RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 IGHV3OR16-9A0A0B4J2B5 98 aa9.41□□□□□ -0.9
SS18-212ENST00000579061 IFITM10A6NMD0 228 aa9.41□□□□□ -0.9
SS18-212ENST00000579061 S100PP25815 95 aa9.41□□□□□ -0.9
SS18-212ENST00000579061 ORMDL2Q53FV1 153 aa9.41□□□□□ -0.9
SS18-212ENST00000579061 C10orf91Q5T1B1 145 aa9.41□□□□□ -0.9
SS18-212ENST00000579061 C5orf38Q86SI9 138 aa9.41□□□□□ -0.9
SS18-212ENST00000579061 LINC00474Q9P2X8 69 aa9.41□□□□□ -0.9
SS18-212ENST00000579061 IGLV4-69A0A075B6H9 119 aa9.4□□□□□ -0.9
SS18-212ENST00000579061 IGLV4-3A0A075B6K6 122 aa9.4□□□□□ -0.9
SS18-212ENST00000579061 NPSP0C0P6 89 aa9.4□□□□□ -0.9
SS18-212ENST00000579061 OR10D4PQ8NGN7 298 aa9.4□□□□□ -0.9
SS18-212ENST00000579061 TMEM141Q96I45 108 aa9.4□□□□□ -0.9
SS18-212ENST00000579061 CYSLTR1Q9Y271 337 aa9.4□□□□□ -0.9
SS18-212ENST00000579061 CARHSP1Q9Y2V2 147 aaKnown RBP9.4□□□□□ -0.9
SS18-212ENST00000579061 A0A096LNI7 61 aa9.39□□□□□ -0.91
SS18-212ENST00000579061 IGKV2-24A0A0C4DH68 120 aa9.39□□□□□ -0.91
SS18-212ENST00000579061 KRTAP29-1A8MX34 341 aaPredicted RBP9.39□□□□□ -0.91
SS18-212ENST00000579061 F8WDY8 70 aa9.39□□□□□ -0.91
SS18-212ENST00000579061 G0S2P27469 103 aa9.39□□□□□ -0.91
SS18-212ENST00000579061 MAJINQ3KP22 176 aa9.39□□□□□ -0.91
SS18-212ENST00000579061 COX19Q49B96 90 aa9.39□□□□□ -0.91
SS18-212ENST00000579061 C2orf66Q6UXQ4 117 aa9.39□□□□□ -0.91
SS18-212ENST00000579061 GNB1LQ9BYB4 327 aa9.39□□□□□ -0.91
SS18-212ENST00000579061 Q6ZRU5 148 aa9.38□□□□□ -0.91
SS18-212ENST00000579061 CAMK2N2Q96S95 79 aa9.38□□□□□ -0.91
SS18-212ENST00000579061 TGIF2-C20orf24A0A0A6YYL0 155 aa9.37□□□□□ -0.91
SS18-212ENST00000579061 LOC107984640A0A0U1RRK4 108 aa9.37□□□□□ -0.91
SS18-212ENST00000579061 SPAG11BQ08648 103 aa9.37□□□□□ -0.91
SS18-212ENST00000579061 RHEBQ15382 184 aa9.37□□□□□ -0.91
SS18-212ENST00000579061 TEX43Q6ZNM6 134 aa9.37□□□□□ -0.91
SS18-212ENST00000579061 STPG4Q8N801 248 aa9.37□□□□□ -0.91
SS18-212ENST00000579061 RNF151Q2KHN1 245 aa9.36□□□□□ -0.91
SS18-212ENST00000579061 KIAA1644Q3SXP7 199 aa9.36□□□□□ -0.91
SS18-212ENST00000579061 LINC00242Q5T6M2 205 aa9.36□□□□□ -0.91
SS18-212ENST00000579061 Q6ZN92 141 aa9.36□□□□□ -0.91
SS18-212ENST00000579061 C7orf33Q8WU49 177 aa9.36□□□□□ -0.91
SS18-212ENST00000579061 ORAOV1Q8WV07 137 aa9.36□□□□□ -0.91
SS18-212ENST00000579061 AMELXQ99217 191 aa9.36□□□□□ -0.91
SS18-212ENST00000579061 HERC1Q15751 4861 aa9.36□□□□□ -0.91
SS18-212ENST00000579061 A0A087WZ39 114 aa9.35□□□□□ -0.91
SS18-212ENST00000579061 IGIPA6NJ69 53 aa9.35□□□□□ -0.91
SS18-212ENST00000579061 J3QL48 77 aa9.35□□□□□ -0.91
SS18-212ENST00000579061 OXTP01178 125 aa9.35□□□□□ -0.91
SS18-212ENST00000579061 MT-ND6P03923 174 aa9.35□□□□□ -0.91
SS18-212ENST00000579061 PTTG1IPP53801 180 aa9.35□□□□□ -0.91
SS18-212ENST00000579061 C2orf88Q9BSF0 95 aa9.35□□□□□ -0.91
SS18-212ENST00000579061 RPS10P5Q9NQ39 176 aa9.35□□□□□ -0.91
SS18-212ENST00000579061 UBE2D1P51668 147 aa9.34□□□□□ -0.91
SS18-212ENST00000579061 PAPPA-AS1Q5QFB9 102 aa9.34□□□□□ -0.91
SS18-212ENST00000579061 LINC00173Q6ZV60 143 aa9.34□□□□□ -0.91
SS18-212ENST00000579061 LINC01561Q8N1V8 128 aa9.34□□□□□ -0.91
SS18-212ENST00000579061 VCX2Q9H322 139 aa9.34□□□□□ -0.91
SS18-212ENST00000579061 MRPL35Q9NZE8 188 aaKnown RBP9.34□□□□□ -0.91
SS18-212ENST00000579061 LINC01549A6NIU2 74 aa9.33□□□□□ -0.92
SS18-212ENST00000579061 FAM19A3Q7Z5A8 133 aa9.33□□□□□ -0.92
SS18-212ENST00000579061 SLC7A5P1Q8MH63 180 aa9.33□□□□□ -0.92
SS18-212ENST00000579061 TOMM6Q96B49 74 aa9.33□□□□□ -0.92
SS18-212ENST00000579061 TIMM17AQ99595 171 aa9.33□□□□□ -0.92
SS18-212ENST00000579061 ALKBH7Q9BT30 221 aaPredicted RBP9.33□□□□□ -0.92
SS18-212ENST00000579061 LINC01546A6NGU7 62 aa9.32□□□□□ -0.92
SS18-212ENST00000579061 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.32□□□□□ -0.92
SS18-212ENST00000579061 NDUFA1O15239 70 aa9.32□□□□□ -0.92
SS18-212ENST00000579061 HNRNPA3P51991 378 aaKnown RBP9.32□□□□□ -0.92
SS18-212ENST00000579061 FAT3Q8TDW7 4589 aa9.32□□□□□ -0.92
SS18-212ENST00000579061 GAGE2BQ13066 116 aa9.31□□□□□ -0.92
SS18-212ENST00000579061 LRP1Q07954 4544 aaKnown RBP9.31□□□□□ -0.92
SS18-212ENST00000579061 SEC11AP67812 179 aa9.3□□□□□ -0.92
SS18-212ENST00000579061 FABP9Q0Z7S8 132 aa9.3□□□□□ -0.92
SS18-212ENST00000579061 KIAA0087Q14695 138 aa9.3□□□□□ -0.92
SS18-212ENST00000579061 ZC2HC1BQ5TFG8 222 aa9.3□□□□□ -0.92
SS18-212ENST00000579061 ERASQ7Z444 233 aa9.3□□□□□ -0.92
SS18-212ENST00000579061 MRPL18Q9H0U6 180 aaKnown RBP9.3□□□□□ -0.92
SS18-212ENST00000579061 SNAPINO95295 136 aa9.29□□□□□ -0.92
SS18-212ENST00000579061 TLX1NBP0CAT3 122 aa9.29□□□□□ -0.92
SS18-212ENST00000579061 APOC3P02656 99 aa9.28□□□□□ -0.92
SS18-212ENST00000579061 HERVK_113P63121 156 aa9.28□□□□□ -0.92
SS18-212ENST00000579061 RPL18AQ02543 176 aaKnown RBP9.28□□□□□ -0.92
SS18-212ENST00000579061 C10orf25Q5T742 122 aa9.28□□□□□ -0.92
SS18-212ENST00000579061 SVBPQ8N300 66 aa9.28□□□□□ -0.92
SS18-212ENST00000579061 SCGB3A1Q96QR1 104 aa9.28□□□□□ -0.92
SS18-212ENST00000579061 A0A0J9YXV3 536 aa9.27□□□□□ -0.93
SS18-212ENST00000579061 TRBV30A0A0K0K1B3 111 aa9.27□□□□□ -0.93
SS18-212ENST00000579061 PRR3P79522 188 aaKnown RBP9.27□□□□□ -0.93
SS18-212ENST00000579061 UNQ6190/PRO20217Q6UXQ8 127 aa9.27□□□□□ -0.93
SS18-212ENST00000579061 C6orf48Q9UBA6 75 aa9.27□□□□□ -0.93
SS18-212ENST00000579061 FA2HQ7L5A8 372 aa9.26□□□□□ -0.93
SS18-212ENST00000579061 SMCO4Q9NRQ5 59 aa9.26□□□□□ -0.93
SS18-212ENST00000579061 A0A1W2PNN7 141 aa9.25□□□□□ -0.93
SS18-212ENST00000579061 C9orf116Q5BN46 136 aaPredicted RBP9.25□□□□□ -0.93
SS18-212ENST00000579061 GEMIN7Q9H840 131 aaKnown RBP9.25□□□□□ -0.93
SS18-212ENST00000579061 TRAPPC1Q9Y5R8 145 aa9.25□□□□□ -0.93
SS18-212ENST00000579061 Q6ZRP5 223 aa9.24□□□□□ -0.93
SS18-212ENST00000579061 Q8IZM0 81 aa9.24□□□□□ -0.93
SS18-212ENST00000579061 CDKN2A-AS1Q9UH64 79 aa9.24□□□□□ -0.93
SS18-212ENST00000579061 PRSS2P07478 247 aa9.23□□□□□ -0.93
SS18-212ENST00000579061 S100A1P23297 94 aa9.23□□□□□ -0.93
SS18-212ENST00000579061 PACRGQ96M98 296 aaPredicted RBP9.23□□□□□ -0.93
SS18-212ENST00000579061 TINCRA0A1B0GVN0 87 aa9.22□□□□□ -0.93
SS18-212ENST00000579061 ATP6V1G1O75348 118 aa9.22□□□□□ -0.93
SS18-212ENST00000579061 C6orf226Q5I0X4 101 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms