RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TMEM141Q96I45 108 aa12.4□□□□□ -0.42
CLN3-260ENST00000637578 GAGE12HA6NDE8 117 aa12.39□□□□□ -0.43
CLN3-260ENST00000637578 SDIM1Q6ZPB5 146 aa12.39□□□□□ -0.43
CLN3-260ENST00000637578 CHCHD1Q96BP2 118 aaKnown RBP12.39□□□□□ -0.43
CLN3-260ENST00000637578 SCGB3A1Q96QR1 104 aa12.39□□□□□ -0.43
CLN3-260ENST00000637578 TIMM17AQ99595 171 aa12.39□□□□□ -0.43
CLN3-260ENST00000637578 hDV102S1A0JD36 115 aa12.39□□□□□ -0.43
CLN3-260ENST00000637578 HBDP02042 147 aa12.39□□□□□ -0.43
CLN3-260ENST00000637578 SLPIP03973 132 aa12.39□□□□□ -0.43
CLN3-260ENST00000637578 SS18Q15532 418 aa12.39□□□□□ -0.43
CLN3-260ENST00000637578 ERASQ7Z444 233 aa12.39□□□□□ -0.43
CLN3-260ENST00000637578 LINC01549A6NIU2 74 aa12.38□□□□□ -0.43
CLN3-260ENST00000637578 IFITM10A6NMD0 228 aa12.38□□□□□ -0.43
CLN3-260ENST00000637578 CCL25O15444 150 aa12.38□□□□□ -0.43
CLN3-260ENST00000637578 PLA2G1BP04054 148 aaKnown RBP12.38□□□□□ -0.43
CLN3-260ENST00000637578 NPSP0C0P6 89 aa12.38□□□□□ -0.43
CLN3-260ENST00000637578 XCL1P47992 114 aa12.38□□□□□ -0.43
CLN3-260ENST00000637578 HIST1H2BKO60814 126 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 SERF1AO75920 110 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 HIST1H2BJP06899 126 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 HIST1H2BOP23527 126 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 HIST1H2BBP33778 126 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 HIST1H2BDP58876 126 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 LINC00310P59036 64 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 HIST1H2BCP62807 126 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 HIST2H2BEQ16778 126 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.37□□□□□ -0.43
CLN3-260ENST00000637578 ZC2HC1BQ5TFG8 222 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 Q6ZN92 141 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 LINC00173Q6ZV60 143 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 C15orf56Q8N910 161 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 HIST1H2BHQ93079 126 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 HIST1H2BNQ99877 126 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 HIST1H2BMQ99879 126 aa12.37□□□□□ -0.43
CLN3-260ENST00000637578 C1orf196B1AJZ1 125 aa12.36□□□□□ -0.43
CLN3-260ENST00000637578 TEX43Q6ZNM6 134 aa12.36□□□□□ -0.43
CLN3-260ENST00000637578 AMELXQ99217 191 aa12.36□□□□□ -0.43
CLN3-260ENST00000637578 FOXI1Q12951 378 aa12.35□□□□□ -0.43
CLN3-260ENST00000637578 CFAP161Q6P656 301 aa12.35□□□□□ -0.43
CLN3-260ENST00000637578 VCX2Q9H322 139 aa12.35□□□□□ -0.43
CLN3-260ENST00000637578 FLG2Q5D862 2391 aaPredicted RBP12.35□□□□□ -0.43
CLN3-260ENST00000637578 HSBP1O75506 76 aa12.35□□□□□ -0.43
CLN3-260ENST00000637578 KRTAP10-4P60372 401 aaPredicted RBP12.35□□□□□ -0.43
CLN3-260ENST00000637578 PAPPA-AS1Q5QFB9 102 aa12.35□□□□□ -0.43
CLN3-260ENST00000637578 MYCBP2O75592 4640 aa12.34□□□□□ -0.43
CLN3-260ENST00000637578 PDZD11Q5EBL8 140 aa12.34□□□□□ -0.43
CLN3-260ENST00000637578 CD164L2Q6UWJ8 174 aa12.34□□□□□ -0.43
CLN3-260ENST00000637578 C2orf88Q9BSF0 95 aa12.34□□□□□ -0.43
CLN3-260ENST00000637578 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.34□□□□□ -0.43
CLN3-260ENST00000637578 NUPR1O60356 82 aa12.33□□□□□ -0.44
CLN3-260ENST00000637578 CIRBPQ14011 172 aaKnown RBP12.33□□□□□ -0.44
CLN3-260ENST00000637578 FAM19A2Q8N3H0 131 aa12.33□□□□□ -0.44
CLN3-260ENST00000637578 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.32□□□□□ -0.44
CLN3-260ENST00000637578 PANO1I0J062 215 aa12.32□□□□□ -0.44
CLN3-260ENST00000637578 UBE2D1P51668 147 aa12.32□□□□□ -0.44
CLN3-260ENST00000637578 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.31□□□□□ -0.44
CLN3-260ENST00000637578 IGHV3-64A0A075B6Q5 118 aa12.3□□□□□ -0.44
CLN3-260ENST00000637578 GVQW2A0A096LPI5 108 aaPredicted RBP12.3□□□□□ -0.44
CLN3-260ENST00000637578 LINC00242Q5T6M2 205 aa12.3□□□□□ -0.44
CLN3-260ENST00000637578 ATP5LO75964 103 aa12.29□□□□□ -0.44
CLN3-260ENST00000637578 CST9LQ9H4G1 147 aa12.29□□□□□ -0.44
CLN3-260ENST00000637578 COX7A2LO14548 114 aa12.28□□□□□ -0.44
CLN3-260ENST00000637578 HIGD2BQ4VC39 106 aa12.28□□□□□ -0.44
CLN3-260ENST00000637578 HERC1Q15751 4861 aa12.28□□□□□ -0.44
CLN3-260ENST00000637578 IGHV3OR16-9A0A0B4J2B5 98 aa12.27□□□□□ -0.44
CLN3-260ENST00000637578 COX6A2Q02221 97 aa12.27□□□□□ -0.44
CLN3-260ENST00000637578 PMVKQ15126 192 aa12.27□□□□□ -0.44
CLN3-260ENST00000637578 C5orf38Q86SI9 138 aa12.27□□□□□ -0.44
CLN3-260ENST00000637578 DMBT1Q9UGM3 2413 aaPredicted RBP12.27□□□□□ -0.45
CLN3-260ENST00000637578 NDUFA6P56556 154 aa12.26□□□□□ -0.45
CLN3-260ENST00000637578 FAM19A3Q7Z5A8 133 aa12.26□□□□□ -0.45
CLN3-260ENST00000637578 IGHV1-58A0A0C4DH39 117 aa12.25□□□□□ -0.45
CLN3-260ENST00000637578 A0A0J9YXV3 536 aa12.25□□□□□ -0.45
CLN3-260ENST00000637578 MALP21145 153 aa12.25□□□□□ -0.45
CLN3-260ENST00000637578 IFI27L1Q96BM0 104 aa12.25□□□□□ -0.45
CLN3-260ENST00000637578 COA6Q5JTJ3 125 aaKnown RBP12.24□□□□□ -0.45
CLN3-260ENST00000637578 SPACA4Q8TDM5 124 aa12.24□□□□□ -0.45
CLN3-260ENST00000637578 LEPROTL1O95214 131 aa12.23□□□□□ -0.45
CLN3-260ENST00000637578 CHTF8P0CG12 524 aa12.22□□□□□ -0.45
CLN3-260ENST00000637578 SEC11AP67812 179 aa12.22□□□□□ -0.45
CLN3-260ENST00000637578 GEMIN7Q9H840 131 aaKnown RBP12.22□□□□□ -0.45
CLN3-260ENST00000637578 A0A087WZ39 114 aa12.22□□□□□ -0.45
CLN3-260ENST00000637578 FABP4P15090 132 aa12.22□□□□□ -0.45
CLN3-260ENST00000637578 HERVK_113P63121 156 aa12.22□□□□□ -0.45
CLN3-260ENST00000637578 A0A087WYN8 130 aa12.21□□□□□ -0.46
CLN3-260ENST00000637578 TINCRA0A1B0GVN0 87 aa12.21□□□□□ -0.46
CLN3-260ENST00000637578 KRTAP29-1A8MX34 341 aaPredicted RBP12.2□□□□□ -0.46
CLN3-260ENST00000637578 RPL37AP61513 92 aaKnown RBP12.2□□□□□ -0.46
CLN3-260ENST00000637578 PLAC8Q9NZF1 115 aa12.2□□□□□ -0.46
CLN3-260ENST00000637578 CDKN2A-AS1Q9UH64 79 aa12.2□□□□□ -0.46
CLN3-260ENST00000637578 HSPB8Q9UJY1 196 aa12.2□□□□□ -0.46
CLN3-260ENST00000637578 APOMO95445 188 aa12.19□□□□□ -0.46
CLN3-260ENST00000637578 LINC00526Q96FQ7 95 aa12.19□□□□□ -0.46
CLN3-260ENST00000637578 IGLV4-69A0A075B6H9 119 aa12.18□□□□□ -0.46
CLN3-260ENST00000637578 IGLC3P0DOY3 106 aa12.18□□□□□ -0.46
CLN3-260ENST00000637578 LINC00469Q8N7U9 141 aa12.18□□□□□ -0.46
CLN3-260ENST00000637578 IGLV5-45A0A087WSX0 123 aa12.18□□□□□ -0.46
CLN3-260ENST00000637578 TRAV12-1A0A0B4J245 112 aa12.18□□□□□ -0.46
CLN3-260ENST00000637578 DPH3Q96FX2 82 aa12.18□□□□□ -0.46
CLN3-260ENST00000637578 PKHD1L1Q86WI1 4243 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms