RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 G0S2P27469 103 aa8.88□□□□□ -0.99
UPF1-205ENST00000598209 TEX43Q6ZNM6 134 aa8.88□□□□□ -0.99
UPF1-205ENST00000598209 TRAPPC1Q9Y5R8 145 aa8.88□□□□□ -0.99
UPF1-205ENST00000598209 IGHV3OR16-9A0A0B4J2B5 98 aa8.87□□□□□ -0.99
UPF1-205ENST00000598209 IGIPA6NJ69 53 aa8.87□□□□□ -0.99
UPF1-205ENST00000598209 APOMO95445 188 aa8.87□□□□□ -0.99
UPF1-205ENST00000598209 Q6ZN92 141 aa8.87□□□□□ -0.99
UPF1-205ENST00000598209 LINC00528Q8N1L1 170 aa8.87□□□□□ -0.99
UPF1-205ENST00000598209 LINC01546A6NGU7 62 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 NPSP0C0P6 89 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 COX6A2Q02221 97 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 ZC2HC1BQ5TFG8 222 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 LINC00173Q6ZV60 143 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 SLC7A5P1Q8MH63 180 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 TOMM6Q96B49 74 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 CARD19Q96LW7 228 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 AMELXQ99217 191 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 C2orf88Q9BSF0 95 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 VCX2Q9H322 139 aa8.86□□□□□ -0.99
UPF1-205ENST00000598209 VPS13BQ7Z7G8 4022 aa8.85□□□□□ -0.99
UPF1-205ENST00000598209 IGLV4-69A0A075B6H9 119 aa8.85□□□□□ -0.99
UPF1-205ENST00000598209 CHTF8P0CG12 524 aa8.85□□□□□ -0.99
UPF1-205ENST00000598209 UBE2D1P51668 147 aa8.85□□□□□ -0.99
UPF1-205ENST00000598209 SYCNQ0VAF6 134 aa8.85□□□□□ -0.99
UPF1-205ENST00000598209 CIRBPQ14011 172 aaKnown RBP8.85□□□□□ -0.99
UPF1-205ENST00000598209 LINC00242Q5T6M2 205 aa8.85□□□□□ -0.99
UPF1-205ENST00000598209 FA2HQ7L5A8 372 aa8.85□□□□□ -0.99
UPF1-205ENST00000598209 TIMM17AQ99595 171 aa8.85□□□□□ -0.99
UPF1-205ENST00000598209 SMCO4Q9NRQ5 59 aa8.85□□□□□ -0.99
UPF1-205ENST00000598209 SPAG11BQ08648 103 aa8.84□□□□□ -0.99
UPF1-205ENST00000598209 PAPPA-AS1Q5QFB9 102 aa8.84□□□□□ -0.99
UPF1-205ENST00000598209 YPEL4Q96NS1 127 aa8.84□□□□□ -0.99
UPF1-205ENST00000598209 PLA2G1BP04054 148 aaKnown RBP8.83□□□□□ -1
UPF1-205ENST00000598209 INAFM2P0DMQ5 153 aa8.83□□□□□ -1
UPF1-205ENST00000598209 ERASQ7Z444 233 aa8.83□□□□□ -1
UPF1-205ENST00000598209 OR10D4PQ8NGN7 298 aa8.83□□□□□ -1
UPF1-205ENST00000598209 SPACA4Q8TDM5 124 aa8.83□□□□□ -1
UPF1-205ENST00000598209 ORAOV1Q8WV07 137 aa8.83□□□□□ -1
UPF1-205ENST00000598209 DPH3Q96FX2 82 aa8.83□□□□□ -1
UPF1-205ENST00000598209 SCGB3A1Q96QR1 104 aa8.83□□□□□ -1
UPF1-205ENST00000598209 CAMK2N2Q96S95 79 aa8.83□□□□□ -1
UPF1-205ENST00000598209 A0A087WZ39 114 aa8.82□□□□□ -1
UPF1-205ENST00000598209 LINC01549A6NIU2 74 aa8.82□□□□□ -1
UPF1-205ENST00000598209 Q6ZRU5 148 aa8.82□□□□□ -1
UPF1-205ENST00000598209 CBLN2Q8IUK8 224 aa8.82□□□□□ -1
UPF1-205ENST00000598209 C18orf32Q8TCD1 76 aa8.82□□□□□ -1
UPF1-205ENST00000598209 C2orf48Q96LS8 159 aa8.82□□□□□ -1
UPF1-205ENST00000598209 PKIGQ9Y2B9 76 aa8.82□□□□□ -1
UPF1-205ENST00000598209 A0A087WYN8 130 aa8.81□□□□□ -1
UPF1-205ENST00000598209 IGKV2-24A0A0C4DH68 120 aa8.81□□□□□ -1
UPF1-205ENST00000598209 A0A096LNI7 61 aa8.8□□□□□ -1
UPF1-205ENST00000598209 MAJINQ3KP22 176 aa8.8□□□□□ -1
UPF1-205ENST00000598209 FAM19A3Q7Z5A8 133 aa8.8□□□□□ -1
UPF1-205ENST00000598209 URB1-AS1Q96HZ7 61 aa8.8□□□□□ -1
UPF1-205ENST00000598209 LINC00614P0C842 121 aa8.79□□□□□ -1
UPF1-205ENST00000598209 LINC01561Q8N1V8 128 aa8.79□□□□□ -1
UPF1-205ENST00000598209 LOC107984640A0A0U1RRK4 108 aa8.78□□□□□ -1
UPF1-205ENST00000598209 F8WDY8 70 aa8.78□□□□□ -1
UPF1-205ENST00000598209 SEC11AP67812 179 aa8.78□□□□□ -1
UPF1-205ENST00000598209 PLAC8Q9NZF1 115 aa8.78□□□□□ -1
UPF1-205ENST00000598209 A0A096LNJ9 63 aa8.77□□□□□ -1.01
UPF1-205ENST00000598209 A0A0J9YXV3 536 aa8.77□□□□□ -1.01
UPF1-205ENST00000598209 NDUFA1O15239 70 aa8.77□□□□□ -1.01
UPF1-205ENST00000598209 HERVK_113P63121 156 aa8.77□□□□□ -1.01
UPF1-205ENST00000598209 KIAA0087Q14695 138 aa8.77□□□□□ -1.01
UPF1-205ENST00000598209 STPG4Q8N801 248 aa8.77□□□□□ -1.01
UPF1-205ENST00000598209 GEMIN7Q9H840 131 aaKnown RBP8.77□□□□□ -1.01
UPF1-205ENST00000598209 LINC00474Q9P2X8 69 aa8.77□□□□□ -1.01
UPF1-205ENST00000598209 PTTG1IPP53801 180 aa8.76□□□□□ -1.01
UPF1-205ENST00000598209 KRTAP10-4P60372 401 aaPredicted RBP8.76□□□□□ -1.01
UPF1-205ENST00000598209 RAB5BP61020 215 aa8.76□□□□□ -1.01
UPF1-205ENST00000598209 RPL37AP61513 92 aaKnown RBP8.76□□□□□ -1.01
UPF1-205ENST00000598209 GAGE2BQ13066 116 aa8.76□□□□□ -1.01
UPF1-205ENST00000598209 PMCHL1Q16048 86 aa8.76□□□□□ -1.01
UPF1-205ENST00000598209 RNF151Q2KHN1 245 aa8.76□□□□□ -1.01
UPF1-205ENST00000598209 CST9LQ9H4G1 147 aa8.76□□□□□ -1.01
UPF1-205ENST00000598209 MRPL35Q9NZE8 188 aaKnown RBP8.76□□□□□ -1.01
UPF1-205ENST00000598209 SRRM2Q9UQ35 2752 aaKnown RBP8.76□□□□□ -1.01
UPF1-205ENST00000598209 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.75□□□□□ -1.01
UPF1-205ENST00000598209 HBDP02042 147 aa8.75□□□□□ -1.01
UPF1-205ENST00000598209 PMVKQ15126 192 aa8.75□□□□□ -1.01
UPF1-205ENST00000598209 C10orf25Q5T742 122 aa8.75□□□□□ -1.01
UPF1-205ENST00000598209 UNQ6190/PRO20217Q6UXQ8 127 aa8.75□□□□□ -1.01
UPF1-205ENST00000598209 CDKN2A-AS1Q9UH64 79 aa8.75□□□□□ -1.01
UPF1-205ENST00000598209 FLG2Q5D862 2391 aaPredicted RBP8.75□□□□□ -1.01
UPF1-205ENST00000598209 TINCRA0A1B0GVN0 87 aa8.74□□□□□ -1.01
UPF1-205ENST00000598209 RPL18AQ02543 176 aaKnown RBP8.74□□□□□ -1.01
UPF1-205ENST00000598209 C6orf48Q9UBA6 75 aa8.74□□□□□ -1.01
UPF1-205ENST00000598209 PRSS2P07478 247 aa8.73□□□□□ -1.01
UPF1-205ENST00000598209 C2orf82Q6UX34 121 aa8.73□□□□□ -1.01
UPF1-205ENST00000598209 LINC00469Q8N7U9 141 aa8.73□□□□□ -1.01
UPF1-205ENST00000598209 PACRGQ96M98 296 aaPredicted RBP8.73□□□□□ -1.01
UPF1-205ENST00000598209 TOMM7Q9P0U1 55 aa8.73□□□□□ -1.01
UPF1-205ENST00000598209 TRGC2P03986 189 aa8.72□□□□□ -1.01
UPF1-205ENST00000598209 NDUFA6P56556 154 aa8.72□□□□□ -1.01
UPF1-205ENST00000598209 PDZD11Q5EBL8 140 aa8.72□□□□□ -1.01
UPF1-205ENST00000598209 IGLV5-45A0A087WSX0 123 aa8.71□□□□□ -1.02
UPF1-205ENST00000598209 TRBV30A0A0K0K1B3 111 aa8.71□□□□□ -1.02
UPF1-205ENST00000598209 Q8IZM0 81 aa8.71□□□□□ -1.02
UPF1-205ENST00000598209 C7orf33Q8WU49 177 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms