RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 PSMB2P49721 201 aa9.91□□□□□ -0.82
CLN3-242ENST00000635958 ARL17AQ8IVW1 177 aa9.91□□□□□ -0.82
CLN3-242ENST00000635958 A0A0B4J2C4 111 aa9.9□□□□□ -0.82
CLN3-242ENST00000635958 TMEM262E9PQX1 116 aa9.9□□□□□ -0.82
CLN3-242ENST00000635958 Q6ZTC4 211 aa9.9□□□□□ -0.82
CLN3-242ENST00000635958 C20orf203Q8NBC4 194 aa9.9□□□□□ -0.82
CLN3-242ENST00000635958 TNFRSF18Q9Y5U5 241 aa9.9□□□□□ -0.82
CLN3-242ENST00000635958 NANOS2P60321 138 aaKnown RBP9.89□□□□□ -0.83
CLN3-242ENST00000635958 RPL36AP83881 106 aaKnown RBP9.89□□□□□ -0.83
CLN3-242ENST00000635958 TEN1Q86WV5 123 aa9.89□□□□□ -0.83
CLN3-242ENST00000635958 RPL36ALQ969Q0 106 aaKnown RBP9.89□□□□□ -0.83
CLN3-242ENST00000635958 GTSF1LQ9H1H1 148 aa9.89□□□□□ -0.83
CLN3-242ENST00000635958 F5H768 121 aa9.89□□□□□ -0.83
CLN3-242ENST00000635958 CFC1BP0CG36 223 aa9.89□□□□□ -0.83
CLN3-242ENST00000635958 CFC1P0CG37 223 aa9.89□□□□□ -0.83
CLN3-242ENST00000635958 VSIG2Q96IQ7 327 aa9.89□□□□□ -0.83
CLN3-242ENST00000635958 PAX4O43316 350 aa9.88□□□□□ -0.83
CLN3-242ENST00000635958 RPL39P62891 51 aaKnown RBP9.88□□□□□ -0.83
CLN3-242ENST00000635958 ZNRF2Q8NHG8 242 aa9.88□□□□□ -0.83
CLN3-242ENST00000635958 LINC01600Q96MT4 127 aa9.88□□□□□ -0.83
CLN3-242ENST00000635958 LINC00694P0DN24 101 aa9.87□□□□□ -0.83
CLN3-242ENST00000635958 AMELXQ99217 191 aa9.87□□□□□ -0.83
CLN3-242ENST00000635958 LOC100131303A0A0U1RQF7 123 aa9.86□□□□□ -0.83
CLN3-242ENST00000635958 H3BNG1 76 aa9.86□□□□□ -0.83
CLN3-242ENST00000635958 SCGB1C2P0DMR2 95 aa9.86□□□□□ -0.83
CLN3-242ENST00000635958 SMAGPQ0VAQ4 97 aa9.86□□□□□ -0.83
CLN3-242ENST00000635958 TRAV26-1A0A087WT03 109 aa9.86□□□□□ -0.83
CLN3-242ENST00000635958 GAGE12JA6NER3 117 aa9.86□□□□□ -0.83
CLN3-242ENST00000635958 HTN3P15516 51 aa9.86□□□□□ -0.83
CLN3-242ENST00000635958 SMCPP49901 116 aaPredicted RBP9.86□□□□□ -0.83
CLN3-242ENST00000635958 GAGE4Q13068 117 aa9.86□□□□□ -0.83
CLN3-242ENST00000635958 GAGE5Q13069 117 aa9.86□□□□□ -0.83
CLN3-242ENST00000635958 DAZ4Q86SG3 579 aaKnown RBP9.86□□□□□ -0.83
CLN3-242ENST00000635958 DAZ3Q9NR90 486 aaKnown RBP9.86□□□□□ -0.83
CLN3-242ENST00000635958 ERG28Q9UKR5 140 aa9.86□□□□□ -0.83
CLN3-242ENST00000635958 DEFB131BA0A096LNP1 70 aa9.85□□□□□ -0.83
CLN3-242ENST00000635958 GYPEP15421 78 aa9.85□□□□□ -0.83
CLN3-242ENST00000635958 ZNF22P17026 224 aaPredicted RBP9.85□□□□□ -0.83
CLN3-242ENST00000635958 TRAV10A0A0B4J240 114 aa9.84□□□□□ -0.83
CLN3-242ENST00000635958 IGLV4-3A0A075B6K6 122 aa9.84□□□□□ -0.83
CLN3-242ENST00000635958 TCL1BO95988 128 aa9.84□□□□□ -0.83
CLN3-242ENST00000635958 TSPEAR-AS2P59090 65 aa9.84□□□□□ -0.83
CLN3-242ENST00000635958 IGHV3-33P01772 117 aa9.83□□□□□ -0.84
CLN3-242ENST00000635958 MRPS36P82909 103 aaKnown RBP9.83□□□□□ -0.84
CLN3-242ENST00000635958 SPANXA1Q9NS26 97 aa9.83□□□□□ -0.84
CLN3-242ENST00000635958 ATXN8Q156A1 80 aa9.82□□□□□ -0.84
CLN3-242ENST00000635958 MRPL23Q16540 153 aaKnown RBP9.82□□□□□ -0.84
CLN3-242ENST00000635958 A4D1N5 150 aa9.82□□□□□ -0.84
CLN3-242ENST00000635958 SPANXDQ9BXN6 97 aa9.82□□□□□ -0.84
CLN3-242ENST00000635958 SPANXCQ9NY87 97 aa9.82□□□□□ -0.84
CLN3-242ENST00000635958 IGHV3-38A0A0C4DH36 116 aa9.81□□□□□ -0.84
CLN3-242ENST00000635958 TRBV30A0A0K0K1B3 111 aa9.81□□□□□ -0.84
CLN3-242ENST00000635958 TINCRA0A1B0GVN0 87 aa9.81□□□□□ -0.84
CLN3-242ENST00000635958 TIMM17BO60830 172 aa9.81□□□□□ -0.84
CLN3-242ENST00000635958 TIMM21Q9BVV7 248 aa9.81□□□□□ -0.84
CLN3-242ENST00000635958 ICOSQ9Y6W8 199 aa9.81□□□□□ -0.84
CLN3-242ENST00000635958 A0A096LPF7 62 aa9.8□□□□□ -0.84
CLN3-242ENST00000635958 NTM-AS1Q6ZSK4 140 aa9.8□□□□□ -0.84
CLN3-242ENST00000635958 MUSTN1Q8IVN3 82 aa9.8□□□□□ -0.84
CLN3-242ENST00000635958 CDIP1Q9H305 208 aa9.8□□□□□ -0.84
CLN3-242ENST00000635958 IGHV1-58A0A0C4DH39 117 aa9.79□□□□□ -0.84
CLN3-242ENST00000635958 A0A0J9YXY3 114 aa9.79□□□□□ -0.84
CLN3-242ENST00000635958 SLC25A20O43772 301 aa9.79□□□□□ -0.84
CLN3-242ENST00000635958 IFITM1P13164 125 aa9.79□□□□□ -0.84
CLN3-242ENST00000635958 A0A0J9YXV3 536 aa9.79□□□□□ -0.84
CLN3-242ENST00000635958 CKS1BP61024 79 aa9.79□□□□□ -0.84
CLN3-242ENST00000635958 DEFB104AQ8WTQ1 72 aa9.79□□□□□ -0.84
CLN3-242ENST00000635958 CARD19Q96LW7 228 aa9.79□□□□□ -0.84
CLN3-242ENST00000635958 COX6CP09669 75 aa9.78□□□□□ -0.84
CLN3-242ENST00000635958 SPINK8P0C7L1 97 aa9.78□□□□□ -0.84
CLN3-242ENST00000635958 CHCHD7Q9BUK0 85 aa9.78□□□□□ -0.84
CLN3-242ENST00000635958 IGHV3-30-3P0DP02 117 aa9.77□□□□□ -0.84
CLN3-242ENST00000635958 Q6ZUT4 128 aa9.77□□□□□ -0.84
CLN3-242ENST00000635958 COPS9Q8WXC6 57 aa9.77□□□□□ -0.84
CLN3-242ENST00000635958 TRBV6-8A0A0A6YYG3 113 aa9.77□□□□□ -0.85
CLN3-242ENST00000635958 TIRAPP58753 221 aa9.77□□□□□ -0.85
CLN3-242ENST00000635958 C15orf53Q8NAA6 179 aa9.77□□□□□ -0.85
CLN3-242ENST00000635958 ANKRD29Q8N6D5 301 aa9.76□□□□□ -0.85
CLN3-242ENST00000635958 TRBV10-2A0A0K0K1G8 114 aa9.75□□□□□ -0.85
CLN3-242ENST00000635958 RPL13AP40429 203 aaKnown RBP9.75□□□□□ -0.85
CLN3-242ENST00000635958 OPRPNQ99935 248 aaPredicted RBP9.75□□□□□ -0.85
CLN3-242ENST00000635958 C9JAW5 83 aa9.75□□□□□ -0.85
CLN3-242ENST00000635958 MIAQ16674 131 aa9.75□□□□□ -0.85
CLN3-242ENST00000635958 Q1RN00 199 aa9.75□□□□□ -0.85
CLN3-242ENST00000635958 LINC01620Q4KN68 170 aa9.75□□□□□ -0.85
CLN3-242ENST00000635958 H3BT86 120 aa9.74□□□□□ -0.85
CLN3-242ENST00000635958 H7C423 109 aa9.74□□□□□ -0.85
CLN3-242ENST00000635958 CEMP1Q6PRD7 247 aaPredicted RBP9.74□□□□□ -0.85
CLN3-242ENST00000635958 LYPD5Q6UWN5 251 aa9.74□□□□□ -0.85
CLN3-242ENST00000635958 NDUFA12Q9UI09 145 aa9.74□□□□□ -0.85
CLN3-242ENST00000635958 CIRBPQ14011 172 aaKnown RBP9.73□□□□□ -0.85
CLN3-242ENST00000635958 ZFAND6Q6FIF0 208 aa9.73□□□□□ -0.85
CLN3-242ENST00000635958 SFTA2Q6UW10 78 aa9.73□□□□□ -0.85
CLN3-242ENST00000635958 LITAFQ99732 161 aa9.73□□□□□ -0.85
CLN3-242ENST00000635958 TMEM243Q9BU79 118 aa9.73□□□□□ -0.85
CLN3-242ENST00000635958 PPDPFQ9H3Y8 114 aa9.73□□□□□ -0.85
CLN3-242ENST00000635958 UBE2D4Q9Y2X8 147 aa9.73□□□□□ -0.85
CLN3-242ENST00000635958 DYNC2H1Q8NCM8 4307 aaKnown RBP9.73□□□□□ -0.85
CLN3-242ENST00000635958 LELP1Q5T871 98 aa9.72□□□□□ -0.85
CLN3-242ENST00000635958 GEMIN7Q9H840 131 aaKnown RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms