1A-220ENST00000641603 KPRPQ5T749 579 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-220ENST00000641603 CCDC168Q8NDH2 2452 aa3.34□□□□□ -1.88
SCN1A-220ENST00000641603 SPAG11AQ6PDA7 123 aa3.34□□□□□ -1.88
SCN1A-220ENST00000641603 LINC00315P59091 139 aa3.34□□□□□ -1.88
SCN1A-220ENST00000641603 WFDC13Q8IUB5 93 aa3.33□□□□□ -1.88
SCN1A-220ENST00000641603 PRR14LQ5THK1 2151 aa3.33□□□□□ -1.88
SCN1A-220ENST00000641603 SPATA3Q8NHX4 192 aa3.33□□□□□ -1.88
SCN1A-220ENST00000641603 LOC101927531A0A1B0GV80 90 aa3.33□□□□□ -1.88
SCN1A-220ENST00000641603 SLURP1P55000 103 aa3.33□□□□□ -1.88
SCN1A-220ENST00000641603 C1orf64Q8NEQ6 169 aa3.33□□□□□ -1.88
SCN1A-220ENST00000641603 ZFYVE26Q68DK2 2539 aa3.33□□□□□ -1.88
SCN1A-220ENST00000641603 SONP18583 2426 aaKnown RBP3.33□□□□□ -1.88
SCN1A-220ENST00000641603 PRB2P02812 416 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-220ENST00000641603 LY6HO94772 140 aa3.33□□□□□ -1.88
SCN1A-220ENST00000641603 MYO9AB2RTY4 2548 aa3.33□□□□□ -1.88
SCN1A-220ENST00000641603 IGHV4-31P0DP07 118 aa3.33□□□□□ -1.88
SCN1A-220ENST00000641603 ACYP2P14621 99 aa3.32□□□□□ -1.88
SCN1A-220ENST00000641603 NANOS2P60321 138 aaKnown RBP3.32□□□□□ -1.88
SCN1A-220ENST00000641603 MYO18BQ8IUG5 2567 aa3.32□□□□□ -1.88
SCN1A-220ENST00000641603 ZNF843Q8N446 348 aa3.32□□□□□ -1.88
SCN1A-220ENST00000641603 LINC00167Q96N53 147 aa3.32□□□□□ -1.88
SCN1A-220ENST00000641603 IGHV3OR16-9A0A0B4J2B5 98 aa3.32□□□□□ -1.88
SCN1A-220ENST00000641603 LTBP2Q14767 1821 aa3.32□□□□□ -1.88
SCN1A-220ENST00000641603 MOBPQ13875 183 aa3.32□□□□□ -1.88
SCN1A-220ENST00000641603 LINC01548A6NM66 108 aa3.32□□□□□ -1.88
SCN1A-220ENST00000641603 LMO4P61968 165 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms