RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 OVOL1O14753 267 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 DUSP14O95147 198 aaKnown RBP3.03□□□□□ -1.92
LIG3-211ENST00000588713 MGPP08493 103 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 EBI3Q14213 229 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 Q1RN00 199 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 DEFB136Q30KP8 78 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 PRR9Q5T870 116 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 MINOS1Q5TGZ0 78 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 Q5VSD8 79 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 Q8N1Y9 231 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 SMIM20Q8N5G0 67 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 EEF1AKMT3Q96AZ1 226 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 RPL39LQ96EH5 51 aaKnown RBP3.03□□□□□ -1.92
LIG3-211ENST00000588713 FAM19A4Q96LR4 140 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 LINC00477Q96M19 166 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 METTL26Q96S19 204 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 KLK15Q9H2R5 256 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 PHLDA3Q9Y5J5 127 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 MINOS1-NBL1R4GNA1 71 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 FAT4Q6V0I7 4981 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 DNAH5Q8TE73 4624 aa3.03□□□□□ -1.92
LIG3-211ENST00000588713 TRBV7-1A0A0A6YYK4 115 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 IGHV7-81A0A0B4J1V7 117 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 TRBV27A0A0K0K1C4 114 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 A0A1B0GX51 115 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 LINC01548A6NM66 108 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 CCL24O00175 119 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 LST1O00453 97 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 TRIAP1O43715 76 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 TIMM17BO60830 172 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 TSHBP01222 138 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 ZNF22P17026 224 aaPredicted RBP3.02□□□□□ -1.93
LIG3-211ENST00000588713 S100A4P26447 101 aaKnown RBP3.02□□□□□ -1.93
LIG3-211ENST00000588713 RNASE4P34096 147 aaKnown RBP3.02□□□□□ -1.93
LIG3-211ENST00000588713 IGFL4Q6B9Z1 124 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 SFTA2Q6UW10 78 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 FAM159AQ6UWV7 190 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 RNF182Q8N6D2 247 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 ZFAND2AQ8N6M9 145 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 DNAJC30Q96LL9 226 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 LINC01587Q99440 93 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 ICOSQ9Y6W8 199 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 KIF25-AS1Q9Y6Z4 181 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 S4R3C0 116 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 X6R8D5 127 aa3.02□□□□□ -1.93
LIG3-211ENST00000588713 A0A0J9YXY3 114 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 FAM223BA6NKX1 122 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 SOCS3O14543 225 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 VCYO14598 125 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 COX6CP09669 75 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 RNASE3P12724 160 aaKnown RBP3.01□□□□□ -1.93
LIG3-211ENST00000588713 CRIP2P52943 208 aaPredicted RBP3.01□□□□□ -1.93
LIG3-211ENST00000588713 POLR2KP53803 58 aaKnown RBP3.01□□□□□ -1.93
LIG3-211ENST00000588713 MIAQ16674 131 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 C15orf32Q32M92 178 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 MEIG1Q5JSS6 88 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 SUMO4Q6EEV6 95 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 C2orf82Q6UX34 121 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 TRPT1Q86TN4 253 aaKnown RBP3.01□□□□□ -1.93
LIG3-211ENST00000588713 GPHB5Q86YW7 130 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 FAM223AQ8IWN6 122 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 C14orf178Q8N769 122 aaPredicted RBP3.01□□□□□ -1.93
LIG3-211ENST00000588713 ZNRF2Q8NHG8 242 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 C16orf92Q96LL3 132 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 PPDPFQ9H3Y8 114 aa3.01□□□□□ -1.93
LIG3-211ENST00000588713 FSIP2Q5CZC0 6907 aa3□□□□□ -1.93
LIG3-211ENST00000588713 TEX49A0A1B0GTD5 131 aa3□□□□□ -1.93
LIG3-211ENST00000588713 FAM236AA0A1B0GUQ0 79 aa3□□□□□ -1.93
LIG3-211ENST00000588713 FAM236BA0A1B0GV22 79 aa3□□□□□ -1.93
LIG3-211ENST00000588713 J3KT08 172 aa3□□□□□ -1.93
LIG3-211ENST00000588713 UQCRQO14949 82 aa3□□□□□ -1.93
LIG3-211ENST00000588713 IGHV3-23P01764 117 aa3□□□□□ -1.93
LIG3-211ENST00000588713 CXCL5P42830 114 aa3□□□□□ -1.93
LIG3-211ENST00000588713 LINC00315P59091 139 aa3□□□□□ -1.93
LIG3-211ENST00000588713 ANXA2RQ3ZCQ2 193 aa3□□□□□ -1.93
LIG3-211ENST00000588713 FAM222AQ5U5X8 452 aa3□□□□□ -1.93
LIG3-211ENST00000588713 Q6ZQT7 251 aa3□□□□□ -1.93
LIG3-211ENST00000588713 MUSTN1Q8IVN3 82 aa3□□□□□ -1.93
LIG3-211ENST00000588713 Q8N9W7 124 aa3□□□□□ -1.93
LIG3-211ENST00000588713 COPS9Q8WXC6 57 aa3□□□□□ -1.93
LIG3-211ENST00000588713 LITAFQ99732 161 aa3□□□□□ -1.93
LIG3-211ENST00000588713 TIMM21Q9BVV7 248 aa3□□□□□ -1.93
LIG3-211ENST00000588713 IGLV4-3A0A075B6K6 122 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 TRGV11A0A075B6L2 103 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 A6NDX4 124 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 A8MZ25 164 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 KLLNB2CW77 178 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 H3BUA1 57 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 H7C423 109 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 ATP6V0E1O15342 81 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 ELANEP08246 267 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 UBE2E1P51965 193 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 EMP1P54849 157 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 MRPS36P82909 103 aaKnown RBP2.99□□□□□ -1.93
LIG3-211ENST00000588713 ZNF56Q15929 161 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 ECSCRQ19T08 205 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 C5orf47Q569G3 176 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 C19orf54Q5BKX5 351 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 C9orf153Q5TBE3 101 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 SDIM1Q6ZPB5 146 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms