RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-222	ENST00000600320	USP17L23	D6RBM5	183 aa		13.17	□□□□□ -0.3
SHKBP1-222	ENST00000600320	FAM19A3	Q7Z5A8	133 aa		13.17	□□□□□ -0.3
SHKBP1-222	ENST00000600320	C5orf38	Q86SI9	138 aa		13.17	□□□□□ -0.3
SHKBP1-222	ENST00000600320	IGHV3OR16-9	A0A0B4J2B5	98 aa		13.16	□□□□□ -0.3
SHKBP1-222	ENST00000600320	PRSS1	P07477	247 aa		13.15	□□□□□ -0.3
SHKBP1-222	ENST00000600320	C15orf56	Q8N910	161 aa		13.15	□□□□□ -0.3
SHKBP1-222	ENST00000600320	HSPB8	Q9UJY1	196 aa		13.15	□□□□□ -0.3
SHKBP1-222	ENST00000600320	FUS	P35637	526 aa	Known RBP eCLIP	13.14	□□□□□ -0.31
SHKBP1-222	ENST00000600320		Q8N814	137 aa		13.14	□□□□□ -0.31
SHKBP1-222	ENST00000600320	COX7A2L	O14548	114 aa		13.13	□□□□□ -0.31
SHKBP1-222	ENST00000600320	IGLV4-69	A0A075B6H9	119 aa		13.12	□□□□□ -0.31
SHKBP1-222	ENST00000600320	TRAV12-1	A0A0B4J245	112 aa		13.12	□□□□□ -0.31
SHKBP1-222	ENST00000600320	DNAH11	Q96DT5	4516 aa		13.12	□□□□□ -0.31
SHKBP1-222	ENST00000600320	TINCR	A0A1B0GVN0	87 aa		13.11	□□□□□ -0.31
SHKBP1-222	ENST00000600320		H0Y8G0	127 aa		13.11	□□□□□ -0.31
SHKBP1-222	ENST00000600320	IGLC3	P0DOY3	106 aa		13.11	□□□□□ -0.31
SHKBP1-222	ENST00000600320	KRTAP10-2	P60368	255 aa		13.11	□□□□□ -0.31
SHKBP1-222	ENST00000600320	HIST3H2BB	Q8N257	126 aa		13.11	□□□□□ -0.31
SHKBP1-222	ENST00000600320	PACRG	Q96M98	296 aa	Predicted RBP	13.11	□□□□□ -0.31
SHKBP1-222	ENST00000600320	GEMIN7	Q9H840	131 aa	Known RBP	13.11	□□□□□ -0.31
SHKBP1-222	ENST00000600320	IGHV1-58	A0A0C4DH39	117 aa		13.1	□□□□□ -0.31
SHKBP1-222	ENST00000600320	EREG	O14944	169 aa		13.1	□□□□□ -0.31
SHKBP1-222	ENST00000600320	S100A6	P06703	90 aa		13.1	□□□□□ -0.31
SHKBP1-222	ENST00000600320	HERVK_113	P63121	156 aa		13.1	□□□□□ -0.31
SHKBP1-222	ENST00000600320	SEC11A	P67812	179 aa		13.1	□□□□□ -0.31
SHKBP1-222	ENST00000600320	HIGD2B	Q4VC39	106 aa		13.1	□□□□□ -0.31
SHKBP1-222	ENST00000600320	CDKN2A-AS1	Q9UH64	79 aa		13.1	□□□□□ -0.31
SHKBP1-222	ENST00000600320	CHTOP	Q9Y3Y2	248 aa	Known RBP	13.1	□□□□□ -0.31
SHKBP1-222	ENST00000600320	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	13.09	□□□□□ -0.31
SHKBP1-222	ENST00000600320		A0A087WZ39	114 aa		13.09	□□□□□ -0.31
SHKBP1-222	ENST00000600320	MAL	P21145	153 aa		13.09	□□□□□ -0.31
SHKBP1-222	ENST00000600320	CFAP161	Q6P656	301 aa		13.09	□□□□□ -0.31
SHKBP1-222	ENST00000600320	SPATA12	Q7Z6I5	190 aa		13.09	□□□□□ -0.31
SHKBP1-222	ENST00000600320	CHAC1	Q9BUX1	264 aa		13.09	□□□□□ -0.31
SHKBP1-222	ENST00000600320	IGLV5-45	A0A087WSX0	123 aa		13.08	□□□□□ -0.32
SHKBP1-222	ENST00000600320	C11orf86	A6NJI1	115 aa		13.08	□□□□□ -0.32
SHKBP1-222	ENST00000600320	SNRPE	P62304	92 aa	Known RBP	13.08	□□□□□ -0.32
SHKBP1-222	ENST00000600320	ODF1	Q14990	250 aa		13.08	□□□□□ -0.32
SHKBP1-222	ENST00000600320	MRPL35	Q9NZE8	188 aa	Known RBP	13.08	□□□□□ -0.32
SHKBP1-222	ENST00000600320		F8VRH5	84 aa		13.07	□□□□□ -0.32
SHKBP1-222	ENST00000600320	C14orf177	Q52M58	125 aa		13.07	□□□□□ -0.32
SHKBP1-222	ENST00000600320	LINC00469	Q8N7U9	141 aa		13.07	□□□□□ -0.32
SHKBP1-222	ENST00000600320	NTN5	Q8WTR8	489 aa	Predicted RBP	13.07	□□□□□ -0.32
SHKBP1-222	ENST00000600320	MAP1LC3C	Q9BXW4	147 aa		13.07	□□□□□ -0.32
SHKBP1-222	ENST00000600320	IGHV3-64	A0A075B6Q5	118 aa		13.06	□□□□□ -0.32
SHKBP1-222	ENST00000600320	GVQW2	A0A096LPI5	108 aa	Predicted RBP	13.06	□□□□□ -0.32
SHKBP1-222	ENST00000600320	hDV102S1	A0JD36	115 aa		13.06	□□□□□ -0.32
SHKBP1-222	ENST00000600320	ZNF22	P17026	224 aa	Predicted RBP	13.06	□□□□□ -0.32
SHKBP1-222	ENST00000600320	LINC00526	Q96FQ7	95 aa		13.06	□□□□□ -0.32
SHKBP1-222	ENST00000600320	C5orf52	A6NGY3	159 aa		13.05	□□□□□ -0.32
SHKBP1-222	ENST00000600320	LINC01561	Q8N1V8	128 aa		13.05	□□□□□ -0.32
SHKBP1-222	ENST00000600320	SYS1-DBNDD2	H3BUS1	97 aa		13.04	□□□□□ -0.32
SHKBP1-222	ENST00000600320	APOM	O95445	188 aa		13.04	□□□□□ -0.32
SHKBP1-222	ENST00000600320	SLPI	P03973	132 aa		13.04	□□□□□ -0.32
SHKBP1-222	ENST00000600320	C3orf79	P0CE67	100 aa		13.04	□□□□□ -0.32
SHKBP1-222	ENST00000600320	ORAOV1	Q8WV07	137 aa		13.04	□□□□□ -0.32
SHKBP1-222	ENST00000600320	HIST1H2BL	Q99880	126 aa		13.04	□□□□□ -0.32
SHKBP1-222	ENST00000600320	PMCHL2	Q9BQD1	86 aa		13.04	□□□□□ -0.32
SHKBP1-222	ENST00000600320	S100A2	P29034	98 aa		13.03	□□□□□ -0.32
SHKBP1-222	ENST00000600320	TMA7	Q9Y2S6	64 aa	Known RBP	13.03	□□□□□ -0.32
SHKBP1-222	ENST00000600320	PKD1	P98161	4303 aa		13.03	□□□□□ -0.32
SHKBP1-222	ENST00000600320	SMIM1	B2RUZ4	78 aa		13.02	□□□□□ -0.33
SHKBP1-222	ENST00000600320	SPAG11B	Q08648	103 aa		13.02	□□□□□ -0.33
SHKBP1-222	ENST00000600320	IGLV5-52	A0A0A0MRZ9	124 aa		13.01	□□□□□ -0.33
SHKBP1-222	ENST00000600320	SPINK8	P0C7L1	97 aa		13.01	□□□□□ -0.33
SHKBP1-222	ENST00000600320	KRTDAP	P60985	99 aa		13.01	□□□□□ -0.33
SHKBP1-222	ENST00000600320	PGPEP1	Q9NXJ5	209 aa		13.01	□□□□□ -0.33
SHKBP1-222	ENST00000600320	KIAA0087	Q14695	138 aa		13	□□□□□ -0.33
SHKBP1-222	ENST00000600320	TMEM170B	Q5T4T1	132 aa		13	□□□□□ -0.33
SHKBP1-222	ENST00000600320	OR10D4P	Q8NGN7	298 aa		13	□□□□□ -0.33
SHKBP1-222	ENST00000600320	ZNF561-AS1	K7EIQ3	104 aa		12.99	□□□□□ -0.33
SHKBP1-222	ENST00000600320	LINC01545	Q5VT33	79 aa		12.99	□□□□□ -0.33
SHKBP1-222	ENST00000600320	PET117	Q6UWS5	81 aa		12.99	□□□□□ -0.33
SHKBP1-222	ENST00000600320	DNAH5	Q8TE73	4624 aa		12.98	□□□□□ -0.33
SHKBP1-222	ENST00000600320		H3BRM9	83 aa		12.98	□□□□□ -0.33
SHKBP1-222	ENST00000600320	CNBP	P62633	177 aa	Known RBP	12.98	□□□□□ -0.33
SHKBP1-222	ENST00000600320	CDPF1	Q6NVV7	123 aa		12.98	□□□□□ -0.33
SHKBP1-222	ENST00000600320	DPM2	O94777	84 aa		12.97	□□□□□ -0.33
SHKBP1-222	ENST00000600320	LINC01620	Q4KN68	170 aa		12.97	□□□□□ -0.33
SHKBP1-222	ENST00000600320	TOMM7	Q9P0U1	55 aa		12.97	□□□□□ -0.33
SHKBP1-222	ENST00000600320	DYNC1H1	Q14204	4646 aa	Known RBP	12.97	□□□□□ -0.33
SHKBP1-222	ENST00000600320	TMEM223	A0PJW6	202 aa		12.96	□□□□□ -0.33
SHKBP1-222	ENST00000600320	IGLV5-39	A0A0G2JS06	123 aa		12.95	□□□□□ -0.34
SHKBP1-222	ENST00000600320	C16orf90	A8MZG2	172 aa		12.95	□□□□□ -0.34
SHKBP1-222	ENST00000600320	IGKC	P01834	107 aa		12.95	□□□□□ -0.34
SHKBP1-222	ENST00000600320	PLN	P26678	52 aa		12.95	□□□□□ -0.34
SHKBP1-222	ENST00000600320		Q6ZRU5	148 aa		12.95	□□□□□ -0.34
SHKBP1-222	ENST00000600320	C2orf48	Q96LS8	159 aa		12.95	□□□□□ -0.34
SHKBP1-222	ENST00000600320	SYCN	Q0VAF6	134 aa		12.94	□□□□□ -0.34
SHKBP1-222	ENST00000600320		Q8IZM0	81 aa		12.94	□□□□□ -0.34
SHKBP1-222	ENST00000600320	CAMK2N2	Q96S95	79 aa		12.94	□□□□□ -0.34
SHKBP1-222	ENST00000600320	HECTD4	Q9Y4D8	3996 aa		12.93	□□□□□ -0.34
SHKBP1-222	ENST00000600320	KRTAP10-1	P60331	282 aa		12.93	□□□□□ -0.34
SHKBP1-222	ENST00000600320	C10orf25	Q5T742	122 aa		12.93	□□□□□ -0.34
SHKBP1-222	ENST00000600320	C2orf82	Q6UX34	121 aa		12.93	□□□□□ -0.34
SHKBP1-222	ENST00000600320	C9orf163	Q8N9P6	203 aa		12.93	□□□□□ -0.34
SHKBP1-222	ENST00000600320	COX7B2	Q8TF08	81 aa		12.93	□□□□□ -0.34
SHKBP1-222	ENST00000600320	CARD19	Q96LW7	228 aa		12.93	□□□□□ -0.34
SHKBP1-222	ENST00000600320	PRSS2	P07478	247 aa		12.92	□□□□□ -0.34
SHKBP1-222	ENST00000600320	GCSH	P23434	173 aa		12.92	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms