RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 C2orf66Q6UXQ4 117 aa10.32□□□□□ -0.76
TRIM28-206ENST00000595974 C5orf38Q86SI9 138 aa10.32□□□□□ -0.76
TRIM28-206ENST00000595974 PRSS3P2Q8NHM4 247 aa10.32□□□□□ -0.76
TRIM28-206ENST00000595974 LINC00526Q96FQ7 95 aa10.32□□□□□ -0.76
TRIM28-206ENST00000595974 TMEM141Q96I45 108 aa10.32□□□□□ -0.76
TRIM28-206ENST00000595974 GNB1LQ9BYB4 327 aa10.32□□□□□ -0.76
TRIM28-206ENST00000595974 A0A087WYN8 130 aa10.31□□□□□ -0.76
TRIM28-206ENST00000595974 KIAA1644Q3SXP7 199 aa10.31□□□□□ -0.76
TRIM28-206ENST00000595974 RPS10P5Q9NQ39 176 aa10.31□□□□□ -0.76
TRIM28-206ENST00000595974 IGLV4-69A0A075B6H9 119 aa10.3□□□□□ -0.76
TRIM28-206ENST00000595974 IGHV3OR16-9A0A0B4J2B5 98 aa10.3□□□□□ -0.76
TRIM28-206ENST00000595974 MT-ND6P03923 174 aa10.3□□□□□ -0.76
TRIM28-206ENST00000595974 NPSP0C0P6 89 aa10.3□□□□□ -0.76
TRIM28-206ENST00000595974 RPL37AP61513 92 aaKnown RBP10.3□□□□□ -0.76
TRIM28-206ENST00000595974 OR10D4PQ8NGN7 298 aa10.3□□□□□ -0.76
TRIM28-206ENST00000595974 DPH3Q96FX2 82 aa10.3□□□□□ -0.76
TRIM28-206ENST00000595974 C2orf48Q96LS8 159 aa10.3□□□□□ -0.76
TRIM28-206ENST00000595974 G0S2P27469 103 aa10.29□□□□□ -0.76
TRIM28-206ENST00000595974 SPAG11BQ08648 103 aa10.29□□□□□ -0.76
TRIM28-206ENST00000595974 Q6ZN92 141 aa10.29□□□□□ -0.76
TRIM28-206ENST00000595974 TEX43Q6ZNM6 134 aa10.29□□□□□ -0.76
TRIM28-206ENST00000595974 PLAC8Q9NZF1 115 aa10.29□□□□□ -0.76
TRIM28-206ENST00000595974 LINC00474Q9P2X8 69 aa10.29□□□□□ -0.76
TRIM28-206ENST00000595974 A0A096LNI7 61 aa10.28□□□□□ -0.76
TRIM28-206ENST00000595974 TGIF2-C20orf24A0A0A6YYL0 155 aa10.28□□□□□ -0.76
TRIM28-206ENST00000595974 IGKV2-24A0A0C4DH68 120 aa10.28□□□□□ -0.76
TRIM28-206ENST00000595974 MAJINQ3KP22 176 aa10.28□□□□□ -0.76
TRIM28-206ENST00000595974 CAMK2N2Q96S95 79 aa10.28□□□□□ -0.76
TRIM28-206ENST00000595974 C2orf88Q9BSF0 95 aa10.28□□□□□ -0.76
TRIM28-206ENST00000595974 NDUFA5Q16718 116 aa10.27□□□□□ -0.77
TRIM28-206ENST00000595974 Q6ZRU5 148 aa10.27□□□□□ -0.77
TRIM28-206ENST00000595974 ORAOV1Q8WV07 137 aa10.27□□□□□ -0.77
TRIM28-206ENST00000595974 IGIPA6NJ69 53 aa10.26□□□□□ -0.77
TRIM28-206ENST00000595974 LINC00242Q5T6M2 205 aa10.26□□□□□ -0.77
TRIM28-206ENST00000595974 AMELXQ99217 191 aa10.26□□□□□ -0.77
TRIM28-206ENST00000595974 ALKBH7Q9BT30 221 aaPredicted RBP10.26□□□□□ -0.77
TRIM28-206ENST00000595974 A0A087WZ39 114 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 LOC107984640A0A0U1RRK4 108 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 F8WDY8 70 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 APOC3P02656 99 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 UBE2D1P51668 147 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 PAPPA-AS1Q5QFB9 102 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 LINC00173Q6ZV60 143 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 SVBPQ8N300 66 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 TOMM6Q96B49 74 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 TIMM17AQ99595 171 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 MRPL18Q9H0U6 180 aaKnown RBP10.25□□□□□ -0.77
TRIM28-206ENST00000595974 VCX2Q9H322 139 aa10.25□□□□□ -0.77
TRIM28-206ENST00000595974 SNAPINO95295 136 aa10.24□□□□□ -0.77
TRIM28-206ENST00000595974 STPG4Q8N801 248 aa10.24□□□□□ -0.77
TRIM28-206ENST00000595974 PKHD1L1Q86WI1 4243 aa10.24□□□□□ -0.77
TRIM28-206ENST00000595974 LINC01546A6NGU7 62 aa10.23□□□□□ -0.77
TRIM28-206ENST00000595974 LINC01549A6NIU2 74 aa10.23□□□□□ -0.77
TRIM28-206ENST00000595974 FABP9Q0Z7S8 132 aa10.23□□□□□ -0.77
TRIM28-206ENST00000595974 RNF151Q2KHN1 245 aa10.23□□□□□ -0.77
TRIM28-206ENST00000595974 C7orf33Q8WU49 177 aa10.23□□□□□ -0.77
TRIM28-206ENST00000595974 NDUFA1O15239 70 aa10.22□□□□□ -0.77
TRIM28-206ENST00000595974 PTTG1IPP53801 180 aa10.22□□□□□ -0.77
TRIM28-206ENST00000595974 FAM19A3Q7Z5A8 133 aa10.22□□□□□ -0.77
TRIM28-206ENST00000595974 LINC01561Q8N1V8 128 aa10.22□□□□□ -0.77
TRIM28-206ENST00000595974 MRPL35Q9NZE8 188 aaKnown RBP10.22□□□□□ -0.77
TRIM28-206ENST00000595974 HERC1Q15751 4861 aa10.22□□□□□ -0.77
TRIM28-206ENST00000595974 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-206ENST00000595974 ZC2HC1BQ5TFG8 222 aa10.21□□□□□ -0.77
TRIM28-206ENST00000595974 ERASQ7Z444 233 aa10.21□□□□□ -0.77
TRIM28-206ENST00000595974 KRTAP29-1A8MX34 341 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-206ENST00000595974 SEC11AP67812 179 aa10.2□□□□□ -0.78
TRIM28-206ENST00000595974 GAGE2BQ13066 116 aa10.2□□□□□ -0.78
TRIM28-206ENST00000595974 FA2HQ7L5A8 372 aa10.2□□□□□ -0.78
TRIM28-206ENST00000595974 SMCO4Q9NRQ5 59 aa10.2□□□□□ -0.78
TRIM28-206ENST00000595974 RPL18AQ02543 176 aaKnown RBP10.19□□□□□ -0.78
TRIM28-206ENST00000595974 SCGB3A1Q96QR1 104 aa10.19□□□□□ -0.78
TRIM28-206ENST00000595974 TRAPPC1Q9Y5R8 145 aa10.19□□□□□ -0.78
TRIM28-206ENST00000595974 J3QL48 77 aa10.18□□□□□ -0.78
TRIM28-206ENST00000595974 HERVK_113P63121 156 aa10.18□□□□□ -0.78
TRIM28-206ENST00000595974 KIAA0087Q14695 138 aa10.18□□□□□ -0.78
TRIM28-206ENST00000595974 HNRNPA3P51991 378 aaKnown RBP10.17□□□□□ -0.78
TRIM28-206ENST00000595974 LRP1Q07954 4544 aaKnown RBP10.16□□□□□ -0.78
TRIM28-206ENST00000595974 A0A0J9YXV3 536 aa10.16□□□□□ -0.78
TRIM28-206ENST00000595974 C10orf25Q5T742 122 aa10.16□□□□□ -0.78
TRIM28-206ENST00000595974 UNQ6190/PRO20217Q6UXQ8 127 aa10.16□□□□□ -0.78
TRIM28-206ENST00000595974 GEMIN7Q9H840 131 aaKnown RBP10.16□□□□□ -0.78
TRIM28-206ENST00000595974 C6orf48Q9UBA6 75 aa10.16□□□□□ -0.78
TRIM28-206ENST00000595974 FAT3Q8TDW7 4589 aa10.16□□□□□ -0.78
TRIM28-206ENST00000595974 TRBV30A0A0K0K1B3 111 aa10.15□□□□□ -0.78
TRIM28-206ENST00000595974 OXTP01178 125 aa10.15□□□□□ -0.78
TRIM28-206ENST00000595974 TLX1NBP0CAT3 122 aa10.15□□□□□ -0.78
TRIM28-206ENST00000595974 C18orf32Q8TCD1 76 aa10.15□□□□□ -0.78
TRIM28-206ENST00000595974 PRR3P79522 188 aaKnown RBP10.14□□□□□ -0.79
TRIM28-206ENST00000595974 PACRGQ96M98 296 aaPredicted RBP10.14□□□□□ -0.79
TRIM28-206ENST00000595974 CDKN2A-AS1Q9UH64 79 aa10.14□□□□□ -0.79
TRIM28-206ENST00000595974 PRSS2P07478 247 aa10.13□□□□□ -0.79
TRIM28-206ENST00000595974 Q8IZM0 81 aa10.13□□□□□ -0.79
TRIM28-206ENST00000595974 TINCRA0A1B0GVN0 87 aa10.12□□□□□ -0.79
TRIM28-206ENST00000595974 C9orf116Q5BN46 136 aaPredicted RBP10.12□□□□□ -0.79
TRIM28-206ENST00000595974 C2orf82Q6UX34 121 aa10.12□□□□□ -0.79
TRIM28-206ENST00000595974 YPEL4Q96NS1 127 aa10.12□□□□□ -0.79
TRIM28-206ENST00000595974 TOMM7Q9P0U1 55 aa10.12□□□□□ -0.79
TRIM28-206ENST00000595974 A0A1W2PNN7 141 aa10.11□□□□□ -0.79
TRIM28-206ENST00000595974 LINC00614P0C842 121 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 213.7 ms