RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 HIST1H2BOP23527 126 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 HIST1H2BBP33778 126 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 FUSP35637 526 aaKnown RBP eCLIP12.52□□□□□ -0.417e-7■■□□□ 14
SQSTM1-216ENST00000626660 HIST1H2BDP58876 126 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 HIST1H2BCP62807 126 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 SEC11AP67812 179 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 HIST2H2BEQ16778 126 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 C5orf38Q86SI9 138 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 C15orf56Q8N910 161 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 HIST1H2BHQ93079 126 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 HIST1H2BNQ99877 126 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 HIST1H2BMQ99879 126 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 DNAH11Q96DT5 4516 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 PMVKQ15126 192 aa12.51□□□□□ -0.41
SQSTM1-216ENST00000626660 LINC00242Q5T6M2 205 aa12.51□□□□□ -0.41
SQSTM1-216ENST00000626660 IGHV3OR16-9A0A0B4J2B5 98 aa12.5□□□□□ -0.41
SQSTM1-216ENST00000626660 APOMO95445 188 aa12.5□□□□□ -0.41
SQSTM1-216ENST00000626660 NDUFA6P56556 154 aa12.5□□□□□ -0.41
SQSTM1-216ENST00000626660 FAM19A2Q8N3H0 131 aa12.5□□□□□ -0.41
SQSTM1-216ENST00000626660 CST9LQ9H4G1 147 aa12.5□□□□□ -0.41
SQSTM1-216ENST00000626660 LINC00310P59036 64 aa12.49□□□□□ -0.41
SQSTM1-216ENST00000626660 HIGD2BQ4VC39 106 aa12.49□□□□□ -0.41
SQSTM1-216ENST00000626660 FAM19A3Q7Z5A8 133 aa12.49□□□□□ -0.41
SQSTM1-216ENST00000626660 GEMIN7Q9H840 131 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-216ENST00000626660 GVQW2A0A096LPI5 108 aaPredicted RBP12.48□□□□□ -0.41
SQSTM1-216ENST00000626660 GCSHP23434 173 aa12.48□□□□□ -0.41
SQSTM1-216ENST00000626660 HERVK_113P63121 156 aa12.48□□□□□ -0.41
SQSTM1-216ENST00000626660 PKHD1P08F94 4074 aa12.48□□□□□ -0.41
SQSTM1-216ENST00000626660 COX6A2Q02221 97 aa12.47□□□□□ -0.41
SQSTM1-216ENST00000626660 A0A087WZ39 114 aa12.46□□□□□ -0.41
SQSTM1-216ENST00000626660 A0A0J9YXV3 536 aa12.46□□□□□ -0.41
SQSTM1-216ENST00000626660 ZNF561-AS1K7EIQ3 104 aa12.46□□□□□ -0.41
SQSTM1-216ENST00000626660 IFI27L1Q96BM0 104 aa12.46□□□□□ -0.41
SQSTM1-216ENST00000626660 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.45□□□□□ -0.42
SQSTM1-216ENST00000626660 TINCRA0A1B0GVN0 87 aa12.45□□□□□ -0.42
SQSTM1-216ENST00000626660 NUPR1O60356 82 aa12.45□□□□□ -0.42
SQSTM1-216ENST00000626660 LEPROTL1O95214 131 aa12.45□□□□□ -0.42
SQSTM1-216ENST00000626660 CNBPP62633 177 aaKnown RBP12.44□□□□□ -0.42
SQSTM1-216ENST00000626660 LINC01561Q8N1V8 128 aa12.44□□□□□ -0.42
SQSTM1-216ENST00000626660 OR10D4PQ8NGN7 298 aa12.44□□□□□ -0.42
SQSTM1-216ENST00000626660 ORAOV1Q8WV07 137 aa12.44□□□□□ -0.42
SQSTM1-216ENST00000626660 IGHV3-64A0A075B6Q5 118 aa12.43□□□□□ -0.42
SQSTM1-216ENST00000626660 LINC00469Q8N7U9 141 aa12.43□□□□□ -0.42
SQSTM1-216ENST00000626660 HSPB8Q9UJY1 196 aa12.43□□□□□ -0.42
SQSTM1-216ENST00000626660 SPAG11BQ08648 103 aa12.42□□□□□ -0.42
SQSTM1-216ENST00000626660 FABP4P15090 132 aa12.41□□□□□ -0.42
SQSTM1-216ENST00000626660 KRTAP10-1P60331 282 aa12.41□□□□□ -0.42
SQSTM1-216ENST00000626660 LINC00526Q96FQ7 95 aa12.41□□□□□ -0.42
SQSTM1-216ENST00000626660 PACRGQ96M98 296 aaPredicted RBP12.41□□□□□ -0.42
SQSTM1-216ENST00000626660 CDKN2A-AS1Q9UH64 79 aa12.41□□□□□ -0.42
SQSTM1-216ENST00000626660 TRAV12-1A0A0B4J245 112 aa12.4□□□□□ -0.42
SQSTM1-216ENST00000626660 IGLC3P0DOY3 106 aa12.4□□□□□ -0.42
SQSTM1-216ENST00000626660 C9orf163Q8N9P6 203 aa12.4□□□□□ -0.42
SQSTM1-216ENST00000626660 CHAC1Q9BUX1 264 aa12.4□□□□□ -0.42
SQSTM1-216ENST00000626660 KIAA1109Q2LD37 5005 aa12.4□□□□□ -0.42
SQSTM1-216ENST00000626660 DYNC1H1Q14204 4646 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-216ENST00000626660 RYR1P21817 5038 aa12.39□□□□□ -0.43
SQSTM1-216ENST00000626660 IGLV4-69A0A075B6H9 119 aa12.39□□□□□ -0.43
SQSTM1-216ENST00000626660 IGLV5-45A0A087WSX0 123 aa12.39□□□□□ -0.43
SQSTM1-216ENST00000626660 SLPIP03973 132 aa12.39□□□□□ -0.43
SQSTM1-216ENST00000626660 LINC01620Q4KN68 170 aa12.39□□□□□ -0.43
SQSTM1-216ENST00000626660 COA6Q5JTJ3 125 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-216ENST00000626660 C2orf48Q96LS8 159 aa12.39□□□□□ -0.43
SQSTM1-216ENST00000626660 CHTOPQ9Y3Y2 248 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-216ENST00000626660 DNAH5Q8TE73 4624 aa12.38□□□□□ -0.43
SQSTM1-216ENST00000626660 H3BRM9 83 aa12.38□□□□□ -0.43
SQSTM1-216ENST00000626660 SYCNQ0VAF6 134 aa12.38□□□□□ -0.43
SQSTM1-216ENST00000626660 CARD19Q96LW7 228 aa12.38□□□□□ -0.43
SQSTM1-216ENST00000626660 CAMK2N2Q96S95 79 aa12.38□□□□□ -0.43
SQSTM1-216ENST00000626660 H0Y8G0 127 aa12.37□□□□□ -0.43
SQSTM1-216ENST00000626660 F8WDY8 70 aa12.36□□□□□ -0.43
SQSTM1-216ENST00000626660 PRSS2P07478 247 aa12.36□□□□□ -0.43
SQSTM1-216ENST00000626660 MAP1LC3CQ9BXW4 147 aa12.35□□□□□ -0.43
SQSTM1-216ENST00000626660 TOMM7Q9P0U1 55 aa12.35□□□□□ -0.43
SQSTM1-216ENST00000626660 PKIGQ9Y2B9 76 aa12.35□□□□□ -0.43
SQSTM1-216ENST00000626660 C11orf86A6NJI1 115 aa12.34□□□□□ -0.43
SQSTM1-216ENST00000626660 F8VRH5 84 aa12.34□□□□□ -0.43
SQSTM1-216ENST00000626660 NDUFA1O15239 70 aa12.34□□□□□ -0.43
SQSTM1-216ENST00000626660 MRPL35Q9NZE8 188 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-216ENST00000626660 SMIM1B2RUZ4 78 aa12.33□□□□□ -0.44
SQSTM1-216ENST00000626660 SPINK8P0C7L1 97 aa12.33□□□□□ -0.44
SQSTM1-216ENST00000626660 ZNF22P17026 224 aaPredicted RBP12.33□□□□□ -0.44
SQSTM1-216ENST00000626660 Q6ZRU5 148 aa12.33□□□□□ -0.44
SQSTM1-216ENST00000626660 LRP1BQ9NZR2 4599 aa12.32□□□□□ -0.44
SQSTM1-216ENST00000626660 CDK2AP2O75956 126 aa12.32□□□□□ -0.44
SQSTM1-216ENST00000626660 KIAA0087Q14695 138 aa12.32□□□□□ -0.44
SQSTM1-216ENST00000626660 ODF1Q14990 250 aa12.32□□□□□ -0.44
SQSTM1-216ENST00000626660 C6orf226Q5I0X4 101 aa12.32□□□□□ -0.44
SQSTM1-216ENST00000626660 TMEM170BQ5T4T1 132 aa12.32□□□□□ -0.44
SQSTM1-216ENST00000626660 Q8IZM0 81 aa12.32□□□□□ -0.44
SQSTM1-216ENST00000626660 CKS1BP61024 79 aa12.31□□□□□ -0.44
SQSTM1-216ENST00000626660 SDIM1Q6ZPB5 146 aa12.31□□□□□ -0.44
SQSTM1-216ENST00000626660 S100A6P06703 90 aa12.3□□□□□ -0.44
SQSTM1-216ENST00000626660 COX7B2Q8TF08 81 aa12.3□□□□□ -0.44
SQSTM1-216ENST00000626660 RNF151Q2KHN1 245 aa12.29□□□□□ -0.44
SQSTM1-216ENST00000626660 UNQ6190/PRO20217Q6UXQ8 127 aa12.29□□□□□ -0.44
SQSTM1-216ENST00000626660 FAM30AQ9NZY2 134 aa12.29□□□□□ -0.44
SQSTM1-216ENST00000626660 CXCL5P42830 114 aa12.28□□□□□ -0.44
SQSTM1-216ENST00000626660 Q6ZSA8 131 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms