RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 ORAOV1Q8WV07 137 aa8.47□□□□□ -1.05
VMP1-209ENST00000588915 EIF5A2Q9GZV4 153 aaKnown RBP8.47□□□□□ -1.05
VMP1-209ENST00000588915 NAT8BQ9UHF3 227 aa8.47□□□□□ -1.05
VMP1-209ENST00000588915 MRPL51Q4U2R6 128 aaKnown RBP8.46□□□□□ -1.06
VMP1-209ENST00000588915 ALKAL2Q6UX46 152 aa8.46□□□□□ -1.06
VMP1-209ENST00000588915 SPANXA1Q9NS26 97 aa8.46□□□□□ -1.06
VMP1-209ENST00000588915 A0A1B0GW15 77 aa8.45□□□□□ -1.06
VMP1-209ENST00000588915 FAM104AQ969W3 186 aa8.45□□□□□ -1.06
VMP1-209ENST00000588915 SRP19P09132 144 aaKnown RBP8.44□□□□□ -1.06
VMP1-209ENST00000588915 CKS2P33552 79 aa8.44□□□□□ -1.06
VMP1-209ENST00000588915 SMDT1Q9H4I9 107 aa8.44□□□□□ -1.06
VMP1-209ENST00000588915 RPL13AP40429 203 aaKnown RBP8.43□□□□□ -1.06
VMP1-209ENST00000588915 RPL39P62891 51 aaKnown RBP8.43□□□□□ -1.06
VMP1-209ENST00000588915 HBBP68871 147 aa8.43□□□□□ -1.06
VMP1-209ENST00000588915 FAM74A3Q4VXF1 159 aa8.43□□□□□ -1.06
VMP1-209ENST00000588915 C10orf25Q5T742 122 aa8.43□□□□□ -1.06
VMP1-209ENST00000588915 UNQ6190/PRO20217Q6UXQ8 127 aa8.43□□□□□ -1.06
VMP1-209ENST00000588915 C6orf48Q9UBA6 75 aa8.43□□□□□ -1.06
VMP1-209ENST00000588915 SMIM27A0A1W2PRY6 76 aa8.42□□□□□ -1.06
VMP1-209ENST00000588915 FAM168BA1KXE4 195 aa8.42□□□□□ -1.06
VMP1-209ENST00000588915 TNFRSF6BO95407 300 aa8.42□□□□□ -1.06
VMP1-209ENST00000588915 KRTAP1-4P0C5Y4 121 aa8.42□□□□□ -1.06
VMP1-209ENST00000588915 KRTAP11-1Q8IUC1 163 aa8.42□□□□□ -1.06
VMP1-209ENST00000588915 SMIM2Q9BVW6 85 aa8.42□□□□□ -1.06
VMP1-209ENST00000588915 TGIF2-C20orf24A0A0A6YYL0 155 aa8.41□□□□□ -1.06
VMP1-209ENST00000588915 TRBV30A0A0K0K1B3 111 aa8.41□□□□□ -1.06
VMP1-209ENST00000588915 IFITM10A6NMD0 228 aa8.41□□□□□ -1.06
VMP1-209ENST00000588915 KIAA0087Q14695 138 aa8.41□□□□□ -1.06
VMP1-209ENST00000588915 GAGE2EQ4V326 116 aa8.41□□□□□ -1.06
VMP1-209ENST00000588915 GAGE2DQ9UEU5 116 aa8.41□□□□□ -1.06
VMP1-209ENST00000588915 CARHSP1Q9Y2V2 147 aaKnown RBP8.41□□□□□ -1.06
VMP1-209ENST00000588915 PPBPP02775 128 aa8.4□□□□□ -1.06
VMP1-209ENST00000588915 S100A8P05109 93 aa8.4□□□□□ -1.06
VMP1-209ENST00000588915 RPL23P62829 140 aaKnown RBP8.4□□□□□ -1.06
VMP1-209ENST00000588915 FAM19A5Q7Z5A7 132 aaPredicted RBP8.4□□□□□ -1.06
VMP1-209ENST00000588915 NDUFC2-KCTD14E9PQ53 114 aa8.39□□□□□ -1.07
VMP1-209ENST00000588915 F8W036 122 aa8.39□□□□□ -1.07
VMP1-209ENST00000588915 M0QXV9 152 aa8.39□□□□□ -1.07
VMP1-209ENST00000588915 UBE2D1P51668 147 aa8.39□□□□□ -1.07
VMP1-209ENST00000588915 UBE2BP63146 152 aa8.39□□□□□ -1.07
VMP1-209ENST00000588915 KRTAP7-1Q8IUC3 87 aa8.39□□□□□ -1.07
VMP1-209ENST00000588915 LINC01561Q8N1V8 128 aa8.39□□□□□ -1.07
VMP1-209ENST00000588915 PYGO1Q9Y3Y4 419 aa8.39□□□□□ -1.07
VMP1-209ENST00000588915 IFI27P40305 119 aaPredicted RBP8.38□□□□□ -1.07
VMP1-209ENST00000588915 PACRGQ96M98 296 aaPredicted RBP8.38□□□□□ -1.07
VMP1-209ENST00000588915 NAT8Q9UHE5 227 aa8.38□□□□□ -1.07
VMP1-209ENST00000588915 D6R8Y8 96 aa8.37□□□□□ -1.07
VMP1-209ENST00000588915 LINC00242Q5T6M2 205 aa8.37□□□□□ -1.07
VMP1-209ENST00000588915 AKAP14Q86UN6 197 aa8.37□□□□□ -1.07
VMP1-209ENST00000588915 A0A0U1RQV1 116 aa8.36□□□□□ -1.07
VMP1-209ENST00000588915 ZNF861PO60384 105 aa8.36□□□□□ -1.07
VMP1-209ENST00000588915 RAB5AP20339 215 aa8.36□□□□□ -1.07
VMP1-209ENST00000588915 ADIRFQ15847 76 aa8.36□□□□□ -1.07
VMP1-209ENST00000588915 PRR4Q16378 134 aa8.36□□□□□ -1.07
VMP1-209ENST00000588915 NUPR1O60356 82 aa8.35□□□□□ -1.07
VMP1-209ENST00000588915 NPYP01303 97 aa8.35□□□□□ -1.07
VMP1-209ENST00000588915 C9orf129Q5T035 196 aaKnown RBP8.35□□□□□ -1.07
VMP1-209ENST00000588915 IGLV4-3A0A075B6K6 122 aa8.34□□□□□ -1.07
VMP1-209ENST00000588915 A0A1B0GXF2 115 aa8.34□□□□□ -1.07
VMP1-209ENST00000588915 PRSS47A8MTI9 375 aa8.34□□□□□ -1.07
VMP1-209ENST00000588915 ORMDL3Q8N138 153 aa8.34□□□□□ -1.07
VMP1-209ENST00000588915 TMEM141Q96I45 108 aa8.34□□□□□ -1.07
VMP1-209ENST00000588915 MUC2Q02817 5179 aa8.33□□□□□ -1.08
VMP1-209ENST00000588915 C2orf82Q6UX34 121 aa8.33□□□□□ -1.08
VMP1-209ENST00000588915 TMEM136Q6ZRR5 245 aa8.33□□□□□ -1.08
VMP1-209ENST00000588915 LBHQ53QV2 105 aaPredicted RBP8.32□□□□□ -1.08
VMP1-209ENST00000588915 MRPL54Q6P161 138 aaKnown RBP8.32□□□□□ -1.08
VMP1-209ENST00000588915 Q6ZN92 141 aa8.32□□□□□ -1.08
VMP1-209ENST00000588915 TEX43Q6ZNM6 134 aa8.32□□□□□ -1.08
VMP1-209ENST00000588915 C2orf88Q9BSF0 95 aa8.32□□□□□ -1.08
VMP1-209ENST00000588915 NPSP0C0P6 89 aa8.31□□□□□ -1.08
VMP1-209ENST00000588915 ATP5L2Q7Z4Y8 100 aa8.31□□□□□ -1.08
VMP1-209ENST00000588915 PRELID3AQ96N28 172 aa8.31□□□□□ -1.08
VMP1-209ENST00000588915 LAMTOR2Q9Y2Q5 125 aa8.31□□□□□ -1.08
VMP1-209ENST00000588915 C22orf24Q9Y442 160 aa8.31□□□□□ -1.08
VMP1-209ENST00000588915 PRSS2P07478 247 aa8.3□□□□□ -1.08
VMP1-209ENST00000588915 CKS1BP61024 79 aa8.3□□□□□ -1.08
VMP1-209ENST00000588915 PEA15Q15121 130 aa8.3□□□□□ -1.08
VMP1-209ENST00000588915 C6orf226Q5I0X4 101 aa8.3□□□□□ -1.08
VMP1-209ENST00000588915 FAM19A3Q7Z5A8 133 aa8.3□□□□□ -1.08
VMP1-209ENST00000588915 TP73-AS1Q9UF72 201 aa8.3□□□□□ -1.08
VMP1-209ENST00000588915 C9JQL5 133 aa8.29□□□□□ -1.08
VMP1-209ENST00000588915 Q8IZM0 81 aa8.29□□□□□ -1.08
VMP1-209ENST00000588915 AMELXQ99217 191 aa8.29□□□□□ -1.08
VMP1-209ENST00000588915 CYSLTR1Q9Y271 337 aa8.29□□□□□ -1.08
VMP1-209ENST00000588915 C2orf66Q6UXQ4 117 aa8.28□□□□□ -1.08
VMP1-209ENST00000588915 VCX2Q9H322 139 aa8.28□□□□□ -1.08
VMP1-209ENST00000588915 K7EMI3 77 aa8.27□□□□□ -1.09
VMP1-209ENST00000588915 RPL28P46779 137 aaKnown RBP8.27□□□□□ -1.09
VMP1-209ENST00000588915 SEC11AP67812 179 aa8.27□□□□□ -1.09
VMP1-209ENST00000588915 LINC00173Q6ZV60 143 aa8.27□□□□□ -1.09
VMP1-209ENST00000588915 CTDSP1Q9GZU7 261 aa8.27□□□□□ -1.09
VMP1-209ENST00000588915 MAP1LC3AQ9H492 121 aa8.27□□□□□ -1.09
VMP1-209ENST00000588915 CRYGAP11844 174 aa8.26□□□□□ -1.09
VMP1-209ENST00000588915 ORMDL2Q53FV1 153 aa8.26□□□□□ -1.09
VMP1-209ENST00000588915 Q8N8P6 123 aa8.26□□□□□ -1.09
VMP1-209ENST00000588915 ALKBH7Q9BT30 221 aaPredicted RBP8.26□□□□□ -1.09
VMP1-209ENST00000588915 TOMM7Q9P0U1 55 aa8.26□□□□□ -1.09
VMP1-209ENST00000588915 HERVK_113P63121 156 aa8.25□□□□□ -1.09
VMP1-209ENST00000588915 SRSF3P84103 164 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms