RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 PRYO14603 147 aa3.69□□□□□ -1.82
VPS13D-214ENST00000620676 FAM215AQ9Y5M1 114 aa3.69□□□□□ -1.82
VPS13D-214ENST00000620676 CRYGDP07320 174 aa3.69□□□□□ -1.82
VPS13D-214ENST00000620676 LINC01547P58512 204 aaPredicted RBP3.68□□□□□ -1.82
VPS13D-214ENST00000620676 DIRC1Q969H9 104 aa3.68□□□□□ -1.82
VPS13D-214ENST00000620676 CAMK2N2Q96S95 79 aa3.68□□□□□ -1.82
VPS13D-214ENST00000620676 ETDCA0A1B0GVM5 59 aa3.68□□□□□ -1.82
VPS13D-214ENST00000620676 CDSNQ15517 529 aa3.68□□□□□ -1.82
VPS13D-214ENST00000620676 C6orf99Q4VX62 202 aa3.68□□□□□ -1.82
VPS13D-214ENST00000620676 Q8N814 137 aa3.68□□□□□ -1.82
VPS13D-214ENST00000620676 IGKV2D-24A0A075B6R9 120 aa3.68□□□□□ -1.82
VPS13D-214ENST00000620676 IGLV2-18A0A075B6J9 118 aa3.68□□□□□ -1.82
VPS13D-214ENST00000620676 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.68□□□□□ -1.82
VPS13D-214ENST00000620676 CGB3P0DN86 165 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 CGB7P0DN87 165 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 Q6ZQY7 126 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 Q8N3U1 123 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 EPG5Q9HCE0 2579 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 KAAG1Q9UBP8 84 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 CHCHD10Q8WYQ3 142 aaPredicted RBP3.67□□□□□ -1.82
VPS13D-214ENST00000620676 IGKV2-28A0A075B6P5 120 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 IGKV2D-28P01615 120 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 DKK4Q9UBT3 224 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 COX6B1P14854 86 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 ATP5EP56381 51 aaPredicted RBP3.67□□□□□ -1.82
VPS13D-214ENST00000620676 Q8N9W7 124 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 C5orf56Q8N8D9 126 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 ANKRD17O75179 2603 aaKnown RBP3.67□□□□□ -1.82
VPS13D-214ENST00000620676 TMEM254Q8TBM7 123 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 FLNBO75369 2602 aaKnown RBP3.67□□□□□ -1.82
VPS13D-214ENST00000620676 NDUFC1O43677 76 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 RNF138Q8WVD3 245 aa3.67□□□□□ -1.82
VPS13D-214ENST00000620676 EML5Q05BV3 1969 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 KLK12Q9UKR0 248 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 SPAG11BQ08648 103 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 LINC00337Q8N6G1 96 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 UBE2D4Q9Y2X8 147 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 C10orf99Q6UWK7 81 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 RPL37AP8A6NKH3 93 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 RNF223E7ERA6 249 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 NOTCH4Q99466 2003 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 ZNF73O43830 326 aaPredicted RBP3.66□□□□□ -1.82
VPS13D-214ENST00000620676 PDE6GP18545 87 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 SPAG11AQ6PDA7 123 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 FLG2Q5D862 2391 aaPredicted RBP3.66□□□□□ -1.82
VPS13D-214ENST00000620676 DEFB112Q30KQ8 113 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 MDFIQ99750 246 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 F8WDY8 70 aa3.66□□□□□ -1.82
VPS13D-214ENST00000620676 A0A0J9YX75 114 aa3.65□□□□□ -1.82
VPS13D-214ENST00000620676 POLR2KP53803 58 aaKnown RBP3.65□□□□□ -1.82
VPS13D-214ENST00000620676 LINC00208Q96KT6 92 aa3.65□□□□□ -1.82
VPS13D-214ENST00000620676 SRCAPQ6ZRS2 3230 aa3.65□□□□□ -1.83
VPS13D-214ENST00000620676 PSCAO43653 123 aa3.65□□□□□ -1.83
VPS13D-214ENST00000620676 PCOTHQ58A44 107 aa3.65□□□□□ -1.83
VPS13D-214ENST00000620676 MUC7Q8TAX7 377 aa3.65□□□□□ -1.83
VPS13D-214ENST00000620676 WFDC10AQ9H1F0 79 aa3.65□□□□□ -1.83
VPS13D-214ENST00000620676 LENEPQ9Y5L5 61 aa3.65□□□□□ -1.83
VPS13D-214ENST00000620676 C18orf65Q6ZTR6 163 aa3.64□□□□□ -1.83
VPS13D-214ENST00000620676 C6orf223Q8N319 242 aa3.64□□□□□ -1.83
VPS13D-214ENST00000620676 NTM-AS1Q6ZSK4 140 aa3.64□□□□□ -1.83
VPS13D-214ENST00000620676 SETD2Q9BYW2 2564 aaPredicted RBP3.64□□□□□ -1.83
VPS13D-214ENST00000620676 Q8N6K4 173 aa3.64□□□□□ -1.83
VPS13D-214ENST00000620676 CYSTM1Q9H1C7 97 aa3.64□□□□□ -1.83
VPS13D-214ENST00000620676 ADAMTS9Q9P2N4 1935 aa3.64□□□□□ -1.83
VPS13D-214ENST00000620676 PLA2G2AP14555 144 aa3.64□□□□□ -1.83
VPS13D-214ENST00000620676 MED14OSP0DP75 135 aa3.64□□□□□ -1.83
VPS13D-214ENST00000620676 ESRGQ1W209 222 aa3.64□□□□□ -1.83
VPS13D-214ENST00000620676 SBSPONQ8IVN8 264 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 ZFHX2Q9C0A1 2572 aaPredicted RBP3.63□□□□□ -1.83
VPS13D-214ENST00000620676 COL5A1P20908 1838 aaPredicted RBP3.63□□□□□ -1.83
VPS13D-214ENST00000620676 A0A1W2PNU3 283 aaPredicted RBP3.63□□□□□ -1.83
VPS13D-214ENST00000620676 LINC01546A6NGU7 62 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 IGLV1-47P01700 117 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 LINC00242Q5T6M2 205 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 EIF4EBP3O60516 100 aaPredicted RBP3.63□□□□□ -1.83
VPS13D-214ENST00000620676 REG3AQ06141 175 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 UBE2DNLQ8IWF7 75 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 LINC00482Q8N8I6 264 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 CHCHD7Q9BUK0 85 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 Q6ZVQ6 151 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 PRRC2CQ9Y520 2896 aaKnown RBP3.63□□□□□ -1.83
VPS13D-214ENST00000620676 FSHBP01225 129 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 FAM222AQ5U5X8 452 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 CCL24O00175 119 aa3.63□□□□□ -1.83
VPS13D-214ENST00000620676 B4DSR2 109 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 IBA57-AS1B1ANH7 110 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 ATG2AQ2TAZ0 1938 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 C10orf142B7Z368 130 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 LY6LH3BQJ8 138 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 MAST4O15021 2626 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 IGKV2-24A0A0C4DH68 120 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 LINC00574Q9H8X3 128 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 PLAC8L1A1L4L8 177 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 TM2D3Q9BRN9 247 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 TRBV10-3A0A0K0K1G6 114 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 PTPRSQ13332 1948 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 NDUFB1O75438 58 aa3.62□□□□□ -1.83
VPS13D-214ENST00000620676 A8MUN3 132 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 SMIM1B2RUZ4 78 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 DEFB121Q5J5C9 76 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms