RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 SCGB3A1Q96QR1 104 aa6.89□□□□□ -1.31
SYNE1-240ENST00000610489 PKD1P98161 4303 aa6.89□□□□□ -1.31
SYNE1-240ENST00000610489 LINC00959A0A1B0GUT2 108 aa6.88□□□□□ -1.31
SYNE1-240ENST00000610489 PSCAO43653 123 aa6.88□□□□□ -1.31
SYNE1-240ENST00000610489 DNAH11Q96DT5 4516 aa6.88□□□□□ -1.31
SYNE1-240ENST00000610489 KRTAP26-1Q6PEX3 210 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 Q6ZN92 141 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 LINC00336Q6ZUF6 198 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 C12orf57Q99622 126 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 HECTD4Q9Y4D8 3996 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 TRAV13-1A0A0B4J241 112 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 PTTG1IPP53801 180 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 SS18Q15532 418 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 PAPPA-AS1Q5QFB9 102 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 TEX43Q6ZNM6 134 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 LINC00173Q6ZV60 143 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 FAM19A2Q8N3H0 131 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 MAPKAPK5-AS1Q8N8E1 139 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 CHCHD10Q8WYQ3 142 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-240ENST00000610489 AMELXQ99217 191 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 VCX2Q9H322 139 aa6.87□□□□□ -1.31
SYNE1-240ENST00000610489 CCL25O15444 150 aa6.86□□□□□ -1.31
SYNE1-240ENST00000610489 PYY3Q5JQD4 70 aa6.86□□□□□ -1.31
SYNE1-240ENST00000610489 ZC2HC1BQ5TFG8 222 aa6.86□□□□□ -1.31
SYNE1-240ENST00000610489 C2orf88Q9BSF0 95 aa6.86□□□□□ -1.31
SYNE1-240ENST00000610489 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-240ENST00000610489 XCL1P47992 114 aa6.85□□□□□ -1.31
SYNE1-240ENST00000610489 JOSD1Q15040 202 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-240ENST00000610489 LRCOL1A6NCL2 159 aa6.85□□□□□ -1.31
SYNE1-240ENST00000610489 GAGE12HA6NDE8 117 aa6.85□□□□□ -1.31
SYNE1-240ENST00000610489 ATP5LO75964 103 aa6.85□□□□□ -1.31
SYNE1-240ENST00000610489 PLA2G1BP04054 148 aaKnown RBP6.85□□□□□ -1.31
SYNE1-240ENST00000610489 BAALCQ8WXS3 180 aa6.85□□□□□ -1.31
SYNE1-240ENST00000610489 PKHD1P08F94 4074 aa6.84□□□□□ -1.31
SYNE1-240ENST00000610489 A0A087WTM6 91 aa6.84□□□□□ -1.31
SYNE1-240ENST00000610489 UBE2D1P51668 147 aa6.84□□□□□ -1.31
SYNE1-240ENST00000610489 CD164L2Q6UWJ8 174 aa6.84□□□□□ -1.31
SYNE1-240ENST00000610489 FOXI1Q12951 378 aa6.83□□□□□ -1.32
SYNE1-240ENST00000610489 WFDC2Q14508 124 aa6.83□□□□□ -1.32
SYNE1-240ENST00000610489 PMVKQ15126 192 aa6.83□□□□□ -1.32
SYNE1-240ENST00000610489 LECT2O14960 151 aa6.82□□□□□ -1.32
SYNE1-240ENST00000610489 LEPROTL1O95214 131 aa6.82□□□□□ -1.32
SYNE1-240ENST00000610489 LINC00242Q5T6M2 205 aa6.82□□□□□ -1.32
SYNE1-240ENST00000610489 IFI27L1Q96BM0 104 aa6.82□□□□□ -1.32
SYNE1-240ENST00000610489 CST9LQ9H4G1 147 aa6.82□□□□□ -1.32
SYNE1-240ENST00000610489 FAM19A3Q7Z5A8 133 aa6.82□□□□□ -1.32
SYNE1-240ENST00000610489 IGHV3OR16-9A0A0B4J2B5 98 aa6.81□□□□□ -1.32
SYNE1-240ENST00000610489 A0A1B0GVY2 172 aa6.81□□□□□ -1.32
SYNE1-240ENST00000610489 B5MCH6 92 aa6.81□□□□□ -1.32
SYNE1-240ENST00000610489 USP17L23D6RBM5 183 aa6.81□□□□□ -1.32
SYNE1-240ENST00000610489 HSPB8Q9UJY1 196 aa6.81□□□□□ -1.32
SYNE1-240ENST00000610489 COX7A2LO14548 114 aa6.8□□□□□ -1.32
SYNE1-240ENST00000610489 PRSS1P07477 247 aa6.8□□□□□ -1.32
SYNE1-240ENST00000610489 COX6A2Q02221 97 aa6.8□□□□□ -1.32
SYNE1-240ENST00000610489 A0A0J9YXV3 536 aa6.8□□□□□ -1.32
SYNE1-240ENST00000610489 SEC11AP67812 179 aa6.8□□□□□ -1.32
SYNE1-240ENST00000610489 C14orf177Q52M58 125 aa6.8□□□□□ -1.32
SYNE1-240ENST00000610489 C5orf38Q86SI9 138 aa6.8□□□□□ -1.32
SYNE1-240ENST00000610489 Q8N814 137 aa6.8□□□□□ -1.32
SYNE1-240ENST00000610489 C15orf56Q8N910 161 aa6.8□□□□□ -1.32
SYNE1-240ENST00000610489 FAM30AQ9NZY2 134 aa6.8□□□□□ -1.32
SYNE1-240ENST00000610489 DNAH5Q8TE73 4624 aa6.79□□□□□ -1.32
SYNE1-240ENST00000610489 TRAV12-1A0A0B4J245 112 aa6.79□□□□□ -1.32
SYNE1-240ENST00000610489 TINCRA0A1B0GVN0 87 aa6.79□□□□□ -1.32
SYNE1-240ENST00000610489 HERVK_113P63121 156 aa6.79□□□□□ -1.32
SYNE1-240ENST00000610489 RNF151Q2KHN1 245 aa6.79□□□□□ -1.32
SYNE1-240ENST00000610489 GEMIN7Q9H840 131 aaKnown RBP6.79□□□□□ -1.32
SYNE1-240ENST00000610489 SCGB1D1O95968 90 aa6.78□□□□□ -1.32
SYNE1-240ENST00000610489 C3orf79P0CE67 100 aa6.78□□□□□ -1.32
SYNE1-240ENST00000610489 S100A12P80511 92 aa6.78□□□□□ -1.32
SYNE1-240ENST00000610489 IGLV4-69A0A075B6H9 119 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 A0A087WZ39 114 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 IGHV1-58A0A0C4DH39 117 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 IGLC3P0DOY3 106 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 KRTAP10-2P60368 255 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 SPATA12Q7Z6I5 190 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 CHAC1Q9BUX1 264 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 CDKN2A-AS1Q9UH64 79 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-240ENST00000610489 IGLV5-45A0A087WSX0 123 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 GVQW2A0A096LPI5 108 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-240ENST00000610489 hDV102S1A0JD36 115 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 APOMO95445 188 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 KRTDAPP60985 99 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 LINC00469Q8N7U9 141 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 MAP1LC3CQ9BXW4 147 aa6.77□□□□□ -1.33
SYNE1-240ENST00000610489 CHTOPQ9Y3Y2 248 aaKnown RBP6.77□□□□□ -1.33
SYNE1-240ENST00000610489 H0Y8G0 127 aa6.76□□□□□ -1.33
SYNE1-240ENST00000610489 HIGD2BQ4VC39 106 aa6.76□□□□□ -1.33
SYNE1-240ENST00000610489 LINC01561Q8N1V8 128 aa6.76□□□□□ -1.33
SYNE1-240ENST00000610489 NTN5Q8WTR8 489 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-240ENST00000610489 MRPL35Q9NZE8 188 aaKnown RBP6.76□□□□□ -1.33
SYNE1-240ENST00000610489 DYNC1H1Q14204 4646 aaKnown RBP6.76□□□□□ -1.33
SYNE1-240ENST00000610489 IGHV3-64A0A075B6Q5 118 aa6.75□□□□□ -1.33
SYNE1-240ENST00000610489 C11orf86A6NJI1 115 aa6.75□□□□□ -1.33
SYNE1-240ENST00000610489 F8VRH5 84 aa6.75□□□□□ -1.33
SYNE1-240ENST00000610489 FUSP35637 526 aaKnown RBP eCLIP6.75□□□□□ -1.33
SYNE1-240ENST00000610489 EPPK1P58107 5090 aaKnown RBP6.75□□□□□ -1.33
SYNE1-240ENST00000610489 ORAOV1Q8WV07 137 aa6.74□□□□□ -1.33
SYNE1-240ENST00000610489 IGLV5-52A0A0A0MRZ9 124 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms