RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 A8MWL6 223 aa5.18□□□□□ -1.58
SHKBP1-220ENST00000599716 NDUFA5Q16718 116 aa5.18□□□□□ -1.58
SHKBP1-220ENST00000599716 FAM104AQ969W3 186 aa5.18□□□□□ -1.58
SHKBP1-220ENST00000599716 C2orf48Q96LS8 159 aa5.18□□□□□ -1.58
SHKBP1-220ENST00000599716 TMEM191AQ9H0A3 160 aa5.18□□□□□ -1.58
SHKBP1-220ENST00000599716 C6orf48Q9UBA6 75 aa5.18□□□□□ -1.58
SHKBP1-220ENST00000599716 A0A1B0GUT8 65 aa5.17□□□□□ -1.58
SHKBP1-220ENST00000599716 TSPAN13O95857 204 aa5.17□□□□□ -1.58
SHKBP1-220ENST00000599716 FAM231DQ6ZW35 169 aa5.17□□□□□ -1.58
SHKBP1-220ENST00000599716 BORCS7Q96B45 105 aa5.17□□□□□ -1.58
SHKBP1-220ENST00000599716 KRTAP4-9Q9BYQ8 210 aa5.17□□□□□ -1.58
SHKBP1-220ENST00000599716 MUC17Q685J3 4493 aa5.17□□□□□ -1.58
SHKBP1-220ENST00000599716 SYNE2Q8WXH0 6885 aaKnown RBP5.16□□□□□ -1.58
SHKBP1-220ENST00000599716 VCYO14598 125 aa5.16□□□□□ -1.58
SHKBP1-220ENST00000599716 SUMO2P61956 95 aaKnown RBP5.16□□□□□ -1.58
SHKBP1-220ENST00000599716 TSKUQ8WUA8 353 aa5.16□□□□□ -1.58
SHKBP1-220ENST00000599716 M0QXV9 152 aa5.15□□□□□ -1.59
SHKBP1-220ENST00000599716 UBE2D1P51668 147 aa5.15□□□□□ -1.59
SHKBP1-220ENST00000599716 UBE2BP63146 152 aa5.15□□□□□ -1.59
SHKBP1-220ENST00000599716 MRPL51Q4U2R6 128 aaKnown RBP5.15□□□□□ -1.59
SHKBP1-220ENST00000599716 C2orf82Q6UX34 121 aa5.15□□□□□ -1.59
SHKBP1-220ENST00000599716 ALKAL2Q6UX46 152 aa5.15□□□□□ -1.59
SHKBP1-220ENST00000599716 LINC01551Q86U37 167 aa5.15□□□□□ -1.59
SHKBP1-220ENST00000599716 SLC51BQ86UW2 128 aa5.15□□□□□ -1.59
SHKBP1-220ENST00000599716 MRPL35Q9NZE8 188 aaKnown RBP5.15□□□□□ -1.59
SHKBP1-220ENST00000599716 IGLV1-50A0A075B6I6 118 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 IGHV3OR16-9A0A0B4J2B5 98 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 TMEM250H0YL14 139 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 NDUFA1O15239 70 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 TCAPO15273 167 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 RNF151Q2KHN1 245 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 CT83Q5H943 113 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 C9orf129Q5T035 196 aaKnown RBP5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 OR10D4PQ8NGN7 298 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 KIR2DL4Q99706 377 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 SMIM7Q9BQ49 75 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 SMDT1Q9H4I9 107 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 CSDC2Q9Y534 153 aaKnown RBP5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 V9GYV3 84 aa5.14□□□□□ -1.59
SHKBP1-220ENST00000599716 IFITM10A6NMD0 228 aa5.13□□□□□ -1.59
SHKBP1-220ENST00000599716 TAGLN2P37802 199 aaKnown RBP5.13□□□□□ -1.59
SHKBP1-220ENST00000599716 KIAA0087Q14695 138 aa5.13□□□□□ -1.59
SHKBP1-220ENST00000599716 ZC2HC1BQ5TFG8 222 aa5.13□□□□□ -1.59
SHKBP1-220ENST00000599716 LINC00469Q8N7U9 141 aa5.13□□□□□ -1.59
SHKBP1-220ENST00000599716 IMMP2LQ96T52 175 aa5.13□□□□□ -1.59
SHKBP1-220ENST00000599716 hCG_2014768A0A024R1R8 64 aa5.12□□□□□ -1.59
SHKBP1-220ENST00000599716 ZNF727A8MUV8 499 aa5.12□□□□□ -1.59
SHKBP1-220ENST00000599716 TLX1NBP0CAT3 122 aa5.12□□□□□ -1.59
SHKBP1-220ENST00000599716 RIGQ13278 110 aa5.12□□□□□ -1.59
SHKBP1-220ENST00000599716 FAM104BQ5XKR9 115 aa5.12□□□□□ -1.59
SHKBP1-220ENST00000599716 TIMM21Q9BVV7 248 aa5.12□□□□□ -1.59
SHKBP1-220ENST00000599716 EIF5A2Q9GZV4 153 aaKnown RBP5.12□□□□□ -1.59
SHKBP1-220ENST00000599716 OSTCQ9NRP0 149 aa5.12□□□□□ -1.59
SHKBP1-220ENST00000599716 A0A087X002 238 aa5.11□□□□□ -1.59
SHKBP1-220ENST00000599716 TNFRSF6BO95407 300 aa5.11□□□□□ -1.59
SHKBP1-220ENST00000599716 NPYP01303 97 aa5.11□□□□□ -1.59
SHKBP1-220ENST00000599716 SRP19P09132 144 aaKnown RBP5.11□□□□□ -1.59
SHKBP1-220ENST00000599716 RETNLBQ9BQ08 111 aa5.11□□□□□ -1.59
SHKBP1-220ENST00000599716 KRTAP4-2Q9BYR5 136 aa5.11□□□□□ -1.59
SHKBP1-220ENST00000599716 ANAPC11Q9NYG5 84 aa5.11□□□□□ -1.59
SHKBP1-220ENST00000599716 D6R8Y8 96 aa5.1□□□□□ -1.59
SHKBP1-220ENST00000599716 CKS2P33552 79 aa5.1□□□□□ -1.59
SHKBP1-220ENST00000599716 HBBP68871 147 aa5.1□□□□□ -1.59
SHKBP1-220ENST00000599716 MRPL54Q6P161 138 aaKnown RBP5.1□□□□□ -1.59
SHKBP1-220ENST00000599716 TCTE3Q8IZS6 198 aa5.1□□□□□ -1.59
SHKBP1-220ENST00000599716 TMEM18Q96B42 140 aa5.1□□□□□ -1.59
SHKBP1-220ENST00000599716 SMIM2Q9BVW6 85 aa5.1□□□□□ -1.59
SHKBP1-220ENST00000599716 XAGE1AQ9HD64 81 aa5.1□□□□□ -1.59
SHKBP1-220ENST00000599716 C9JQL5 133 aa5.09□□□□□ -1.59
SHKBP1-220ENST00000599716 PPP1R2P9O14990 202 aa5.09□□□□□ -1.59
SHKBP1-220ENST00000599716 BLOC1S1P78537 153 aa5.09□□□□□ -1.59
SHKBP1-220ENST00000599716 SMAGPQ0VAQ4 97 aa5.09□□□□□ -1.59
SHKBP1-220ENST00000599716 ADIRFQ15847 76 aa5.09□□□□□ -1.59
SHKBP1-220ENST00000599716 TMEM241Q24JQ0 296 aa5.09□□□□□ -1.59
SHKBP1-220ENST00000599716 LINC00242Q5T6M2 205 aa5.09□□□□□ -1.59
SHKBP1-220ENST00000599716 TOMM7Q9P0U1 55 aa5.09□□□□□ -1.59
SHKBP1-220ENST00000599716 NAT8BQ9UHF3 227 aa5.09□□□□□ -1.59
SHKBP1-220ENST00000599716 IGLV4-3A0A075B6K6 122 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 TRBV24-1A0A075B6N3 115 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 TGIF2-C20orf24A0A0A6YYL0 155 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 NDUFC2-KCTD14E9PQ53 114 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 ZNF861PO60384 105 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 PPP1R17O96001 155 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 RPL13AP40429 203 aaKnown RBP5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 RPL23P62829 140 aaKnown RBP5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 MRPS36P82909 103 aaKnown RBP5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 FAM74A3Q4VXF1 159 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 C20orf78Q9BR46 151 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 CTDSP1Q9GZU7 261 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 SPANXA1Q9NS26 97 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 C22orf24Q9Y442 160 aa5.08□□□□□ -1.6
SHKBP1-220ENST00000599716 PACRGQ96M98 296 aaPredicted RBP5.07□□□□□ -1.6
SHKBP1-220ENST00000599716 TRBV30A0A0K0K1B3 111 aa5.06□□□□□ -1.6
SHKBP1-220ENST00000599716 LOC389332A0A1B0GUA5 103 aa5.06□□□□□ -1.6
SHKBP1-220ENST00000599716 SMIM27A0A1W2PRY6 76 aa5.06□□□□□ -1.6
SHKBP1-220ENST00000599716 LINC00862A6NCI5 91 aa5.06□□□□□ -1.6
SHKBP1-220ENST00000599716 GAGE10A6NGK3 116 aa5.06□□□□□ -1.6
SHKBP1-220ENST00000599716 F8WDY8 70 aa5.06□□□□□ -1.6
SHKBP1-220ENST00000599716 RPL32P62910 135 aaKnown RBP5.06□□□□□ -1.6
SHKBP1-220ENST00000599716 SRSF3P84103 164 aaKnown RBP5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 1677.3 ms