RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 LINC00469Q8N7U9 141 aa16.85■□□□□ 0.29
SHMT1-207ENST00000580002 Q9HAA7 133 aa16.85■□□□□ 0.29
SHMT1-207ENST00000580002 PAM16Q9Y3D7 125 aa16.85■□□□□ 0.29
SHMT1-207ENST00000580002 SS18Q15532 418 aa16.84■□□□□ 0.29
SHMT1-207ENST00000580002 DNAH10Q8IVF4 4471 aa16.84■□□□□ 0.29
SHMT1-207ENST00000580002 TRAV9-2A0A087WT02 112 aa16.84■□□□□ 0.29
SHMT1-207ENST00000580002 CRPP02741 224 aa16.84■□□□□ 0.29
SHMT1-207ENST00000580002 IGHV3-64A0A075B6Q5 118 aa16.83■□□□□ 0.28
SHMT1-207ENST00000580002 C5orf38Q86SI9 138 aa16.83■□□□□ 0.28
SHMT1-207ENST00000580002 IBA57-AS1B1ANH7 110 aa16.82■□□□□ 0.28
SHMT1-207ENST00000580002 IGHV3OR16-9A0A0B4J2B5 98 aa16.82■□□□□ 0.28
SHMT1-207ENST00000580002 SPINK8P0C7L1 97 aa16.82■□□□□ 0.28
SHMT1-207ENST00000580002 IGLV5-45A0A087WSX0 123 aa16.81■□□□□ 0.28
SHMT1-207ENST00000580002 IGKV2D-26A0A0A0MRZ7 120 aa16.81■□□□□ 0.28
SHMT1-207ENST00000580002 TRAV8-3A0A0A6YYJ7 113 aa16.81■□□□□ 0.28
SHMT1-207ENST00000580002 HERVK_113P63121 156 aa16.81■□□□□ 0.28
SHMT1-207ENST00000580002 KRTAP26-1Q6PEX3 210 aa16.81■□□□□ 0.28
SHMT1-207ENST00000580002 VAMP8Q9BV40 100 aa16.81■□□□□ 0.28
SHMT1-207ENST00000580002 ALMS1Q8TCU4 4167 aa16.8■□□□□ 0.28
SHMT1-207ENST00000580002 TMEM223A0PJW6 202 aa16.8■□□□□ 0.28
SHMT1-207ENST00000580002 GAGE12HA6NDE8 117 aa16.8■□□□□ 0.28
SHMT1-207ENST00000580002 LY6G6CO95867 125 aa16.79■□□□□ 0.28
SHMT1-207ENST00000580002 FOXI1Q12951 378 aa16.79■□□□□ 0.28
SHMT1-207ENST00000580002 SPATA45Q537H7 98 aa16.79■□□□□ 0.28
SHMT1-207ENST00000580002 M0R2N4 97 aa16.78■□□□□ 0.28
SHMT1-207ENST00000580002 MIAQ16674 131 aa16.78■□□□□ 0.28
SHMT1-207ENST00000580002 TP73-AS1Q9UF72 201 aa16.78■□□□□ 0.28
SHMT1-207ENST00000580002 SEC11AP67812 179 aa16.77■□□□□ 0.28
SHMT1-207ENST00000580002 CD164L2Q6UWJ8 174 aa16.77■□□□□ 0.28
SHMT1-207ENST00000580002 TTTY13Q9BZ97 58 aa16.77■□□□□ 0.28
SHMT1-207ENST00000580002 IGKV2D-24A0A075B6R9 120 aa16.76■□□□□ 0.27
SHMT1-207ENST00000580002 NBDYA0A0U1RRE5 68 aa16.75■□□□□ 0.27
SHMT1-207ENST00000580002 S100A12P80511 92 aa16.75■□□□□ 0.27
SHMT1-207ENST00000580002 LINC00476Q8WZB0 136 aa16.75■□□□□ 0.27
SHMT1-207ENST00000580002 TRAV8-4A0A0B4J246 113 aa16.74■□□□□ 0.27
SHMT1-207ENST00000580002 C10orf126Q8N4M7 172 aa16.74■□□□□ 0.27
SHMT1-207ENST00000580002 PRO1933Q9H354 126 aa16.74■□□□□ 0.27
SHMT1-207ENST00000580002 SMIM1B2RUZ4 78 aa16.74■□□□□ 0.27
SHMT1-207ENST00000580002 HSBP1L1C9JCN9 74 aa16.74■□□□□ 0.27
SHMT1-207ENST00000580002 TSPEAR-AS2P59090 65 aa16.74■□□□□ 0.27
SHMT1-207ENST00000580002 A0A087WZ39 114 aa16.73■□□□□ 0.27
SHMT1-207ENST00000580002 MAPKAPK5-AS1Q8N8E1 139 aa16.72■□□□□ 0.27
SHMT1-207ENST00000580002 C14orf144Q96I85 54 aa16.72■□□□□ 0.27
SHMT1-207ENST00000580002 C1orf43Q9BWL3 253 aa16.72■□□□□ 0.27
SHMT1-207ENST00000580002 NMUP48645 174 aa16.72■□□□□ 0.27
SHMT1-207ENST00000580002 PCP2Q8IVA1 136 aa16.72■□□□□ 0.27
SHMT1-207ENST00000580002 DNAH2Q9P225 4427 aa16.71■□□□□ 0.27
SHMT1-207ENST00000580002 E9PLD3 99 aa16.71■□□□□ 0.27
SHMT1-207ENST00000580002 H3BRM9 83 aa16.7■□□□□ 0.26
SHMT1-207ENST00000580002 COX7A2LO14548 114 aa16.7■□□□□ 0.26
SHMT1-207ENST00000580002 HYDINQ4G0P3 5121 aa16.7■□□□□ 0.26
SHMT1-207ENST00000580002 DNAH6Q9C0G6 4158 aa16.69■□□□□ 0.26
SHMT1-207ENST00000580002 IGHV1-58A0A0C4DH39 117 aa16.69■□□□□ 0.26
SHMT1-207ENST00000580002 SACSQ9NZJ4 4579 aa16.69■□□□□ 0.26
SHMT1-207ENST00000580002 IGLV5-39A0A0G2JS06 123 aa16.67■□□□□ 0.26
SHMT1-207ENST00000580002 HERVK_113P61574 105 aa16.67■□□□□ 0.26
SHMT1-207ENST00000580002 K7EP13 123 aa16.66■□□□□ 0.26
SHMT1-207ENST00000580002 LEPROTO15243 131 aa16.66■□□□□ 0.26
SHMT1-207ENST00000580002 LINC00526Q96FQ7 95 aa16.65■□□□□ 0.26
SHMT1-207ENST00000580002 TOMM7Q9P0U1 55 aa16.65■□□□□ 0.26
SHMT1-207ENST00000580002 PCP4L1A6NKN8 68 aa16.64■□□□□ 0.25
SHMT1-207ENST00000580002 MALP21145 153 aa16.64■□□□□ 0.25
SHMT1-207ENST00000580002 Q6ZR54 194 aa16.64■□□□□ 0.25
SHMT1-207ENST00000580002 J3QQQ9 107 aa16.64■□□□□ 0.25
SHMT1-207ENST00000580002 TTC32Q5I0X7 151 aa16.64■□□□□ 0.25
SHMT1-207ENST00000580002 TSTD3H0UI37 97 aa16.62■□□□□ 0.25
SHMT1-207ENST00000580002 ORAOV1Q8WV07 137 aa16.61■□□□□ 0.25
SHMT1-207ENST00000580002 LECT2O14960 151 aa16.61■□□□□ 0.25
SHMT1-207ENST00000580002 COX8AP10176 69 aa16.61■□□□□ 0.25
SHMT1-207ENST00000580002 C15orf56Q8N910 161 aa16.61■□□□□ 0.25
SHMT1-207ENST00000580002 KIAA0087Q14695 138 aa16.6■□□□□ 0.25
SHMT1-207ENST00000580002 COX7B2Q8TF08 81 aa16.6■□□□□ 0.25
SHMT1-207ENST00000580002 WFDC2Q14508 124 aa16.59■□□□□ 0.25
SHMT1-207ENST00000580002 HIGD2BQ4VC39 106 aa16.59■□□□□ 0.25
SHMT1-207ENST00000580002 C6orf223Q8N319 242 aa16.59■□□□□ 0.25
SHMT1-207ENST00000580002 PLEKHB2Q96CS7 222 aa16.59■□□□□ 0.25
SHMT1-207ENST00000580002 Q6ZRN7 208 aaPredicted RBP16.59■□□□□ 0.25
SHMT1-207ENST00000580002 LINC01561Q8N1V8 128 aa16.59■□□□□ 0.25
SHMT1-207ENST00000580002 RMI2Q96E14 147 aa16.59■□□□□ 0.25
SHMT1-207ENST00000580002 LGALS3P17931 250 aaKnown RBP16.58■□□□□ 0.24
SHMT1-207ENST00000580002 C2orf82Q6UX34 121 aa16.57■□□□□ 0.24
SHMT1-207ENST00000580002 BOD1L2Q8IYS8 172 aa16.56■□□□□ 0.24
SHMT1-207ENST00000580002 ZNF815PA8K554 130 aa16.56■□□□□ 0.24
SHMT1-207ENST00000580002 ZNF625Q96I27 306 aaPredicted RBP16.55■□□□□ 0.24
SHMT1-207ENST00000580002 NDUFA12Q9UI09 145 aa16.55■□□□□ 0.24
SHMT1-207ENST00000580002 MYMXA0A1B0GTQ4 84 aa16.54■□□□□ 0.24
SHMT1-207ENST00000580002 SLC25A34Q6PIV7 304 aa16.54■□□□□ 0.24
SHMT1-207ENST00000580002 USP17L23D6RBM5 183 aa16.54■□□□□ 0.24
SHMT1-207ENST00000580002 SPAG11BQ08648 103 aa16.54■□□□□ 0.24
SHMT1-207ENST00000580002 C6orf226Q5I0X4 101 aa16.54■□□□□ 0.24
SHMT1-207ENST00000580002 TM2D2Q9BX73 214 aa16.53■□□□□ 0.24
SHMT1-207ENST00000580002 PSCAO43653 123 aa16.52■□□□□ 0.24
SHMT1-207ENST00000580002 APOMO95445 188 aa16.52■□□□□ 0.24
SHMT1-207ENST00000580002 Q8IZM0 81 aa16.52■□□□□ 0.24
SHMT1-207ENST00000580002 PRSS2P07478 247 aa16.51■□□□□ 0.23
SHMT1-207ENST00000580002 C10orf25Q5T742 122 aa16.51■□□□□ 0.23
SHMT1-207ENST00000580002 MIEN1Q9BRT3 115 aa16.51■□□□□ 0.23
SHMT1-207ENST00000580002 COX11Q9Y6N1 276 aa16.51■□□□□ 0.23
SHMT1-207ENST00000580002 DNAH17Q9UFH2 4485 aa16.51■□□□□ 0.23
SHMT1-207ENST00000580002 KMT2CQ8NEZ4 4911 aaKnown RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms