RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CIRBP-AS1Q8TBR5 109 aa10.38□□□□□ -0.75
LSM4-206ENST00000600289 TMEM141Q96I45 108 aa10.38□□□□□ -0.75
LSM4-206ENST00000600289 OPRPNQ99935 248 aaPredicted RBP10.38□□□□□ -0.75
LSM4-206ENST00000600289 MRPL18Q9H0U6 180 aaKnown RBP10.38□□□□□ -0.75
LSM4-206ENST00000600289 RNF213Q63HN8 5207 aa10.37□□□□□ -0.75
LSM4-206ENST00000600289 IFITM10A6NMD0 228 aa10.37□□□□□ -0.75
LSM4-206ENST00000600289 IGHV3OR16-9A0A0B4J2B5 98 aa10.36□□□□□ -0.75
LSM4-206ENST00000600289 IGIPA6NJ69 53 aa10.35□□□□□ -0.75
LSM4-206ENST00000600289 MALP21145 153 aa10.35□□□□□ -0.75
LSM4-206ENST00000600289 SERTAD4-AS1Q5TG53 156 aa10.35□□□□□ -0.75
LSM4-206ENST00000600289 AMELXQ99217 191 aa10.35□□□□□ -0.75
LSM4-206ENST00000600289 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.35□□□□□ -0.75
LSM4-206ENST00000600289 TGIF2-C20orf24A0A0A6YYL0 155 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 LINC01549A6NIU2 74 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 ZNF561-AS1K7EIQ3 104 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 APOMO95445 188 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 FABP9Q0Z7S8 132 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 TEX43Q6ZNM6 134 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 LINC00528Q8N1L1 170 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 OR10D4PQ8NGN7 298 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 PRSS3P2Q8NHM4 247 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 TOMM6Q96B49 74 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 TIMM17AQ99595 171 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 PKIGQ9Y2B9 76 aa10.34□□□□□ -0.75
LSM4-206ENST00000600289 PANO1I0J062 215 aa10.33□□□□□ -0.76
LSM4-206ENST00000600289 Q6ZN92 141 aa10.33□□□□□ -0.76
LSM4-206ENST00000600289 LINC00173Q6ZV60 143 aa10.33□□□□□ -0.76
LSM4-206ENST00000600289 FAM19A3Q7Z5A8 133 aa10.33□□□□□ -0.76
LSM4-206ENST00000600289 C2orf48Q96LS8 159 aa10.33□□□□□ -0.76
LSM4-206ENST00000600289 YPEL4Q96NS1 127 aa10.33□□□□□ -0.76
LSM4-206ENST00000600289 C2orf88Q9BSF0 95 aa10.33□□□□□ -0.76
LSM4-206ENST00000600289 LRP1Q07954 4544 aaKnown RBP10.32□□□□□ -0.76
LSM4-206ENST00000600289 UBE2D1P51668 147 aa10.32□□□□□ -0.76
LSM4-206ENST00000600289 PAPPA-AS1Q5QFB9 102 aa10.32□□□□□ -0.76
LSM4-206ENST00000600289 LINC00242Q5T6M2 205 aa10.32□□□□□ -0.76
LSM4-206ENST00000600289 C5orf38Q86SI9 138 aa10.32□□□□□ -0.76
LSM4-206ENST00000600289 SPACA4Q8TDM5 124 aa10.32□□□□□ -0.76
LSM4-206ENST00000600289 CARD19Q96LW7 228 aa10.32□□□□□ -0.76
LSM4-206ENST00000600289 IGLV4-69A0A075B6H9 119 aa10.31□□□□□ -0.76
LSM4-206ENST00000600289 PLA2G1BP04054 148 aaKnown RBP10.31□□□□□ -0.76
LSM4-206ENST00000600289 SYCNQ0VAF6 134 aa10.31□□□□□ -0.76
LSM4-206ENST00000600289 TRAPPC1Q9Y5R8 145 aa10.31□□□□□ -0.76
LSM4-206ENST00000600289 A0A087WZ39 114 aa10.3□□□□□ -0.76
LSM4-206ENST00000600289 F8WDY8 70 aa10.3□□□□□ -0.76
LSM4-206ENST00000600289 COX6A2Q02221 97 aa10.3□□□□□ -0.76
LSM4-206ENST00000600289 ERASQ7Z444 233 aa10.3□□□□□ -0.76
LSM4-206ENST00000600289 LINC01561Q8N1V8 128 aa10.3□□□□□ -0.76
LSM4-206ENST00000600289 LINC00526Q96FQ7 95 aa10.3□□□□□ -0.76
LSM4-206ENST00000600289 VCX2Q9H322 139 aa10.3□□□□□ -0.76
LSM4-206ENST00000600289 KRTAP29-1A8MX34 341 aaPredicted RBP10.29□□□□□ -0.76
LSM4-206ENST00000600289 SPAG11BQ08648 103 aa10.28□□□□□ -0.76
LSM4-206ENST00000600289 RNF151Q2KHN1 245 aa10.28□□□□□ -0.76
LSM4-206ENST00000600289 FA2HQ7L5A8 372 aa10.28□□□□□ -0.76
LSM4-206ENST00000600289 C18orf32Q8TCD1 76 aa10.28□□□□□ -0.76
LSM4-206ENST00000600289 SMCO4Q9NRQ5 59 aa10.28□□□□□ -0.76
LSM4-206ENST00000600289 PLA2G2DQ9UNK4 145 aa10.28□□□□□ -0.76
LSM4-206ENST00000600289 PKHD1L1Q86WI1 4243 aa10.28□□□□□ -0.76
LSM4-206ENST00000600289 CHTF8P0CG12 524 aa10.27□□□□□ -0.77
LSM4-206ENST00000600289 KRTAP10-4P60372 401 aaPredicted RBP10.27□□□□□ -0.77
LSM4-206ENST00000600289 SEC11AP67812 179 aa10.27□□□□□ -0.77
LSM4-206ENST00000600289 Q6ZRU5 148 aa10.27□□□□□ -0.77
LSM4-206ENST00000600289 ORAOV1Q8WV07 137 aa10.27□□□□□ -0.77
LSM4-206ENST00000600289 SCGB3A1Q96QR1 104 aa10.27□□□□□ -0.77
LSM4-206ENST00000600289 CAMK2N2Q96S95 79 aa10.27□□□□□ -0.77
LSM4-206ENST00000600289 PLAC8Q9NZF1 115 aa10.27□□□□□ -0.77
LSM4-206ENST00000600289 LINC00474Q9P2X8 69 aa10.27□□□□□ -0.77
LSM4-206ENST00000600289 A0A087WYN8 130 aa10.26□□□□□ -0.77
LSM4-206ENST00000600289 ZC2HC1BQ5TFG8 222 aa10.26□□□□□ -0.77
LSM4-206ENST00000600289 FAT3Q8TDW7 4589 aa10.25□□□□□ -0.77
LSM4-206ENST00000600289 A0A096LNI7 61 aa10.25□□□□□ -0.77
LSM4-206ENST00000600289 SLC7A5P1Q8MH63 180 aa10.25□□□□□ -0.77
LSM4-206ENST00000600289 URB1-AS1Q96HZ7 61 aa10.25□□□□□ -0.77
LSM4-206ENST00000600289 MRPL35Q9NZE8 188 aaKnown RBP10.25□□□□□ -0.77
LSM4-206ENST00000600289 LOC107984640A0A0U1RRK4 108 aa10.24□□□□□ -0.77
LSM4-206ENST00000600289 HERVK_113P63121 156 aa10.24□□□□□ -0.77
LSM4-206ENST00000600289 KIAA0087Q14695 138 aa10.24□□□□□ -0.77
LSM4-206ENST00000600289 A0A096LNJ9 63 aa10.23□□□□□ -0.77
LSM4-206ENST00000600289 LINC00614P0C842 121 aa10.23□□□□□ -0.77
LSM4-206ENST00000600289 CBLN2Q8IUK8 224 aa10.23□□□□□ -0.77
LSM4-206ENST00000600289 IGKV2-24A0A0C4DH68 120 aa10.22□□□□□ -0.77
LSM4-206ENST00000600289 NDUFA1O15239 70 aa10.22□□□□□ -0.77
LSM4-206ENST00000600289 RAB5BP61020 215 aa10.22□□□□□ -0.77
LSM4-206ENST00000600289 MAJINQ3KP22 176 aa10.22□□□□□ -0.77
LSM4-206ENST00000600289 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.21□□□□□ -0.77
LSM4-206ENST00000600289 HBDP02042 147 aa10.21□□□□□ -0.77
LSM4-206ENST00000600289 PTTG1IPP53801 180 aa10.21□□□□□ -0.77
LSM4-206ENST00000600289 DPH3Q96FX2 82 aa10.21□□□□□ -0.77
LSM4-206ENST00000600289 IGLV5-45A0A087WSX0 123 aa10.2□□□□□ -0.78
LSM4-206ENST00000600289 TINCRA0A1B0GVN0 87 aa10.2□□□□□ -0.78
LSM4-206ENST00000600289 TLX1NBP0CAT3 122 aa10.2□□□□□ -0.78
LSM4-206ENST00000600289 RPL37AP61513 92 aaKnown RBP10.2□□□□□ -0.78
LSM4-206ENST00000600289 PMVKQ15126 192 aa10.2□□□□□ -0.78
LSM4-206ENST00000600289 STPG4Q8N801 248 aa10.2□□□□□ -0.78
LSM4-206ENST00000600289 CST9LQ9H4G1 147 aa10.2□□□□□ -0.78
LSM4-206ENST00000600289 A0A0J9YXV3 536 aa10.19□□□□□ -0.78
LSM4-206ENST00000600289 Q8IZM0 81 aa10.19□□□□□ -0.78
LSM4-206ENST00000600289 GEMIN7Q9H840 131 aaKnown RBP10.19□□□□□ -0.78
LSM4-206ENST00000600289 CDKN2A-AS1Q9UH64 79 aa10.19□□□□□ -0.78
LSM4-206ENST00000600289 LRP2P98164 4655 aa10.18□□□□□ -0.78
LSM4-206ENST00000600289 TRBV30A0A0K0K1B3 111 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms