RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 LINC00574Q9H8X3 128 aa4.52□□□□□ -1.69
SCN1A-217ENST00000637988 A0A0J9YXY3 114 aa4.51□□□□□ -1.69
SCN1A-217ENST00000637988 C2CD3Q4AC94 2353 aa4.51□□□□□ -1.69
SCN1A-217ENST00000637988 EBI3Q14213 229 aa4.51□□□□□ -1.69
SCN1A-217ENST00000637988 WFDC10AQ9H1F0 79 aa4.51□□□□□ -1.69
SCN1A-217ENST00000637988 PATE2Q6UY27 113 aa4.51□□□□□ -1.69
SCN1A-217ENST00000637988 F8P00451 2351 aa4.51□□□□□ -1.69
SCN1A-217ENST00000637988 C20orf173Q96LM9 149 aa4.51□□□□□ -1.69
SCN1A-217ENST00000637988 PLA2G2EQ9NZK7 142 aa4.51□□□□□ -1.69
SCN1A-217ENST00000637988 BRI3O95415 125 aa4.5□□□□□ -1.69
SCN1A-217ENST00000637988 J3KT08 172 aa4.5□□□□□ -1.69
SCN1A-217ENST00000637988 PIEZO2Q9H5I5 2752 aa4.5□□□□□ -1.69
SCN1A-217ENST00000637988 IGLV2-14P01704 120 aa4.5□□□□□ -1.69
SCN1A-217ENST00000637988 ZNF73O43830 326 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-217ENST00000637988 LINC00959A0A1B0GUT2 108 aa4.5□□□□□ -1.69
SCN1A-217ENST00000637988 C6orf99Q4VX62 202 aa4.5□□□□□ -1.69
SCN1A-217ENST00000637988 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-217ENST00000637988 TRBV6-5A0A0K0K1A5 114 aa4.5□□□□□ -1.69
SCN1A-217ENST00000637988 IGHV6-1A0A0B4J1U7 121 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 WFDC13Q8IUB5 93 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 MDFIQ99750 246 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 Q6ZTC4 211 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 Q8IZM0 81 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 M0QY20 66 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 GDF5OSQ5U4N7 250 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 C18orf65Q6ZTR6 163 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 A6NED7 52 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 LINC00643Q86TS7 51 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 C6orf223Q8N319 242 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 CDKN2A-AS1Q9UH64 79 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 EGFEM1PQ0D2K5 195 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 FHL3Q13643 280 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 FAM19A3Q7Z5A8 133 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 ZNF524Q96C55 264 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 WWC2-AS2Q96NR7 200 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 PRO3102Q9H379 93 aa4.49□□□□□ -1.69
SCN1A-217ENST00000637988 IGLV4-3A0A075B6K6 122 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 USP9XQ93008 2570 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-217ENST00000637988 IGLV1-51P01701 117 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 IGLV1-40P01703 118 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 MRPS36P82909 103 aaKnown RBP4.48□□□□□ -1.69
SCN1A-217ENST00000637988 C10orf99Q6UWK7 81 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 SCXQ7RTU7 201 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 LINC00308Q8TCZ7 52 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 ENHOQ6UWT2 76 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 POM121L12Q8N7R1 296 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 PYGO1Q9Y3Y4 419 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 TIMM17BO60830 172 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 MPLKIPQ8TAP9 179 aa4.48□□□□□ -1.69
SCN1A-217ENST00000637988 COX6B2Q6YFQ2 88 aa4.47□□□□□ -1.69
SCN1A-217ENST00000637988 CYSRT1A8MQ03 144 aa4.47□□□□□ -1.69
SCN1A-217ENST00000637988 Q9BRP9 147 aa4.47□□□□□ -1.69
SCN1A-217ENST00000637988 ZFAND3Q9H8U3 227 aa4.47□□□□□ -1.69
SCN1A-217ENST00000637988 C20orf197Q8N268 126 aa4.47□□□□□ -1.69
SCN1A-217ENST00000637988 NDUFC2-KCTD14E9PQ53 114 aa4.47□□□□□ -1.69
SCN1A-217ENST00000637988 NDUFV3P56181 108 aaKnown RBP4.47□□□□□ -1.69
SCN1A-217ENST00000637988 LINC00526Q96FQ7 95 aa4.47□□□□□ -1.69
SCN1A-217ENST00000637988 COL4A3Q01955 1670 aa4.46□□□□□ -1.69
SCN1A-217ENST00000637988 TRBV7-6A0A0J9YX20 115 aa4.46□□□□□ -1.7
SCN1A-217ENST00000637988 hDV103S1A0JD37 113 aa4.46□□□□□ -1.7
SCN1A-217ENST00000637988 ABCA12Q86UK0 2595 aa4.46□□□□□ -1.7
SCN1A-217ENST00000637988 B5MCH6 92 aa4.46□□□□□ -1.7
SCN1A-217ENST00000637988 RETNLBQ9BQ08 111 aa4.46□□□□□ -1.7
SCN1A-217ENST00000637988 JMJD1CQ15652 2540 aa4.46□□□□□ -1.7
SCN1A-217ENST00000637988 ACANP16112 2415 aa4.46□□□□□ -1.7
SCN1A-217ENST00000637988 FAM240AA0A1B0GVK7 77 aa4.46□□□□□ -1.7
SCN1A-217ENST00000637988 ZNF462Q96JM2 2506 aa4.46□□□□□ -1.7
SCN1A-217ENST00000637988 LOC105371267A0A1B0GV96 52 aa4.45□□□□□ -1.7
SCN1A-217ENST00000637988 Q6ZQY7 126 aa4.45□□□□□ -1.7
SCN1A-217ENST00000637988 MUC22E2RYF6 1773 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-217ENST00000637988 TLN1Q9Y490 2541 aaKnown RBP4.45□□□□□ -1.7
SCN1A-217ENST00000637988 SDIM1Q6ZPB5 146 aa4.45□□□□□ -1.7
SCN1A-217ENST00000637988 Q8N2B8 174 aa4.45□□□□□ -1.7
SCN1A-217ENST00000637988 ADCYAP1P18509 176 aa4.45□□□□□ -1.7
SCN1A-217ENST00000637988 IGF2RP11717 2491 aa4.45□□□□□ -1.7
SCN1A-217ENST00000637988 COX6A2Q02221 97 aa4.45□□□□□ -1.7
SCN1A-217ENST00000637988 TLN2Q9Y4G6 2542 aa4.45□□□□□ -1.7
SCN1A-217ENST00000637988 MSMPQ1L6U9 139 aa4.45□□□□□ -1.7
SCN1A-217ENST00000637988 TRBV27A0A0K0K1C4 114 aa4.44□□□□□ -1.7
SCN1A-217ENST00000637988 PROK1P58294 105 aa4.44□□□□□ -1.7
SCN1A-217ENST00000637988 TYMSOSQ8TAI1 123 aa4.44□□□□□ -1.7
SCN1A-217ENST00000637988 ATP11AUNQ6ZP68 121 aa4.44□□□□□ -1.7
SCN1A-217ENST00000637988 NUPR1O60356 82 aa4.44□□□□□ -1.7
SCN1A-217ENST00000637988 C7orf65Q6ZTY9 151 aa4.44□□□□□ -1.7
SCN1A-217ENST00000637988 FAM30AQ9NZY2 134 aa4.44□□□□□ -1.7
SCN1A-217ENST00000637988 ZNF80P51504 273 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-217ENST00000637988 FXYD2P54710 66 aa4.44□□□□□ -1.7
SCN1A-217ENST00000637988 C10orf91Q5T1B1 145 aa4.43□□□□□ -1.7
SCN1A-217ENST00000637988 KRTAP10-9P60411 292 aa4.43□□□□□ -1.7
SCN1A-217ENST00000637988 SPACA4Q8TDM5 124 aa4.43□□□□□ -1.7
SCN1A-217ENST00000637988 KLLNB2CW77 178 aa4.43□□□□□ -1.7
SCN1A-217ENST00000637988 SPINK1P00995 79 aa4.43□□□□□ -1.7
SCN1A-217ENST00000637988 WDR87Q6ZQQ6 2873 aa4.43□□□□□ -1.7
SCN1A-217ENST00000637988 PCSK5Q92824 1860 aa4.43□□□□□ -1.7
SCN1A-217ENST00000637988 ZNF22P17026 224 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-217ENST00000637988 RPL37AP61513 92 aaKnown RBP4.42□□□□□ -1.7
SCN1A-217ENST00000637988 LYPD5Q6UWN5 251 aa4.42□□□□□ -1.7
SCN1A-217ENST00000637988 Q6ZRP5 223 aa4.42□□□□□ -1.7
SCN1A-217ENST00000637988 Q8N6K4 173 aa4.42□□□□□ -1.7
SCN1A-217ENST00000637988 CDC42SE2Q9NRR3 84 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms