RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 XCL1P47992 114 aa10.3□□□□□ -0.76
TRIM28-209ENST00000597423 hDV102S1A0JD36 115 aa10.29□□□□□ -0.76
TRIM28-209ENST00000597423 COX6A2Q02221 97 aa10.29□□□□□ -0.76
TRIM28-209ENST00000597423 LINC01561Q8N1V8 128 aa10.29□□□□□ -0.76
TRIM28-209ENST00000597423 STPG4Q8N801 248 aa10.29□□□□□ -0.76
TRIM28-209ENST00000597423 C1orf43Q9BWL3 253 aa10.29□□□□□ -0.76
TRIM28-209ENST00000597423 CDKN2A-AS1Q9UH64 79 aa10.29□□□□□ -0.76
TRIM28-209ENST00000597423 COX11Q9Y6N1 276 aa10.29□□□□□ -0.76
TRIM28-209ENST00000597423 DNAH7Q8WXX0 4024 aa10.29□□□□□ -0.76
TRIM28-209ENST00000597423 DYNC2H1Q8NCM8 4307 aaKnown RBP10.28□□□□□ -0.76
TRIM28-209ENST00000597423 IGLV10-54A0A075B6I4 117 aa10.28□□□□□ -0.76
TRIM28-209ENST00000597423 TMEM223A0PJW6 202 aa10.28□□□□□ -0.76
TRIM28-209ENST00000597423 SPATA45Q537H7 98 aa10.28□□□□□ -0.76
TRIM28-209ENST00000597423 PAM16Q9Y3D7 125 aa10.28□□□□□ -0.76
TRIM28-209ENST00000597423 TGP01266 2768 aa10.28□□□□□ -0.76
TRIM28-209ENST00000597423 A0A087WZ39 114 aa10.27□□□□□ -0.77
TRIM28-209ENST00000597423 IGHV3OR16-9A0A0B4J2B5 98 aa10.27□□□□□ -0.77
TRIM28-209ENST00000597423 GAGE12HA6NDE8 117 aa10.27□□□□□ -0.77
TRIM28-209ENST00000597423 COX7A2LO14548 114 aa10.27□□□□□ -0.77
TRIM28-209ENST00000597423 TM2D2Q9BX73 214 aa10.27□□□□□ -0.77
TRIM28-209ENST00000597423 IGKV2D-24A0A075B6R9 120 aa10.26□□□□□ -0.77
TRIM28-209ENST00000597423 E9PLD3 99 aa10.26□□□□□ -0.77
TRIM28-209ENST00000597423 APOMO95445 188 aa10.26□□□□□ -0.77
TRIM28-209ENST00000597423 MALP21145 153 aa10.26□□□□□ -0.77
TRIM28-209ENST00000597423 PLEKHB2Q96CS7 222 aa10.26□□□□□ -0.77
TRIM28-209ENST00000597423 IGHV1-58A0A0C4DH39 117 aa10.25□□□□□ -0.77
TRIM28-209ENST00000597423 NBDYA0A0U1RRE5 68 aa10.25□□□□□ -0.77
TRIM28-209ENST00000597423 MAJINQ3KP22 176 aa10.25□□□□□ -0.77
TRIM28-209ENST00000597423 C5orf38Q86SI9 138 aa10.25□□□□□ -0.77
TRIM28-209ENST00000597423 Q9HAA7 133 aa10.25□□□□□ -0.77
TRIM28-209ENST00000597423 LEPROTO15243 131 aa10.24□□□□□ -0.77
TRIM28-209ENST00000597423 LY6G6CO95867 125 aa10.24□□□□□ -0.77
TRIM28-209ENST00000597423 FOXI1Q12951 378 aa10.24□□□□□ -0.77
TRIM28-209ENST00000597423 CDPF1Q6NVV7 123 aa10.24□□□□□ -0.77
TRIM28-209ENST00000597423 SPINK8P0C7L1 97 aa10.23□□□□□ -0.77
TRIM28-209ENST00000597423 NMUP48645 174 aa10.23□□□□□ -0.77
TRIM28-209ENST00000597423 ANKRD39Q53RE8 183 aa10.23□□□□□ -0.77
TRIM28-209ENST00000597423 CFAP161Q6P656 301 aa10.23□□□□□ -0.77
TRIM28-209ENST00000597423 LGALS3P17931 250 aaKnown RBP10.22□□□□□ -0.77
TRIM28-209ENST00000597423 SMIM1B2RUZ4 78 aa10.21□□□□□ -0.77
TRIM28-209ENST00000597423 PRSS2P07478 247 aa10.21□□□□□ -0.77
TRIM28-209ENST00000597423 LINC00476Q8WZB0 136 aa10.21□□□□□ -0.77
TRIM28-209ENST00000597423 IGHV3-64A0A075B6Q5 118 aa10.2□□□□□ -0.78
TRIM28-209ENST00000597423 IGLV5-39A0A0G2JS06 123 aa10.2□□□□□ -0.78
TRIM28-209ENST00000597423 TSTD3H0UI37 97 aa10.2□□□□□ -0.78
TRIM28-209ENST00000597423 J3QQQ9 107 aa10.2□□□□□ -0.78
TRIM28-209ENST00000597423 COX8AP10176 69 aa10.19□□□□□ -0.78
TRIM28-209ENST00000597423 C6orf226Q5I0X4 101 aa10.19□□□□□ -0.78
TRIM28-209ENST00000597423 SFTA2Q6UW10 78 aa10.19□□□□□ -0.78
TRIM28-209ENST00000597423 CSMD3Q7Z407 3707 aa10.18□□□□□ -0.78
TRIM28-209ENST00000597423 PSCAO43653 123 aa10.18□□□□□ -0.78
TRIM28-209ENST00000597423 KRTAP26-1Q6PEX3 210 aa10.18□□□□□ -0.78
TRIM28-209ENST00000597423 SLC25A34Q6PIV7 304 aa10.18□□□□□ -0.78
TRIM28-209ENST00000597423 COX7B2Q8TF08 81 aa10.18□□□□□ -0.78
TRIM28-209ENST00000597423 C14orf144Q96I85 54 aa10.18□□□□□ -0.78
TRIM28-209ENST00000597423 TOMM7Q9P0U1 55 aa10.18□□□□□ -0.78
TRIM28-209ENST00000597423 UQCR10Q9UDW1 63 aa10.18□□□□□ -0.78
TRIM28-209ENST00000597423 IGKV2D-26A0A0A0MRZ7 120 aa10.17□□□□□ -0.78
TRIM28-209ENST00000597423 MYMXA0A1B0GTQ4 84 aa10.17□□□□□ -0.78
TRIM28-209ENST00000597423 DLEU1O43261 78 aa10.17□□□□□ -0.78
TRIM28-209ENST00000597423 ORAOV1Q8WV07 137 aa10.17□□□□□ -0.78
TRIM28-209ENST00000597423 TENM2Q9NT68 2774 aa10.16□□□□□ -0.78
TRIM28-209ENST00000597423 ZNF815PA8K554 130 aa10.16□□□□□ -0.78
TRIM28-209ENST00000597423 M0R2N4 97 aa10.16□□□□□ -0.78
TRIM28-209ENST00000597423 Q8IZM0 81 aa10.16□□□□□ -0.78
TRIM28-209ENST00000597423 KRTAP1-5Q9BYS1 174 aa10.16□□□□□ -0.78
TRIM28-209ENST00000597423 ZNF561-AS1K7EIQ3 104 aa10.15□□□□□ -0.78
TRIM28-209ENST00000597423 CXCL5P42830 114 aa10.15□□□□□ -0.78
TRIM28-209ENST00000597423 CKS1BP61024 79 aa10.15□□□□□ -0.78
TRIM28-209ENST00000597423 PCP2Q8IVA1 136 aa10.15□□□□□ -0.78
TRIM28-209ENST00000597423 BOD1L2Q8IYS8 172 aa10.15□□□□□ -0.78
TRIM28-209ENST00000597423 MIEN1Q9BRT3 115 aa10.15□□□□□ -0.78
TRIM28-209ENST00000597423 PRO1933Q9H354 126 aa10.15□□□□□ -0.78
TRIM28-209ENST00000597423 NDUFA12Q9UI09 145 aa10.15□□□□□ -0.78
TRIM28-209ENST00000597423 LINC00587B1AMM8 73 aa10.14□□□□□ -0.79
TRIM28-209ENST00000597423 F8WDY8 70 aa10.14□□□□□ -0.79
TRIM28-209ENST00000597423 HERV-K104P63124 156 aa10.14□□□□□ -0.79
TRIM28-209ENST00000597423 Q6ZR54 194 aa10.14□□□□□ -0.79
TRIM28-209ENST00000597423 STARD9Q9P2P6 4700 aa10.14□□□□□ -0.79
TRIM28-209ENST00000597423 PLECQ15149 4684 aaKnown RBP10.14□□□□□ -0.79
TRIM28-209ENST00000597423 NDUFA1O15239 70 aa10.13□□□□□ -0.79
TRIM28-209ENST00000597423 SPAG11BQ08648 103 aa10.13□□□□□ -0.79
TRIM28-209ENST00000597423 SCGB1D4Q6XE38 83 aa10.13□□□□□ -0.79
TRIM28-209ENST00000597423 C6orf223Q8N319 242 aa10.13□□□□□ -0.79
TRIM28-209ENST00000597423 MAPKAPK5-AS1Q8N8E1 139 aa10.13□□□□□ -0.79
TRIM28-209ENST00000597423 TSPEAR-AS2P59090 65 aa10.12□□□□□ -0.79
TRIM28-209ENST00000597423 CIRBPQ14011 172 aaKnown RBP10.12□□□□□ -0.79
TRIM28-209ENST00000597423 C14orf177Q52M58 125 aa10.12□□□□□ -0.79
TRIM28-209ENST00000597423 C1orf134Q5TEV5 83 aa10.12□□□□□ -0.79
TRIM28-209ENST00000597423 USP17L23D6RBM5 183 aa10.1□□□□□ -0.79
TRIM28-209ENST00000597423 KIAA0087Q14695 138 aa10.1□□□□□ -0.79
TRIM28-209ENST00000597423 C2orf48Q96LS8 159 aa10.1□□□□□ -0.79
TRIM28-209ENST00000597423 GVQW2A0A096LPI5 108 aaPredicted RBP10.09□□□□□ -0.79
TRIM28-209ENST00000597423 HNRNPA3P51991 378 aaKnown RBP10.09□□□□□ -0.79
TRIM28-209ENST00000597423 ZNF625Q96I27 306 aaPredicted RBP10.09□□□□□ -0.79
TRIM28-209ENST00000597423 TTTY13Q9BZ97 58 aa10.09□□□□□ -0.79
TRIM28-209ENST00000597423 C15orf56Q8N910 161 aa10.08□□□□□ -0.8
TRIM28-209ENST00000597423 NTN5Q8WTR8 489 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-209ENST00000597423 CAMK2N2Q96S95 79 aa10.08□□□□□ -0.8
TRIM28-209ENST00000597423 HIGD1BQ9P298 99 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms