RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 CARD19Q96LW7 228 aa12.53□□□□□ -0.4
SS18-209ENST00000578595 C2orf88Q9BSF0 95 aa12.53□□□□□ -0.4
SS18-209ENST00000578595 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.53□□□□□ -0.4
SS18-209ENST00000578595 CHTF8P0CG12 524 aa12.52□□□□□ -0.41
SS18-209ENST00000578595 PLA2G1BP04054 148 aaKnown RBP12.51□□□□□ -0.41
SS18-209ENST00000578595 INAFM2P0DMQ5 153 aa12.51□□□□□ -0.41
SS18-209ENST00000578595 G0S2P27469 103 aa12.51□□□□□ -0.41
SS18-209ENST00000578595 COX6A2Q02221 97 aa12.51□□□□□ -0.41
SS18-209ENST00000578595 FAM104AQ969W3 186 aa12.51□□□□□ -0.41
SS18-209ENST00000578595 ALKBH7Q9BT30 221 aaPredicted RBP12.51□□□□□ -0.41
SS18-209ENST00000578595 SMCO4Q9NRQ5 59 aa12.51□□□□□ -0.41
SS18-209ENST00000578595 TRAPPC1Q9Y5R8 145 aa12.51□□□□□ -0.41
SS18-209ENST00000578595 IGKV2-24A0A0C4DH68 120 aa12.5□□□□□ -0.41
SS18-209ENST00000578595 SPAG11BQ08648 103 aa12.5□□□□□ -0.41
SS18-209ENST00000578595 SYCNQ0VAF6 134 aa12.5□□□□□ -0.41
SS18-209ENST00000578595 FA2HQ7L5A8 372 aa12.5□□□□□ -0.41
SS18-209ENST00000578595 CAMK2N2Q96S95 79 aa12.5□□□□□ -0.41
SS18-209ENST00000578595 VCX2Q9H322 139 aa12.5□□□□□ -0.41
SS18-209ENST00000578595 IGLV4-69A0A075B6H9 119 aa12.49□□□□□ -0.41
SS18-209ENST00000578595 PANO1I0J062 215 aa12.49□□□□□ -0.41
SS18-209ENST00000578595 ZC2HC1BQ5TFG8 222 aa12.49□□□□□ -0.41
SS18-209ENST00000578595 FAT1Q14517 4588 aa12.49□□□□□ -0.41
SS18-209ENST00000578595 ORAOV1Q8WV07 137 aa12.48□□□□□ -0.41
SS18-209ENST00000578595 PKIGQ9Y2B9 76 aa12.48□□□□□ -0.41
SS18-209ENST00000578595 MAJINQ3KP22 176 aa12.46□□□□□ -0.41
SS18-209ENST00000578595 PAPPA-AS1Q5QFB9 102 aa12.46□□□□□ -0.41
SS18-209ENST00000578595 SCGB3A1Q96QR1 104 aa12.46□□□□□ -0.41
SS18-209ENST00000578595 FLG2Q5D862 2391 aaPredicted RBP12.45□□□□□ -0.42
SS18-209ENST00000578595 SRRM2Q9UQ35 2752 aaKnown RBP12.45□□□□□ -0.42
SS18-209ENST00000578595 IGHV3OR16-9A0A0B4J2B5 98 aa12.45□□□□□ -0.42
SS18-209ENST00000578595 LINC00242Q5T6M2 205 aa12.45□□□□□ -0.42
SS18-209ENST00000578595 OR10D4PQ8NGN7 298 aa12.45□□□□□ -0.42
SS18-209ENST00000578595 TOMM6Q96B49 74 aa12.45□□□□□ -0.42
SS18-209ENST00000578595 UBE2D1P51668 147 aa12.44□□□□□ -0.42
SS18-209ENST00000578595 Q6ZRU5 148 aa12.44□□□□□ -0.42
SS18-209ENST00000578595 SLC7A5P1Q8MH63 180 aa12.44□□□□□ -0.42
SS18-209ENST00000578595 SPACA4Q8TDM5 124 aa12.44□□□□□ -0.42
SS18-209ENST00000578595 A0A087WYN8 130 aa12.43□□□□□ -0.42
SS18-209ENST00000578595 A0A096LNI7 61 aa12.43□□□□□ -0.42
SS18-209ENST00000578595 IGIPA6NJ69 53 aa12.43□□□□□ -0.42
SS18-209ENST00000578595 NPSP0C0P6 89 aa12.43□□□□□ -0.42
SS18-209ENST00000578595 LINC00173Q6ZV60 143 aa12.43□□□□□ -0.42
SS18-209ENST00000578595 TIMM17AQ99595 171 aa12.43□□□□□ -0.42
SS18-209ENST00000578595 AMELXQ99217 191 aa12.42□□□□□ -0.42
SS18-209ENST00000578595 RPL37AP61513 92 aaKnown RBP12.41□□□□□ -0.42
SS18-209ENST00000578595 GAGE2BQ13066 116 aa12.41□□□□□ -0.42
SS18-209ENST00000578595 CIRBPQ14011 172 aaKnown RBP12.41□□□□□ -0.42
SS18-209ENST00000578595 ERASQ7Z444 233 aa12.41□□□□□ -0.42
SS18-209ENST00000578595 CBLN2Q8IUK8 224 aa12.41□□□□□ -0.42
SS18-209ENST00000578595 C2orf48Q96LS8 159 aa12.41□□□□□ -0.42
SS18-209ENST00000578595 A0A087WZ39 114 aa12.4□□□□□ -0.42
SS18-209ENST00000578595 LOC107984640A0A0U1RRK4 108 aa12.4□□□□□ -0.42
SS18-209ENST00000578595 NDUFA1O15239 70 aa12.4□□□□□ -0.42
SS18-209ENST00000578595 RPL18AQ02543 176 aaKnown RBP12.4□□□□□ -0.42
SS18-209ENST00000578595 C18orf32Q8TCD1 76 aa12.4□□□□□ -0.42
SS18-209ENST00000578595 GEMIN7Q9H840 131 aaKnown RBP12.4□□□□□ -0.42
SS18-209ENST00000578595 LINC01549A6NIU2 74 aa12.39□□□□□ -0.43
SS18-209ENST00000578595 STPG4Q8N801 248 aa12.39□□□□□ -0.43
SS18-209ENST00000578595 VPS13BQ7Z7G8 4022 aa12.39□□□□□ -0.43
SS18-209ENST00000578595 A0A0J9YXV3 536 aa12.38□□□□□ -0.43
SS18-209ENST00000578595 SEC11AP67812 179 aa12.38□□□□□ -0.43
SS18-209ENST00000578595 PACRGQ96M98 296 aaPredicted RBP12.38□□□□□ -0.43
SS18-209ENST00000578595 TOMM7Q9P0U1 55 aa12.38□□□□□ -0.43
SS18-209ENST00000578595 LINC00474Q9P2X8 69 aa12.38□□□□□ -0.43
SS18-209ENST00000578595 LINC01546A6NGU7 62 aa12.37□□□□□ -0.43
SS18-209ENST00000578595 PRSS2P07478 247 aa12.37□□□□□ -0.43
SS18-209ENST00000578595 HERVK_113P63121 156 aa12.37□□□□□ -0.43
SS18-209ENST00000578595 C7orf33Q8WU49 177 aa12.36□□□□□ -0.43
SS18-209ENST00000578595 LINC00614P0C842 121 aa12.35□□□□□ -0.43
SS18-209ENST00000578595 NDUFA6P56556 154 aa12.35□□□□□ -0.43
SS18-209ENST00000578595 RAB5BP61020 215 aa12.35□□□□□ -0.43
SS18-209ENST00000578595 PMCHL1Q16048 86 aa12.35□□□□□ -0.43
SS18-209ENST00000578595 LINC00469Q8N7U9 141 aa12.35□□□□□ -0.43
SS18-209ENST00000578595 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.34□□□□□ -0.43
SS18-209ENST00000578595 PTTG1IPP53801 180 aa12.34□□□□□ -0.43
SS18-209ENST00000578595 UNQ6190/PRO20217Q6UXQ8 127 aa12.34□□□□□ -0.43
SS18-209ENST00000578595 YPEL4Q96NS1 127 aa12.34□□□□□ -0.43
SS18-209ENST00000578595 PLAC8Q9NZF1 115 aa12.34□□□□□ -0.43
SS18-209ENST00000578595 F8WDY8 70 aa12.33□□□□□ -0.44
SS18-209ENST00000578595 HBDP02042 147 aa12.33□□□□□ -0.44
SS18-209ENST00000578595 MRPL35Q9NZE8 188 aaKnown RBP12.33□□□□□ -0.44
SS18-209ENST00000578595 CDKN2A-AS1Q9UH64 79 aa12.33□□□□□ -0.44
SS18-209ENST00000578595 PMVKQ15126 192 aa12.32□□□□□ -0.44
SS18-209ENST00000578595 C10orf25Q5T742 122 aa12.32□□□□□ -0.44
SS18-209ENST00000578595 LINC01561Q8N1V8 128 aa12.32□□□□□ -0.44
SS18-209ENST00000578595 URB1-AS1Q96HZ7 61 aa12.32□□□□□ -0.44
SS18-209ENST00000578595 DMBT1Q9UGM3 2413 aaPredicted RBP12.32□□□□□ -0.44
SS18-209ENST00000578595 CKS1BP61024 79 aa12.31□□□□□ -0.44
SS18-209ENST00000578595 RNF151Q2KHN1 245 aa12.31□□□□□ -0.44
SS18-209ENST00000578595 C2orf82Q6UX34 121 aa12.31□□□□□ -0.44
SS18-209ENST00000578595 FAM19A3Q7Z5A8 133 aa12.31□□□□□ -0.44
SS18-209ENST00000578595 C6orf226Q5I0X4 101 aa12.3□□□□□ -0.44
SS18-209ENST00000578595 CST9LQ9H4G1 147 aa12.3□□□□□ -0.44
SS18-209ENST00000578595 C6orf48Q9UBA6 75 aa12.3□□□□□ -0.44
SS18-209ENST00000578595 TINCRA0A1B0GVN0 87 aa12.29□□□□□ -0.44
SS18-209ENST00000578595 KIAA0087Q14695 138 aa12.29□□□□□ -0.44
SS18-209ENST00000578595 A0A096LNJ9 63 aa12.28□□□□□ -0.44
SS18-209ENST00000578595 GAGE2EQ4V326 116 aa12.28□□□□□ -0.44
SS18-209ENST00000578595 GAGE2DQ9UEU5 116 aa12.28□□□□□ -0.44
SS18-209ENST00000578595 TRBV30A0A0K0K1B3 111 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms