RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 IFITM10A6NMD0 228 aa6.08□□□□□ -1.44
VRK3-216ENST00000599342 NPYP01303 97 aa6.08□□□□□ -1.44
VRK3-216ENST00000599342 RAB5AP20339 215 aa6.08□□□□□ -1.44
VRK3-216ENST00000599342 C9orf116Q5BN46 136 aaPredicted RBP6.08□□□□□ -1.44
VRK3-216ENST00000599342 ORAOV1Q8WV07 137 aa6.08□□□□□ -1.44
VRK3-216ENST00000599342 A0A1B0GXF2 115 aa6.07□□□□□ -1.44
VRK3-216ENST00000599342 A0A1W2PNN7 141 aa6.07□□□□□ -1.44
VRK3-216ENST00000599342 F8WDY8 70 aa6.07□□□□□ -1.44
VRK3-216ENST00000599342 MT-ND6P03923 174 aa6.07□□□□□ -1.44
VRK3-216ENST00000599342 IFI27P40305 119 aaPredicted RBP6.07□□□□□ -1.44
VRK3-216ENST00000599342 MRPS36P82909 103 aaKnown RBP6.07□□□□□ -1.44
VRK3-216ENST00000599342 RNF151Q2KHN1 245 aa6.07□□□□□ -1.44
VRK3-216ENST00000599342 ATP5L2Q7Z4Y8 100 aa6.07□□□□□ -1.44
VRK3-216ENST00000599342 ORMDL3Q8N138 153 aa6.07□□□□□ -1.44
VRK3-216ENST00000599342 OPRPNQ99935 248 aaPredicted RBP6.07□□□□□ -1.44
VRK3-216ENST00000599342 TGIF2-C20orf24A0A0A6YYL0 155 aa6.06□□□□□ -1.44
VRK3-216ENST00000599342 IGHV3OR16-9A0A0B4J2B5 98 aa6.06□□□□□ -1.44
VRK3-216ENST00000599342 NDUFA1O15239 70 aa6.06□□□□□ -1.44
VRK3-216ENST00000599342 SRSF9Q13242 221 aaKnown RBP eCLIP6.06□□□□□ -1.44
VRK3-216ENST00000599342 PRELID3AQ96N28 172 aa6.06□□□□□ -1.44
VRK3-216ENST00000599342 IMMP2LQ96T52 175 aa6.06□□□□□ -1.44
VRK3-216ENST00000599342 MRPL35Q9NZE8 188 aaKnown RBP6.06□□□□□ -1.44
VRK3-216ENST00000599342 TNXBP22105 4242 aa6.05□□□□□ -1.44
VRK3-216ENST00000599342 TMEM136Q6ZRR5 245 aa6.05□□□□□ -1.44
VRK3-216ENST00000599342 PSORS1C2Q9UIG4 136 aa6.05□□□□□ -1.44
VRK3-216ENST00000599342 UBR4Q5T4S7 5183 aa6.04□□□□□ -1.44
VRK3-216ENST00000599342 C1orf137Q5JT78 98 aa6.04□□□□□ -1.44
VRK3-216ENST00000599342 PHF5AQ7RTV0 110 aaKnown RBP6.04□□□□□ -1.44
VRK3-216ENST00000599342 FAM104AQ969W3 186 aa6.04□□□□□ -1.44
VRK3-216ENST00000599342 MAP1LC3AQ9H492 121 aa6.04□□□□□ -1.44
VRK3-216ENST00000599342 LAMTOR2Q9Y2Q5 125 aa6.04□□□□□ -1.44
VRK3-216ENST00000599342 LOC389332A0A1B0GUA5 103 aa6.03□□□□□ -1.44
VRK3-216ENST00000599342 KRTAP10-8P60410 259 aa6.03□□□□□ -1.44
VRK3-216ENST00000599342 PNRC1Q12796 327 aaPredicted RBP6.03□□□□□ -1.44
VRK3-216ENST00000599342 Q6ZN92 141 aa6.03□□□□□ -1.44
VRK3-216ENST00000599342 TEX43Q6ZNM6 134 aa6.03□□□□□ -1.44
VRK3-216ENST00000599342 TMEM141Q96I45 108 aa6.03□□□□□ -1.44
VRK3-216ENST00000599342 C2orf88Q9BSF0 95 aa6.03□□□□□ -1.44
VRK3-216ENST00000599342 PYGO1Q9Y3Y4 419 aa6.03□□□□□ -1.44
VRK3-216ENST00000599342 IGLV4-3A0A075B6K6 122 aa6.02□□□□□ -1.45
VRK3-216ENST00000599342 A0A087WZ39 114 aa6.02□□□□□ -1.45
VRK3-216ENST00000599342 TLX1NBP0CAT3 122 aa6.02□□□□□ -1.45
VRK3-216ENST00000599342 ODF1Q14990 250 aa6.02□□□□□ -1.45
VRK3-216ENST00000599342 GAGE2EQ4V326 116 aa6.02□□□□□ -1.45
VRK3-216ENST00000599342 C10orf25Q5T742 122 aa6.02□□□□□ -1.45
VRK3-216ENST00000599342 UNQ6190/PRO20217Q6UXQ8 127 aa6.02□□□□□ -1.45
VRK3-216ENST00000599342 C6orf48Q9UBA6 75 aa6.02□□□□□ -1.45
VRK3-216ENST00000599342 GAGE2DQ9UEU5 116 aa6.02□□□□□ -1.45
VRK3-216ENST00000599342 CYSLTR1Q9Y271 337 aa6.02□□□□□ -1.45
VRK3-216ENST00000599342 MT-ND4LP03901 98 aa6.01□□□□□ -1.45
VRK3-216ENST00000599342 LINC00242Q5T6M2 205 aa6.01□□□□□ -1.45
VRK3-216ENST00000599342 FAM19A5Q7Z5A7 132 aaPredicted RBP6.01□□□□□ -1.45
VRK3-216ENST00000599342 ANAPC16Q96DE5 110 aa6.01□□□□□ -1.45
VRK3-216ENST00000599342 PACRGQ96M98 296 aaPredicted RBP6.01□□□□□ -1.45
VRK3-216ENST00000599342 TRBV30A0A0K0K1B3 111 aa6□□□□□ -1.45
VRK3-216ENST00000599342 FAM168BA1KXE4 195 aa6□□□□□ -1.45
VRK3-216ENST00000599342 PRSS47A8MTI9 375 aa6□□□□□ -1.45
VRK3-216ENST00000599342 UBE2D1P51668 147 aa6□□□□□ -1.45
VRK3-216ENST00000599342 RAB14P61106 215 aa6□□□□□ -1.45
VRK3-216ENST00000599342 ORMDL2Q53FV1 153 aa6□□□□□ -1.45
VRK3-216ENST00000599342 C2orf66Q6UXQ4 117 aa6□□□□□ -1.45
VRK3-216ENST00000599342 Q8N8P6 123 aa6□□□□□ -1.45
VRK3-216ENST00000599342 DIRC1Q969H9 104 aa6□□□□□ -1.45
VRK3-216ENST00000599342 NDUFC2-KCTD14E9PQ53 114 aa5.99□□□□□ -1.45
VRK3-216ENST00000599342 M0QXV9 152 aa5.99□□□□□ -1.45
VRK3-216ENST00000599342 IGLV7-43P04211 117 aa5.99□□□□□ -1.45
VRK3-216ENST00000599342 PRSS2P07478 247 aa5.99□□□□□ -1.45
VRK3-216ENST00000599342 UBE2BP63146 152 aa5.99□□□□□ -1.45
VRK3-216ENST00000599342 KIAA0087Q14695 138 aa5.99□□□□□ -1.45
VRK3-216ENST00000599342 C2orf82Q6UX34 121 aa5.99□□□□□ -1.45
VRK3-216ENST00000599342 LINC01561Q8N1V8 128 aa5.99□□□□□ -1.45
VRK3-216ENST00000599342 VCX2Q9H322 139 aa5.99□□□□□ -1.45
VRK3-216ENST00000599342 K7EMI3 77 aa5.98□□□□□ -1.45
VRK3-216ENST00000599342 NPSP0C0P6 89 aa5.98□□□□□ -1.45
VRK3-216ENST00000599342 CTDSP1Q9GZU7 261 aa5.98□□□□□ -1.45
VRK3-216ENST00000599342 NXT2Q9NPJ8 142 aaKnown RBP5.98□□□□□ -1.45
VRK3-216ENST00000599342 TOMM7Q9P0U1 55 aa5.98□□□□□ -1.45
VRK3-216ENST00000599342 G0S2P27469 103 aa5.97□□□□□ -1.45
VRK3-216ENST00000599342 CKS1BP61024 79 aa5.97□□□□□ -1.45
VRK3-216ENST00000599342 PAPPA-AS1Q5QFB9 102 aa5.97□□□□□ -1.45
VRK3-216ENST00000599342 ZC2HC1BQ5TFG8 222 aa5.97□□□□□ -1.45
VRK3-216ENST00000599342 LINC00173Q6ZV60 143 aa5.97□□□□□ -1.45
VRK3-216ENST00000599342 AMELXQ99217 191 aa5.97□□□□□ -1.45
VRK3-216ENST00000599342 H0Y9J4 135 aa5.96□□□□□ -1.46
VRK3-216ENST00000599342 HERVK_113P63121 156 aa5.96□□□□□ -1.46
VRK3-216ENST00000599342 SEC11AP67812 179 aa5.96□□□□□ -1.46
VRK3-216ENST00000599342 C6orf226Q5I0X4 101 aa5.96□□□□□ -1.46
VRK3-216ENST00000599342 Q8IZM0 81 aa5.96□□□□□ -1.46
VRK3-216ENST00000599342 LRP2P98164 4655 aa5.95□□□□□ -1.46
VRK3-216ENST00000599342 IGIPA6NJ69 53 aa5.95□□□□□ -1.46
VRK3-216ENST00000599342 C9orf129Q5T035 196 aaKnown RBP5.95□□□□□ -1.46
VRK3-216ENST00000599342 KRTAP11-1Q8IUC1 163 aa5.95□□□□□ -1.46
VRK3-216ENST00000599342 PRR26Q8N8Z3 221 aa5.95□□□□□ -1.46
VRK3-216ENST00000599342 ALKBH7Q9BT30 221 aaPredicted RBP5.95□□□□□ -1.46
VRK3-216ENST00000599342 GEMIN7Q9H840 131 aaKnown RBP5.95□□□□□ -1.46
VRK3-216ENST00000599342 FAM19A3Q7Z5A8 133 aa5.94□□□□□ -1.46
VRK3-216ENST00000599342 KRTAP7-1Q8IUC3 87 aa5.94□□□□□ -1.46
VRK3-216ENST00000599342 TIMM17AQ99595 171 aa5.94□□□□□ -1.46
VRK3-216ENST00000599342 IGLV1-50A0A075B6I6 118 aa5.93□□□□□ -1.46
VRK3-216ENST00000599342 CXCL5P42830 114 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms