RNA–Protein interactions for RNA: ENST00000589949.1

H3F3B-209, Transcript of H3 histone family member 3B, humanhuman

TSL 2

Gene H3F3B, Length 842 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3B-209ENST00000589949 NRACQ8N912 160 aa11.26□□□□□ -0.61
H3F3B-209ENST00000589949 HIST1H2BHQ93079 126 aa11.26□□□□□ -0.61
H3F3B-209ENST00000589949 TMEM101Q96IK0 257 aa11.26□□□□□ -0.61
H3F3B-209ENST00000589949 HIST1H2BNQ99877 126 aa11.26□□□□□ -0.61
H3F3B-209ENST00000589949 HIST1H2BMQ99879 126 aa11.26□□□□□ -0.61
H3F3B-209ENST00000589949 IGHV1-58A0A0C4DH39 117 aa11.25□□□□□ -0.61
H3F3B-209ENST00000589949 ODF1Q14990 250 aa11.25□□□□□ -0.61
H3F3B-209ENST00000589949 ZNF664Q8N3J9 261 aa11.25□□□□□ -0.61
H3F3B-209ENST00000589949 C7orf33Q8WU49 177 aa11.25□□□□□ -0.61
H3F3B-209ENST00000589949 CD164L2Q6UWJ8 174 aa11.24□□□□□ -0.61
H3F3B-209ENST00000589949 RNASE13Q5GAN3 156 aaKnown RBP11.23□□□□□ -0.61
H3F3B-209ENST00000589949 CARD19Q96LW7 228 aa11.23□□□□□ -0.61
H3F3B-209ENST00000589949 ALKBH7Q9BT30 221 aaPredicted RBP11.23□□□□□ -0.61
H3F3B-209ENST00000589949 TNXBP22105 4242 aa11.22□□□□□ -0.61
H3F3B-209ENST00000589949 SS18Q15532 418 aa11.22□□□□□ -0.61
H3F3B-209ENST00000589949 MRPL51Q4U2R6 128 aaKnown RBP11.22□□□□□ -0.61
H3F3B-209ENST00000589949 VCYO14598 125 aa11.21□□□□□ -0.61
H3F3B-209ENST00000589949 PPBPP02775 128 aa11.21□□□□□ -0.61
H3F3B-209ENST00000589949 UBE2D4Q9Y2X8 147 aa11.21□□□□□ -0.61
H3F3B-209ENST00000589949 S100A6P06703 90 aa11.2□□□□□ -0.62
H3F3B-209ENST00000589949 CKS2P33552 79 aa11.2□□□□□ -0.62
H3F3B-209ENST00000589949 NDUFA6P56556 154 aa11.2□□□□□ -0.62
H3F3B-209ENST00000589949 SUMO2P61956 95 aaKnown RBP11.2□□□□□ -0.62
H3F3B-209ENST00000589949 SYCNQ0VAF6 134 aa11.2□□□□□ -0.62
H3F3B-209ENST00000589949 ORMDL3Q8N138 153 aa11.2□□□□□ -0.62
H3F3B-209ENST00000589949 IGLV4-69A0A075B6H9 119 aa11.19□□□□□ -0.62
H3F3B-209ENST00000589949 D6R8Y8 96 aa11.19□□□□□ -0.62
H3F3B-209ENST00000589949 FAM104AQ969W3 186 aa11.19□□□□□ -0.62
H3F3B-209ENST00000589949 LINC01600Q96MT4 127 aa11.19□□□□□ -0.62
H3F3B-209ENST00000589949 FCER1GP30273 86 aa11.18□□□□□ -0.62
H3F3B-209ENST00000589949 COA6Q5JTJ3 125 aaKnown RBP11.18□□□□□ -0.62
H3F3B-209ENST00000589949 Q6ZUT4 128 aa11.18□□□□□ -0.62
H3F3B-209ENST00000589949 PRELID3AQ96N28 172 aa11.18□□□□□ -0.62
H3F3B-209ENST00000589949 LAMTOR2Q9Y2Q5 125 aa11.18□□□□□ -0.62
H3F3B-209ENST00000589949 CSDC2Q9Y534 153 aaKnown RBP11.18□□□□□ -0.62
H3F3B-209ENST00000589949 ZNF561-AS1K7EIQ3 104 aa11.17□□□□□ -0.62
H3F3B-209ENST00000589949 PTTG1IPP53801 180 aa11.17□□□□□ -0.62
H3F3B-209ENST00000589949 C18orf32Q8TCD1 76 aa11.17□□□□□ -0.62
H3F3B-209ENST00000589949 LINC00474Q9P2X8 69 aa11.17□□□□□ -0.62
H3F3B-209ENST00000589949 TRAV13-1A0A0B4J241 112 aa11.16□□□□□ -0.62
H3F3B-209ENST00000589949 C5orf52A6NGY3 159 aa11.16□□□□□ -0.62
H3F3B-209ENST00000589949 COX7A2LO14548 114 aa11.16□□□□□ -0.62
H3F3B-209ENST00000589949 SRSF9Q13242 221 aaKnown RBP eCLIP11.16□□□□□ -0.62
H3F3B-209ENST00000589949 A0A1W2PNN7 141 aa11.15□□□□□ -0.62
H3F3B-209ENST00000589949 PPP1R17O96001 155 aa11.15□□□□□ -0.62
H3F3B-209ENST00000589949 SNRPEP62304 92 aaKnown RBP11.15□□□□□ -0.62
H3F3B-209ENST00000589949 C5orf38Q86SI9 138 aa11.15□□□□□ -0.62
H3F3B-209ENST00000589949 BAGE3Q86Y29 109 aa11.15□□□□□ -0.62
H3F3B-209ENST00000589949 NPYP01303 97 aa11.14□□□□□ -0.63
H3F3B-209ENST00000589949 RPL39P62891 51 aaKnown RBP11.14□□□□□ -0.63
H3F3B-209ENST00000589949 GAGE2BQ13066 116 aa11.14□□□□□ -0.63
H3F3B-209ENST00000589949 KIR2DL4Q99706 377 aa11.14□□□□□ -0.63
H3F3B-209ENST00000589949 LRP2P98164 4655 aa11.14□□□□□ -0.63
H3F3B-209ENST00000589949 TNFRSF6BO95407 300 aa11.13□□□□□ -0.63
H3F3B-209ENST00000589949 MALP21145 153 aa11.13□□□□□ -0.63
H3F3B-209ENST00000589949 KRTAP10-8P60410 259 aa11.13□□□□□ -0.63
H3F3B-209ENST00000589949 OPRPNQ99935 248 aaPredicted RBP11.13□□□□□ -0.63
H3F3B-209ENST00000589949 TIMM21Q9BVV7 248 aa11.13□□□□□ -0.63
H3F3B-209ENST00000589949 A0A0J9YXV3 536 aa11.12□□□□□ -0.63
H3F3B-209ENST00000589949 LOC107984640A0A0U1RRK4 108 aa11.12□□□□□ -0.63
H3F3B-209ENST00000589949 PRSS47A8MTI9 375 aa11.12□□□□□ -0.63
H3F3B-209ENST00000589949 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.12□□□□□ -0.63
H3F3B-209ENST00000589949 SPINK6Q6UWN8 80 aa11.12□□□□□ -0.63
H3F3B-209ENST00000589949 C20orf78Q9BR46 151 aa11.12□□□□□ -0.63
H3F3B-209ENST00000589949 MAP1LC3AQ9H492 121 aa11.12□□□□□ -0.63
H3F3B-209ENST00000589949 SERF1AO75920 110 aa11.11□□□□□ -0.63
H3F3B-209ENST00000589949 CAMK2N2Q96S95 79 aa11.11□□□□□ -0.63
H3F3B-209ENST00000589949 PKIGQ9Y2B9 76 aa11.11□□□□□ -0.63
H3F3B-209ENST00000589949 APOMO95445 188 aa11.1□□□□□ -0.63
H3F3B-209ENST00000589949 RPL32P62910 135 aaKnown RBP11.1□□□□□ -0.63
H3F3B-209ENST00000589949 Q6ZRP5 223 aa11.1□□□□□ -0.63
H3F3B-209ENST00000589949 C2orf48Q96LS8 159 aa11.1□□□□□ -0.63
H3F3B-209ENST00000589949 LOC389332A0A1B0GUA5 103 aa11.09□□□□□ -0.63
H3F3B-209ENST00000589949 NUPR1O60356 82 aa11.09□□□□□ -0.63
H3F3B-209ENST00000589949 LINC00614P0C842 121 aa11.09□□□□□ -0.63
H3F3B-209ENST00000589949 LINC00310P59036 64 aa11.09□□□□□ -0.63
H3F3B-209ENST00000589949 LCE2DQ5TA82 110 aaPredicted RBP11.09□□□□□ -0.63
H3F3B-209ENST00000589949 HIST3H2BBQ8N257 126 aa11.09□□□□□ -0.63
H3F3B-209ENST00000589949 CHCHD1Q96BP2 118 aaKnown RBP11.09□□□□□ -0.63
H3F3B-209ENST00000589949 URB1-AS1Q96HZ7 61 aa11.09□□□□□ -0.63
H3F3B-209ENST00000589949 SMIM2Q9BVW6 85 aa11.09□□□□□ -0.63
H3F3B-209ENST00000589949 IFI27P40305 119 aaPredicted RBP11.08□□□□□ -0.64
H3F3B-209ENST00000589949 SPAG11BQ08648 103 aa11.08□□□□□ -0.64
H3F3B-209ENST00000589949 C9orf116Q5BN46 136 aaPredicted RBP11.08□□□□□ -0.64
H3F3B-209ENST00000589949 NXT2Q9NPJ8 142 aaKnown RBP11.08□□□□□ -0.64
H3F3B-209ENST00000589949 IGHV3OR16-9A0A0B4J2B5 98 aa11.07□□□□□ -0.64
H3F3B-209ENST00000589949 LOC105371267A0A1B0GV96 52 aa11.07□□□□□ -0.64
H3F3B-209ENST00000589949 TCAPO15273 167 aa11.07□□□□□ -0.64
H3F3B-209ENST00000589949 S100A2P29034 98 aa11.07□□□□□ -0.64
H3F3B-209ENST00000589949 SMAGPQ0VAQ4 97 aa11.07□□□□□ -0.64
H3F3B-209ENST00000589949 FA2HQ7L5A8 372 aa11.07□□□□□ -0.64
H3F3B-209ENST00000589949 Q8N8P6 123 aa11.07□□□□□ -0.64
H3F3B-209ENST00000589949 LINC01546A6NGU7 62 aa11.06□□□□□ -0.64
H3F3B-209ENST00000589949 RPL18AQ02543 176 aaKnown RBP11.06□□□□□ -0.64
H3F3B-209ENST00000589949 C10orf25Q5T742 122 aa11.06□□□□□ -0.64
H3F3B-209ENST00000589949 TMEM18Q96B42 140 aa11.06□□□□□ -0.64
H3F3B-209ENST00000589949 PSORS1C2Q9UIG4 136 aa11.06□□□□□ -0.64
H3F3B-209ENST00000589949 HSBP1O75506 76 aa11.05□□□□□ -0.64
H3F3B-209ENST00000589949 PDZD11Q5EBL8 140 aa11.05□□□□□ -0.64
H3F3B-209ENST00000589949 REG3GQ6UW15 175 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms