RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 FUSP35637 526 aaKnown RBP eCLIP6.22□□□□□ -1.41
CCDC40-214ENST00000575431 KRTAP10-1P60331 282 aa6.22□□□□□ -1.41
CCDC40-214ENST00000575431 HERVK_113P63121 156 aa6.22□□□□□ -1.41
CCDC40-214ENST00000575431 PMVKQ15126 192 aa6.22□□□□□ -1.41
CCDC40-214ENST00000575431 LINC00173Q6ZV60 143 aa6.22□□□□□ -1.41
CCDC40-214ENST00000575431 C5orf38Q86SI9 138 aa6.22□□□□□ -1.41
CCDC40-214ENST00000575431 OR10D4PQ8NGN7 298 aa6.22□□□□□ -1.41
CCDC40-214ENST00000575431 A0A087WZ39 114 aa6.21□□□□□ -1.42
CCDC40-214ENST00000575431 A0A096LNJ9 63 aa6.21□□□□□ -1.42
CCDC40-214ENST00000575431 HIGD2BQ4VC39 106 aa6.21□□□□□ -1.42
CCDC40-214ENST00000575431 PDZD11Q5EBL8 140 aa6.21□□□□□ -1.42
CCDC40-214ENST00000575431 C2orf48Q96LS8 159 aa6.21□□□□□ -1.42
CCDC40-214ENST00000575431 CST9LQ9H4G1 147 aa6.21□□□□□ -1.42
CCDC40-214ENST00000575431 GEMIN7Q9H840 131 aaKnown RBP6.21□□□□□ -1.42
CCDC40-214ENST00000575431 BIRC6Q9NR09 4857 aa6.21□□□□□ -1.42
CCDC40-214ENST00000575431 IGHV3-64A0A075B6Q5 118 aa6.2□□□□□ -1.42
CCDC40-214ENST00000575431 ATP6V1G1O75348 118 aa6.2□□□□□ -1.42
CCDC40-214ENST00000575431 FAT2Q9NYQ8 4349 aa6.2□□□□□ -1.42
CCDC40-214ENST00000575431 FRAS1Q86XX4 4008 aa6.19□□□□□ -1.42
CCDC40-214ENST00000575431 IGLV4-69A0A075B6H9 119 aa6.19□□□□□ -1.42
CCDC40-214ENST00000575431 A0A0J9YXV3 536 aa6.19□□□□□ -1.42
CCDC40-214ENST00000575431 TINCRA0A1B0GVN0 87 aa6.19□□□□□ -1.42
CCDC40-214ENST00000575431 SLPIP03973 132 aa6.19□□□□□ -1.42
CCDC40-214ENST00000575431 COX6A2Q02221 97 aa6.19□□□□□ -1.42
CCDC40-214ENST00000575431 SYCNQ0VAF6 134 aa6.19□□□□□ -1.42
CCDC40-214ENST00000575431 PMCHL1Q16048 86 aa6.19□□□□□ -1.42
CCDC40-214ENST00000575431 ZC2HC1BQ5TFG8 222 aa6.19□□□□□ -1.42
CCDC40-214ENST00000575431 Q6ZSA8 131 aa6.19□□□□□ -1.42
CCDC40-214ENST00000575431 SERF1AO75920 110 aa6.18□□□□□ -1.42
CCDC40-214ENST00000575431 NDUFA6P56556 154 aa6.18□□□□□ -1.42
CCDC40-214ENST00000575431 SPAG11BQ08648 103 aa6.18□□□□□ -1.42
CCDC40-214ENST00000575431 SDIM1Q6ZPB5 146 aa6.18□□□□□ -1.42
CCDC40-214ENST00000575431 ORAOV1Q8WV07 137 aa6.18□□□□□ -1.42
CCDC40-214ENST00000575431 CARD19Q96LW7 228 aa6.18□□□□□ -1.42
CCDC40-214ENST00000575431 PACRGQ96M98 296 aaPredicted RBP6.18□□□□□ -1.42
CCDC40-214ENST00000575431 CAMK2N2Q96S95 79 aa6.18□□□□□ -1.42
CCDC40-214ENST00000575431 IGLV5-45A0A087WSX0 123 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 H3BRM9 83 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST1H2BKO60814 126 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 LEPROTL1O95214 131 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST1H2BJP06899 126 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST1H2BOP23527 126 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST1H2BBP33778 126 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST1H2BDP58876 126 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST1H2BCP62807 126 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST2H2BEQ16778 126 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 LINC01620Q4KN68 170 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST1H2BHQ93079 126 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 IFI27L1Q96BM0 104 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST1H2BNQ99877 126 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 HIST1H2BMQ99879 126 aa6.17□□□□□ -1.42
CCDC40-214ENST00000575431 PKD1P98161 4303 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 TRAV12-1A0A0B4J245 112 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 NDUFA1O15239 70 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 PRSS2P07478 247 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 IGLC3P0DOY3 106 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 XGP55808 180 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 RNF151Q2KHN1 245 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 FAM19A2Q8N3H0 131 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 LINC00469Q8N7U9 141 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 MRPL35Q9NZE8 188 aaKnown RBP6.16□□□□□ -1.42
CCDC40-214ENST00000575431 LINC00474Q9P2X8 69 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 CDKN2A-AS1Q9UH64 79 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 HSPB8Q9UJY1 196 aa6.16□□□□□ -1.42
CCDC40-214ENST00000575431 CXCL5P42830 114 aa6.15□□□□□ -1.42
CCDC40-214ENST00000575431 Q6ZRU5 148 aa6.15□□□□□ -1.42
CCDC40-214ENST00000575431 Q8IZM0 81 aa6.15□□□□□ -1.42
CCDC40-214ENST00000575431 LINC00526Q96FQ7 95 aa6.15□□□□□ -1.42
CCDC40-214ENST00000575431 CHAC1Q9BUX1 264 aa6.15□□□□□ -1.42
CCDC40-214ENST00000575431 FAM30AQ9NZY2 134 aa6.15□□□□□ -1.42
CCDC40-214ENST00000575431 LINC00310P59036 64 aa6.14□□□□□ -1.43
CCDC40-214ENST00000575431 CKS1BP61024 79 aa6.14□□□□□ -1.43
CCDC40-214ENST00000575431 CIRBPQ14011 172 aaKnown RBP6.14□□□□□ -1.43
CCDC40-214ENST00000575431 KIAA0087Q14695 138 aa6.14□□□□□ -1.43
CCDC40-214ENST00000575431 C6orf226Q5I0X4 101 aa6.14□□□□□ -1.43
CCDC40-214ENST00000575431 CHTOPQ9Y3Y2 248 aaKnown RBP6.14□□□□□ -1.43
CCDC40-214ENST00000575431 HECTD4Q9Y4D8 3996 aa6.13□□□□□ -1.43
CCDC40-214ENST00000575431 DNAH11Q96DT5 4516 aa6.13□□□□□ -1.43
CCDC40-214ENST00000575431 TRBV30A0A0K0K1B3 111 aa6.13□□□□□ -1.43
CCDC40-214ENST00000575431 LOC107984640A0A0U1RRK4 108 aa6.13□□□□□ -1.43
CCDC40-214ENST00000575431 SMIM1B2RUZ4 78 aa6.13□□□□□ -1.43
CCDC40-214ENST00000575431 F8VRH5 84 aa6.13□□□□□ -1.43
CCDC40-214ENST00000575431 COA6Q5JTJ3 125 aaKnown RBP6.13□□□□□ -1.43
CCDC40-214ENST00000575431 DPH3Q96FX2 82 aa6.13□□□□□ -1.43
CCDC40-214ENST00000575431 TOMM7Q9P0U1 55 aa6.13□□□□□ -1.43
CCDC40-214ENST00000575431 NUPR1O60356 82 aa6.12□□□□□ -1.43
CCDC40-214ENST00000575431 SCXQ7RTU7 201 aa6.12□□□□□ -1.43
CCDC40-214ENST00000575431 Q8N1X5 172 aa6.12□□□□□ -1.43
CCDC40-214ENST00000575431 CIRBP-AS1Q8TBR5 109 aa6.12□□□□□ -1.43
CCDC40-214ENST00000575431 MAP1LC3CQ9BXW4 147 aa6.12□□□□□ -1.43
CCDC40-214ENST00000575431 C11orf86A6NJI1 115 aa6.11□□□□□ -1.43
CCDC40-214ENST00000575431 FAM229AH3BQW9 127 aa6.11□□□□□ -1.43
CCDC40-214ENST00000575431 TLX1NBP0CAT3 122 aa6.11□□□□□ -1.43
CCDC40-214ENST00000575431 FABP4P15090 132 aa6.11□□□□□ -1.43
CCDC40-214ENST00000575431 ZNF22P17026 224 aaPredicted RBP6.11□□□□□ -1.43
CCDC40-214ENST00000575431 TMEM170BQ5T4T1 132 aa6.11□□□□□ -1.43
CCDC40-214ENST00000575431 SFTA2Q6UW10 78 aa6.11□□□□□ -1.43
CCDC40-214ENST00000575431 UNQ6190/PRO20217Q6UXQ8 127 aa6.11□□□□□ -1.43
CCDC40-214ENST00000575431 SPACA4Q8TDM5 124 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms