RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 FOXI1Q12951 378 aa11.05□□□□□ -0.64
USHBP1-210ENST00000600286 KRTAP26-1Q6PEX3 210 aa11.05□□□□□ -0.64
USHBP1-210ENST00000600286 MAPKAPK5-AS1Q8N8E1 139 aa11.05□□□□□ -0.64
USHBP1-210ENST00000600286 GEMIN7Q9H840 131 aaKnown RBP11.05□□□□□ -0.64
USHBP1-210ENST00000600286 USP17L23D6RBM5 183 aa11.04□□□□□ -0.64
USHBP1-210ENST00000600286 UBE2D1P51668 147 aa11.04□□□□□ -0.64
USHBP1-210ENST00000600286 Q8N814 137 aa11.04□□□□□ -0.64
USHBP1-210ENST00000600286 IFI27L1Q96BM0 104 aa11.04□□□□□ -0.64
USHBP1-210ENST00000600286 CST9LQ9H4G1 147 aa11.04□□□□□ -0.64
USHBP1-210ENST00000600286 PGPEP1Q9NXJ5 209 aa11.04□□□□□ -0.64
USHBP1-210ENST00000600286 IGHV1-58A0A0C4DH39 117 aa11.03□□□□□ -0.64
USHBP1-210ENST00000600286 A0A1B0GVY2 172 aa11.03□□□□□ -0.64
USHBP1-210ENST00000600286 HERVK_113P63121 156 aa11.03□□□□□ -0.64
USHBP1-210ENST00000600286 ZC2HC1BQ5TFG8 222 aa11.03□□□□□ -0.64
USHBP1-210ENST00000600286 DNAH11Q96DT5 4516 aa11.03□□□□□ -0.64
USHBP1-210ENST00000600286 S100A6P06703 90 aa11.02□□□□□ -0.65
USHBP1-210ENST00000600286 LINC00242Q5T6M2 205 aa11.02□□□□□ -0.65
USHBP1-210ENST00000600286 LINC00173Q6ZV60 143 aa11.02□□□□□ -0.65
USHBP1-210ENST00000600286 NTN5Q8WTR8 489 aaPredicted RBP11.02□□□□□ -0.65
USHBP1-210ENST00000600286 hDV102S1A0JD36 115 aa11.01□□□□□ -0.65
USHBP1-210ENST00000600286 NUPR1O60356 82 aa11.01□□□□□ -0.65
USHBP1-210ENST00000600286 FABP4P15090 132 aa11.01□□□□□ -0.65
USHBP1-210ENST00000600286 SPATA12Q7Z6I5 190 aa11.01□□□□□ -0.65
USHBP1-210ENST00000600286 C5orf38Q86SI9 138 aa11.01□□□□□ -0.65
USHBP1-210ENST00000600286 LINC00310P59036 64 aa11□□□□□ -0.65
USHBP1-210ENST00000600286 COA6Q5JTJ3 125 aaKnown RBP11□□□□□ -0.65
USHBP1-210ENST00000600286 CDPF1Q6NVV7 123 aa11□□□□□ -0.65
USHBP1-210ENST00000600286 FAM19A3Q7Z5A8 133 aa11□□□□□ -0.65
USHBP1-210ENST00000600286 IGHV3OR16-9A0A0B4J2B5 98 aa10.99□□□□□ -0.65
USHBP1-210ENST00000600286 A0A0J9YXV3 536 aa10.99□□□□□ -0.65
USHBP1-210ENST00000600286 TINCRA0A1B0GVN0 87 aa10.99□□□□□ -0.65
USHBP1-210ENST00000600286 ZNF561-AS1K7EIQ3 104 aa10.99□□□□□ -0.65
USHBP1-210ENST00000600286 PACRGQ96M98 296 aaPredicted RBP10.99□□□□□ -0.65
USHBP1-210ENST00000600286 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.98□□□□□ -0.65
USHBP1-210ENST00000600286 IGLV5-52A0A0A0MRZ9 124 aa10.98□□□□□ -0.65
USHBP1-210ENST00000600286 TRAV12-1A0A0B4J245 112 aa10.98□□□□□ -0.65
USHBP1-210ENST00000600286 WFDC2Q14508 124 aa10.98□□□□□ -0.65
USHBP1-210ENST00000600286 LINC01561Q8N1V8 128 aa10.98□□□□□ -0.65
USHBP1-210ENST00000600286 MAP1LC3CQ9BXW4 147 aa10.98□□□□□ -0.65
USHBP1-210ENST00000600286 CHTOPQ9Y3Y2 248 aaKnown RBP10.98□□□□□ -0.65
USHBP1-210ENST00000600286 A0A087WZ39 114 aa10.97□□□□□ -0.65
USHBP1-210ENST00000600286 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.97□□□□□ -0.65
USHBP1-210ENST00000600286 H3BRM9 83 aa10.97□□□□□ -0.65
USHBP1-210ENST00000600286 COX6A2Q02221 97 aa10.97□□□□□ -0.65
USHBP1-210ENST00000600286 LINC00469Q8N7U9 141 aa10.97□□□□□ -0.65
USHBP1-210ENST00000600286 H0Y8G0 127 aa10.96□□□□□ -0.65
USHBP1-210ENST00000600286 GVQW2A0A096LPI5 108 aaPredicted RBP10.95□□□□□ -0.66
USHBP1-210ENST00000600286 S100A2P29034 98 aa10.95□□□□□ -0.66
USHBP1-210ENST00000600286 HIGD2BQ4VC39 106 aa10.95□□□□□ -0.66
USHBP1-210ENST00000600286 C15orf56Q8N910 161 aa10.95□□□□□ -0.66
USHBP1-210ENST00000600286 OR10D4PQ8NGN7 298 aa10.95□□□□□ -0.66
USHBP1-210ENST00000600286 IGHV3-64A0A075B6Q5 118 aa10.94□□□□□ -0.66
USHBP1-210ENST00000600286 C16orf90A8MZG2 172 aa10.94□□□□□ -0.66
USHBP1-210ENST00000600286 PRSS2P07478 247 aa10.94□□□□□ -0.66
USHBP1-210ENST00000600286 IGLC3P0DOY3 106 aa10.94□□□□□ -0.66
USHBP1-210ENST00000600286 ORAOV1Q8WV07 137 aa10.94□□□□□ -0.66
USHBP1-210ENST00000600286 CHAC1Q9BUX1 264 aa10.94□□□□□ -0.66
USHBP1-210ENST00000600286 CDKN2A-AS1Q9UH64 79 aa10.94□□□□□ -0.66
USHBP1-210ENST00000600286 RYR1P21817 5038 aa10.93□□□□□ -0.66
USHBP1-210ENST00000600286 KRTAP10-2P60368 255 aa10.93□□□□□ -0.66
USHBP1-210ENST00000600286 F8VRH5 84 aa10.92□□□□□ -0.66
USHBP1-210ENST00000600286 F8WDY8 70 aa10.92□□□□□ -0.66
USHBP1-210ENST00000600286 GCSHP23434 173 aa10.92□□□□□ -0.66
USHBP1-210ENST00000600286 SPAG11BQ08648 103 aa10.92□□□□□ -0.66
USHBP1-210ENST00000600286 HSPG2P98160 4391 aa10.92□□□□□ -0.66
USHBP1-210ENST00000600286 TMEM170BQ5T4T1 132 aa10.91□□□□□ -0.66
USHBP1-210ENST00000600286 IGLV5-45A0A087WSX0 123 aa10.9□□□□□ -0.66
USHBP1-210ENST00000600286 CNBPP62633 177 aaKnown RBP10.9□□□□□ -0.66
USHBP1-210ENST00000600286 C6orf226Q5I0X4 101 aa10.9□□□□□ -0.66
USHBP1-210ENST00000600286 C2orf48Q96LS8 159 aa10.9□□□□□ -0.66
USHBP1-210ENST00000600286 CAMK2N2Q96S95 79 aa10.9□□□□□ -0.66
USHBP1-210ENST00000600286 MRPL35Q9NZE8 188 aaKnown RBP10.9□□□□□ -0.66
USHBP1-210ENST00000600286 TOMM7Q9P0U1 55 aa10.9□□□□□ -0.66
USHBP1-210ENST00000600286 PKIGQ9Y2B9 76 aa10.9□□□□□ -0.66
USHBP1-210ENST00000600286 IGLV4-69A0A075B6H9 119 aa10.89□□□□□ -0.67
USHBP1-210ENST00000600286 PLNP26678 52 aa10.89□□□□□ -0.67
USHBP1-210ENST00000600286 SYCNQ0VAF6 134 aa10.89□□□□□ -0.67
USHBP1-210ENST00000600286 SYS1-DBNDD2H3BUS1 97 aa10.88□□□□□ -0.67
USHBP1-210ENST00000600286 CKS1BP61024 79 aa10.88□□□□□ -0.67
USHBP1-210ENST00000600286 ODF1Q14990 250 aa10.88□□□□□ -0.67
USHBP1-210ENST00000600286 PET117Q6UWS5 81 aa10.88□□□□□ -0.67
USHBP1-210ENST00000600286 LRP1BQ9NZR2 4599 aa10.87□□□□□ -0.67
USHBP1-210ENST00000600286 C20orf202A1L168 122 aa10.87□□□□□ -0.67
USHBP1-210ENST00000600286 C11orf86A6NJI1 115 aa10.87□□□□□ -0.67
USHBP1-210ENST00000600286 NDUFA1O15239 70 aa10.87□□□□□ -0.67
USHBP1-210ENST00000600286 DPM2O94777 84 aa10.87□□□□□ -0.67
USHBP1-210ENST00000600286 ZNF22P17026 224 aaPredicted RBP10.87□□□□□ -0.67
USHBP1-210ENST00000600286 FUSP35637 526 aaKnown RBP eCLIP10.87□□□□□ -0.67
USHBP1-210ENST00000600286 KRTDAPP60985 99 aa10.87□□□□□ -0.67
USHBP1-210ENST00000600286 CARD19Q96LW7 228 aa10.87□□□□□ -0.67
USHBP1-210ENST00000600286 SPINK8P0C7L1 97 aa10.86□□□□□ -0.67
USHBP1-210ENST00000600286 AKR1D1P51857 326 aa10.86□□□□□ -0.67
USHBP1-210ENST00000600286 SNRPEP62304 92 aaKnown RBP10.86□□□□□ -0.67
USHBP1-210ENST00000600286 Q8IZM0 81 aa10.86□□□□□ -0.67
USHBP1-210ENST00000600286 HIST3H2BBQ8N257 126 aa10.86□□□□□ -0.67
USHBP1-210ENST00000600286 C9orf163Q8N9P6 203 aa10.86□□□□□ -0.67
USHBP1-210ENST00000600286 LINC00526Q96FQ7 95 aa10.86□□□□□ -0.67
USHBP1-210ENST00000600286 ABCA13Q86UQ4 5058 aa10.85□□□□□ -0.67
USHBP1-210ENST00000600286 SMIM1B2RUZ4 78 aa10.85□□□□□ -0.67
USHBP1-210ENST00000600286 IGKCP01834 107 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms