RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PSMG3Q9BT73 122 aaPredicted RBP3.09□□□□□ -1.91
VPS53-219ENST00000576019 ZNF727A8MUV8 499 aa3.08□□□□□ -1.92
VPS53-219ENST00000576019 GYPAP02724 150 aa3.08□□□□□ -1.92
VPS53-219ENST00000576019 COPZ1P61923 177 aa3.08□□□□□ -1.92
VPS53-219ENST00000576019 DIAPH2-AS1Q14236 149 aa3.08□□□□□ -1.92
VPS53-219ENST00000576019 GLIPR1L1Q6UWM5 242 aa3.08□□□□□ -1.92
VPS53-219ENST00000576019 MMGT1Q8N4V1 131 aa3.08□□□□□ -1.92
VPS53-219ENST00000576019 C20orf166-AS1Q96NR2 134 aa3.08□□□□□ -1.92
VPS53-219ENST00000576019 SCN3BQ9NY72 215 aa3.08□□□□□ -1.92
VPS53-219ENST00000576019 FKBP11Q9NYL4 201 aa3.08□□□□□ -1.92
VPS53-219ENST00000576019 MUC17Q685J3 4493 aa3.07□□□□□ -1.92
VPS53-219ENST00000576019 LOC100130705A0A1B0GUX0 176 aa3.07□□□□□ -1.92
VPS53-219ENST00000576019 IBA57-AS1B1ANH7 110 aa3.07□□□□□ -1.92
VPS53-219ENST00000576019 GPX1P07203 203 aa3.07□□□□□ -1.92
VPS53-219ENST00000576019 LINC00471Q8N535 108 aa3.07□□□□□ -1.92
VPS53-219ENST00000576019 OR2T35Q8NGX2 323 aa3.07□□□□□ -1.92
VPS53-219ENST00000576019 NAA38Q9BRA0 125 aaKnown RBP3.07□□□□□ -1.92
VPS53-219ENST00000576019 LY96Q9Y6Y9 160 aa3.07□□□□□ -1.92
VPS53-219ENST00000576019 TRAV30A0A087WSZ9 112 aa3.06□□□□□ -1.92
VPS53-219ENST00000576019 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.06□□□□□ -1.92
VPS53-219ENST00000576019 OR2T8A6NH00 312 aa3.06□□□□□ -1.92
VPS53-219ENST00000576019 UQCRQO14949 82 aa3.06□□□□□ -1.92
VPS53-219ENST00000576019 HBDP02042 147 aa3.06□□□□□ -1.92
VPS53-219ENST00000576019 MRPS36P82909 103 aaKnown RBP3.06□□□□□ -1.92
VPS53-219ENST00000576019 IGFL1Q6UW32 110 aa3.06□□□□□ -1.92
VPS53-219ENST00000576019 ZNF826PQ6ZT77 177 aa3.06□□□□□ -1.92
VPS53-219ENST00000576019 SNX29P2Q8IUI4 249 aa3.06□□□□□ -1.92
VPS53-219ENST00000576019 MAGOHBQ96A72 148 aaKnown RBP3.06□□□□□ -1.92
VPS53-219ENST00000576019 LINC00467Q9BRT7 94 aa3.06□□□□□ -1.92
VPS53-219ENST00000576019 SLC50A1Q9BRV3 221 aa3.06□□□□□ -1.92
VPS53-219ENST00000576019 PRO2289Q9P1D8 64 aa3.06□□□□□ -1.92
VPS53-219ENST00000576019 DEFB131BA0A096LNP1 70 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 IGKV2D-26A0A0A0MRZ7 120 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 FAM236AA0A1B0GUQ0 79 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 FAM236BA0A1B0GV22 79 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 SDHAF1A6NFY7 115 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 IFITM5A6NNB3 132 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 NCR2O95944 276 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 TPT1P13693 172 aaKnown RBP3.05□□□□□ -1.92
VPS53-219ENST00000576019 FABP4P15090 132 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 HIST1H1BP16401 226 aaKnown RBP3.05□□□□□ -1.92
VPS53-219ENST00000576019 QRFPP83859 136 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 SS18Q15532 418 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 C9orf163Q8N9P6 203 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 COMMD3Q9UBI1 195 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 HILPDAQ9Y5L2 63 aa3.05□□□□□ -1.92
VPS53-219ENST00000576019 TMEM218A2RU14 115 aa3.04□□□□□ -1.92
VPS53-219ENST00000576019 KRTAP2-3P0C7H8 128 aa3.04□□□□□ -1.92
VPS53-219ENST00000576019 ASAH2BP0C7U1 165 aa3.04□□□□□ -1.92
VPS53-219ENST00000576019 ROMO1P60602 79 aa3.04□□□□□ -1.92
VPS53-219ENST00000576019 CDK6Q00534 326 aa3.04□□□□□ -1.92
VPS53-219ENST00000576019 SPANXN5Q5MJ07 72 aa3.04□□□□□ -1.92
VPS53-219ENST00000576019 Q6ZTI0 123 aa3.04□□□□□ -1.92
VPS53-219ENST00000576019 C5orf56Q8N8D9 126 aa3.04□□□□□ -1.92
VPS53-219ENST00000576019 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.04□□□□□ -1.92
VPS53-219ENST00000576019 PP6455Q8WZ26 134 aa3.04□□□□□ -1.92
VPS53-219ENST00000576019 KRTAP2-4Q9BYR9 128 aa3.04□□□□□ -1.92
VPS53-219ENST00000576019 IGKV2-24A0A0C4DH68 120 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 A0A0G2JQZ4 141 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 ZNF705FA8MVS1 300 aaPredicted RBP3.03□□□□□ -1.92
VPS53-219ENST00000576019 DEFB4AO15263 64 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 LYRM1O43325 122 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 PROSCO94903 275 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 SLC25A4P12235 298 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 HLA-DRB4P13762 266 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 SNRPD3P62318 126 aaKnown RBP3.03□□□□□ -1.92
VPS53-219ENST00000576019 MINOS1Q5TGZ0 78 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 TMEM91Q6ZNR0 172 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 Q6ZRN7 208 aaPredicted RBP3.03□□□□□ -1.92
VPS53-219ENST00000576019 Q8N814 137 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 SDF2Q99470 211 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 SNHG12Q9BXW3 62 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 TPRKBQ9Y3C4 175 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 LHFPL6Q9Y693 200 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 HLA-DRB4X5D2U9 266 aa3.03□□□□□ -1.92
VPS53-219ENST00000576019 TRAV27A0A087WT01 109 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 ZNF670-ZNF695F2Z2N8 137 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 C17orf112F2Z3M2 114 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 ZNF737O75373 536 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 CRPP02741 224 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 BAALC-AS2P0C853 105 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 GNG4P50150 75 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 ZNF846Q147U1 533 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 Q6ZSA8 131 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 C4orf33Q8N1A6 199 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 C10orf111Q8N326 155 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 C9orf62Q8N4C0 152 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 CLEC2BQ92478 149 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 HYLS1Q96M11 299 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 TIMM21Q9BVV7 248 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 C14orf132Q9NPU4 83 aa3.02□□□□□ -1.93
VPS53-219ENST00000576019 M0R129 80 aa3.01□□□□□ -1.93
VPS53-219ENST00000576019 AKAIN1P0CW23 69 aa3.01□□□□□ -1.93
VPS53-219ENST00000576019 BRS3P32247 399 aa3.01□□□□□ -1.93
VPS53-219ENST00000576019 OR5AS1Q8N127 324 aa3.01□□□□□ -1.93
VPS53-219ENST00000576019 MRPL57Q9BQC6 102 aaKnown RBP3.01□□□□□ -1.93
VPS53-219ENST00000576019 TMEM191AQ9H0A3 160 aa3.01□□□□□ -1.93
VPS53-219ENST00000576019 hDV103S1A0JD37 113 aa3□□□□□ -1.93
VPS53-219ENST00000576019 MIFP14174 115 aa3□□□□□ -1.93
VPS53-219ENST00000576019 CAV3P56539 151 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms