RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 A0A087WYN8 130 aa11.23□□□□□ -0.61
PDLIM2-220ENST00000622226 PRR3P79522 188 aaKnown RBP11.23□□□□□ -0.61
PDLIM2-220ENST00000622226 PYGO1Q9Y3Y4 419 aa11.23□□□□□ -0.61
PDLIM2-220ENST00000622226 DEFB116Q30KQ4 102 aa11.23□□□□□ -0.61
PDLIM2-220ENST00000622226 CD164L2Q6UWJ8 174 aa11.23□□□□□ -0.61
PDLIM2-220ENST00000622226 IGLV2-11P01706 119 aa11.22□□□□□ -0.61
PDLIM2-220ENST00000622226 C10orf99Q6UWK7 81 aa11.22□□□□□ -0.61
PDLIM2-220ENST00000622226 PRR9Q5T870 116 aa11.22□□□□□ -0.61
PDLIM2-220ENST00000622226 CSPG4Q6UVK1 2322 aa11.22□□□□□ -0.61
PDLIM2-220ENST00000622226 RNASE3P12724 160 aaKnown RBP11.22□□□□□ -0.61
PDLIM2-220ENST00000622226 Q9UF83 564 aa11.22□□□□□ -0.61
PDLIM2-220ENST00000622226 OTOGLQ3ZCN5 2332 aa11.21□□□□□ -0.61
PDLIM2-220ENST00000622226 C11orf21Q9P2W6 132 aa11.21□□□□□ -0.61
PDLIM2-220ENST00000622226 PLAC8L1A1L4L8 177 aa11.21□□□□□ -0.61
PDLIM2-220ENST00000622226 IGHV6-1A0A0B4J1U7 121 aa11.21□□□□□ -0.62
PDLIM2-220ENST00000622226 C9orf116Q5BN46 136 aaPredicted RBP11.21□□□□□ -0.62
PDLIM2-220ENST00000622226 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.21□□□□□ -0.62
PDLIM2-220ENST00000622226 TRBV6-4A0A1B0GX49 114 aa11.2□□□□□ -0.62
PDLIM2-220ENST00000622226 C7orf33Q8WU49 177 aa11.2□□□□□ -0.62
PDLIM2-220ENST00000622226 C2orf16Q68DN1 1984 aa11.2□□□□□ -0.62
PDLIM2-220ENST00000622226 UBE2D2P62837 147 aa11.2□□□□□ -0.62
PDLIM2-220ENST00000622226 PLXNB3Q9ULL4 1909 aa11.19□□□□□ -0.62
PDLIM2-220ENST00000622226 HILS1P60008 231 aa11.19□□□□□ -0.62
PDLIM2-220ENST00000622226 SONP18583 2426 aaKnown RBP11.19□□□□□ -0.62
PDLIM2-220ENST00000622226 TNFRSF13BO14836 293 aaPredicted RBP11.19□□□□□ -0.62
PDLIM2-220ENST00000622226 C1orf137Q5JT78 98 aa11.18□□□□□ -0.62
PDLIM2-220ENST00000622226 SHISA2Q6UWI4 295 aa11.18□□□□□ -0.62
PDLIM2-220ENST00000622226 Q8N814 137 aa11.18□□□□□ -0.62
PDLIM2-220ENST00000622226 IGLV4-69A0A075B6H9 119 aa11.18□□□□□ -0.62
PDLIM2-220ENST00000622226 C10orf25Q5T742 122 aa11.18□□□□□ -0.62
PDLIM2-220ENST00000622226 ANAPC1Q9H1A4 1944 aa11.18□□□□□ -0.62
PDLIM2-220ENST00000622226 IL17DQ8TAD2 202 aa11.17□□□□□ -0.62
PDLIM2-220ENST00000622226 TECTAO75443 2155 aa11.17□□□□□ -0.62
PDLIM2-220ENST00000622226 PTPN13Q12923 2485 aa11.16□□□□□ -0.62
PDLIM2-220ENST00000622226 ZNF706Q9Y5V0 76 aaPredicted RBP11.16□□□□□ -0.62
PDLIM2-220ENST00000622226 CYSRT1A8MQ03 144 aa11.16□□□□□ -0.62
PDLIM2-220ENST00000622226 ODF3BA8MYP8 253 aa11.16□□□□□ -0.62
PDLIM2-220ENST00000622226 H0Y9P7 68 aa11.16□□□□□ -0.62
PDLIM2-220ENST00000622226 NAV3Q8IVL0 2385 aa11.16□□□□□ -0.62
PDLIM2-220ENST00000622226 CIRBP-AS1Q8TBR5 109 aa11.16□□□□□ -0.62
PDLIM2-220ENST00000622226 C2CD3Q4AC94 2353 aa11.16□□□□□ -0.62
PDLIM2-220ENST00000622226 DOPEY1Q5JWR5 2465 aa11.15□□□□□ -0.62
PDLIM2-220ENST00000622226 IGF2-ASQ6U949 168 aa11.15□□□□□ -0.62
PDLIM2-220ENST00000622226 IGFL2Q6UWQ7 119 aa11.15□□□□□ -0.62
PDLIM2-220ENST00000622226 LINC00575Q6W349 94 aa11.15□□□□□ -0.62
PDLIM2-220ENST00000622226 SRCAPQ6ZRS2 3230 aa11.15□□□□□ -0.62
PDLIM2-220ENST00000622226 DAZAP2Q15038 168 aaPredicted RBP11.15□□□□□ -0.62
PDLIM2-220ENST00000622226 OXLD1Q5BKU9 147 aa11.15□□□□□ -0.62
PDLIM2-220ENST00000622226 POLR2KP53803 58 aaKnown RBP11.14□□□□□ -0.63
PDLIM2-220ENST00000622226 LINC00310P59036 64 aa11.14□□□□□ -0.63
PDLIM2-220ENST00000622226 UNQ6190/PRO20217Q6UXQ8 127 aa11.14□□□□□ -0.63
PDLIM2-220ENST00000622226 C4orf26Q17RF5 130 aa11.14□□□□□ -0.63
PDLIM2-220ENST00000622226 TRBV10-3A0A0K0K1G6 114 aa11.13□□□□□ -0.63
PDLIM2-220ENST00000622226 TSPEAR-AS2P59090 65 aa11.13□□□□□ -0.63
PDLIM2-220ENST00000622226 TMEM254Q8TBM7 123 aa11.13□□□□□ -0.63
PDLIM2-220ENST00000622226 KPRPQ5T749 579 aaPredicted RBP11.13□□□□□ -0.63
PDLIM2-220ENST00000622226 NUP210Q8TEM1 1887 aaPredicted RBP11.13□□□□□ -0.63
PDLIM2-220ENST00000622226 COX6A2Q02221 97 aa11.12□□□□□ -0.63
PDLIM2-220ENST00000622226 ZNF580Q9UK33 172 aa11.12□□□□□ -0.63
PDLIM2-220ENST00000622226 TMEM131Q92545 1883 aa11.12□□□□□ -0.63
PDLIM2-220ENST00000622226 PRO0628Q9UI54 55 aa11.12□□□□□ -0.63
PDLIM2-220ENST00000622226 EIF4EBP1Q13541 118 aaPredicted RBP11.12□□□□□ -0.63
PDLIM2-220ENST00000622226 COX17Q14061 63 aa11.12□□□□□ -0.63
PDLIM2-220ENST00000622226 CDC42SE2Q9NRR3 84 aa11.11□□□□□ -0.63
PDLIM2-220ENST00000622226 ADAMTSL4-AS1Q5T5F5 129 aa11.11□□□□□ -0.63
PDLIM2-220ENST00000622226 URB1-AS1Q96HZ7 61 aa11.11□□□□□ -0.63
PDLIM2-220ENST00000622226 LMO4P61968 165 aa11.11□□□□□ -0.63
PDLIM2-220ENST00000622226 ZNF106Q9H2Y7 1883 aaKnown RBP11.11□□□□□ -0.63
PDLIM2-220ENST00000622226 IGIPA6NJ69 53 aa11.1□□□□□ -0.63
PDLIM2-220ENST00000622226 Q8IZM0 81 aa11.1□□□□□ -0.63
PDLIM2-220ENST00000622226 SBSPONQ8IVN8 264 aa11.1□□□□□ -0.63
PDLIM2-220ENST00000622226 LINC00242Q5T6M2 205 aa11.09□□□□□ -0.63
PDLIM2-220ENST00000622226 C18orf65Q6ZTR6 163 aa11.09□□□□□ -0.63
PDLIM2-220ENST00000622226 CRIP3Q6Q6R5 217 aa11.09□□□□□ -0.63
PDLIM2-220ENST00000622226 LINC00846Q9NV44 126 aa11.09□□□□□ -0.63
PDLIM2-220ENST00000622226 Q8N6K4 173 aa11.08□□□□□ -0.64
PDLIM2-220ENST00000622226 A8MTW9 85 aa11.08□□□□□ -0.64
PDLIM2-220ENST00000622226 RPL28P46779 137 aaKnown RBP11.08□□□□□ -0.64
PDLIM2-220ENST00000622226 LELP1Q5T871 98 aa11.08□□□□□ -0.64
PDLIM2-220ENST00000622226 HIVEP2P31629 2446 aa11.08□□□□□ -0.64
PDLIM2-220ENST00000622226 Q6YL49 198 aa11.07□□□□□ -0.64
PDLIM2-220ENST00000622226 KRTAP10-9P60411 292 aa11.07□□□□□ -0.64
PDLIM2-220ENST00000622226 COL4A4P53420 1690 aaPredicted RBP11.07□□□□□ -0.64
PDLIM2-220ENST00000622226 A0A087WSZ3 146 aa11.07□□□□□ -0.64
PDLIM2-220ENST00000622226 SMIM1B2RUZ4 78 aa11.06□□□□□ -0.64
PDLIM2-220ENST00000622226 SPAG11AQ6PDA7 123 aa11.06□□□□□ -0.64
PDLIM2-220ENST00000622226 LINC00574Q9H8X3 128 aa11.06□□□□□ -0.64
PDLIM2-220ENST00000622226 C6orf223Q8N319 242 aa11.04□□□□□ -0.64
PDLIM2-220ENST00000622226 HCG22E2RYF7 251 aa11.04□□□□□ -0.64
PDLIM2-220ENST00000622226 AGRNO00468 2067 aa11.04□□□□□ -0.64
PDLIM2-220ENST00000622226 PLA2G1BP04054 148 aaKnown RBP11.04□□□□□ -0.64
PDLIM2-220ENST00000622226 KLLNB2CW77 178 aa11.04□□□□□ -0.64
PDLIM2-220ENST00000622226 TRAV10A0A0B4J240 114 aa11.03□□□□□ -0.64
PDLIM2-220ENST00000622226 EML5Q05BV3 1969 aa11.03□□□□□ -0.64
PDLIM2-220ENST00000622226 REG3GQ6UW15 175 aa11.03□□□□□ -0.64
PDLIM2-220ENST00000622226 CDIP1Q9H305 208 aa11.02□□□□□ -0.64
PDLIM2-220ENST00000622226 PCNX3Q9H6A9 2034 aa11.02□□□□□ -0.65
PDLIM2-220ENST00000622226 PRLHP81277 87 aa11.01□□□□□ -0.65
PDLIM2-220ENST00000622226 EDN2P20800 178 aa11.01□□□□□ -0.65
PDLIM2-220ENST00000622226 Q9BRP9 147 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms