RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 C9orf116Q5BN46 136 aaPredicted RBP11.15□□□□□ -0.62
CHD3-214ENST00000572579 C10orf25Q5T742 122 aa11.15□□□□□ -0.62
CHD3-214ENST00000572579 Q6ZRP5 223 aa11.15□□□□□ -0.62
CHD3-214ENST00000572579 SMDT1Q9H4I9 107 aa11.15□□□□□ -0.62
CHD3-214ENST00000572579 SPAG11BQ08648 103 aa11.14□□□□□ -0.63
CHD3-214ENST00000572579 PKIGQ9Y2B9 76 aa11.14□□□□□ -0.63
CHD3-214ENST00000572579 MRPS36P82909 103 aaKnown RBP11.13□□□□□ -0.63
CHD3-214ENST00000572579 SMAGPQ0VAQ4 97 aa11.13□□□□□ -0.63
CHD3-214ENST00000572579 TMEM18Q96B42 140 aa11.13□□□□□ -0.63
CHD3-214ENST00000572579 SPANXA1Q9NS26 97 aa11.13□□□□□ -0.63
CHD3-214ENST00000572579 PHF5AQ7RTV0 110 aaKnown RBP11.12□□□□□ -0.63
CHD3-214ENST00000572579 KRTAP11-1Q8IUC1 163 aa11.12□□□□□ -0.63
CHD3-214ENST00000572579 F8W036 122 aa11.11□□□□□ -0.63
CHD3-214ENST00000572579 RNF151Q2KHN1 245 aa11.11□□□□□ -0.63
CHD3-214ENST00000572579 PSORS1C2Q9UIG4 136 aa11.11□□□□□ -0.63
CHD3-214ENST00000572579 FAM168BA1KXE4 195 aa11.1□□□□□ -0.63
CHD3-214ENST00000572579 UNQ6190/PRO20217Q6UXQ8 127 aa11.1□□□□□ -0.63
CHD3-214ENST00000572579 TMEM136Q6ZRR5 245 aa11.1□□□□□ -0.63
CHD3-214ENST00000572579 KRTAP7-1Q8IUC3 87 aa11.1□□□□□ -0.63
CHD3-214ENST00000572579 OR10D4PQ8NGN7 298 aa11.1□□□□□ -0.63
CHD3-214ENST00000572579 ORAOV1Q8WV07 137 aa11.1□□□□□ -0.63
CHD3-214ENST00000572579 PPBPP02775 128 aa11.09□□□□□ -0.63
CHD3-214ENST00000572579 RPL18AQ02543 176 aaKnown RBP11.09□□□□□ -0.63
CHD3-214ENST00000572579 KIAA0087Q14695 138 aa11.09□□□□□ -0.63
CHD3-214ENST00000572579 MRPL35Q9NZE8 188 aaKnown RBP11.09□□□□□ -0.63
CHD3-214ENST00000572579 IFITM10A6NMD0 228 aa11.08□□□□□ -0.64
CHD3-214ENST00000572579 PRSS47A8MTI9 375 aa11.08□□□□□ -0.64
CHD3-214ENST00000572579 S100A8P05109 93 aa11.08□□□□□ -0.64
CHD3-214ENST00000572579 LINC00242Q5T6M2 205 aa11.08□□□□□ -0.64
CHD3-214ENST00000572579 ZC2HC1BQ5TFG8 222 aa11.08□□□□□ -0.64
CHD3-214ENST00000572579 ORMDL3Q8N138 153 aa11.08□□□□□ -0.64
CHD3-214ENST00000572579 PRELID3AQ96N28 172 aa11.08□□□□□ -0.64
CHD3-214ENST00000572579 C6orf48Q9UBA6 75 aa11.08□□□□□ -0.64
CHD3-214ENST00000572579 IGLV4-3A0A075B6K6 122 aa11.07□□□□□ -0.64
CHD3-214ENST00000572579 REG3GQ6UW15 175 aa11.06□□□□□ -0.64
CHD3-214ENST00000572579 ATP5L2Q7Z4Y8 100 aa11.06□□□□□ -0.64
CHD3-214ENST00000572579 PYGO1Q9Y3Y4 419 aa11.06□□□□□ -0.64
CHD3-214ENST00000572579 A0A087WZ39 114 aa11.05□□□□□ -0.64
CHD3-214ENST00000572579 LOC389332A0A1B0GUA5 103 aa11.05□□□□□ -0.64
CHD3-214ENST00000572579 TLX1NBP0CAT3 122 aa11.04□□□□□ -0.64
CHD3-214ENST00000572579 F8WDY8 70 aa11.03□□□□□ -0.64
CHD3-214ENST00000572579 NDUFA1O15239 70 aa11.03□□□□□ -0.64
CHD3-214ENST00000572579 MT-ND6P03923 174 aa11.03□□□□□ -0.64
CHD3-214ENST00000572579 RAB5AP20339 215 aa11.03□□□□□ -0.64
CHD3-214ENST00000572579 C1orf137Q5JT78 98 aa11.03□□□□□ -0.64
CHD3-214ENST00000572579 LINC00173Q6ZV60 143 aa11.03□□□□□ -0.64
CHD3-214ENST00000572579 LPAP08519 4548 aa11.03□□□□□ -0.64
CHD3-214ENST00000572579 UBE2D1P51668 147 aa11.02□□□□□ -0.65
CHD3-214ENST00000572579 C2orf82Q6UX34 121 aa11.02□□□□□ -0.65
CHD3-214ENST00000572579 IMMP2LQ96T52 175 aa11.02□□□□□ -0.65
CHD3-214ENST00000572579 IFI27P40305 119 aaPredicted RBP11.01□□□□□ -0.65
CHD3-214ENST00000572579 GAGE2EQ4V326 116 aa11.01□□□□□ -0.65
CHD3-214ENST00000572579 GAGE2DQ9UEU5 116 aa11.01□□□□□ -0.65
CHD3-214ENST00000572579 Q8N8P6 123 aa11□□□□□ -0.65
CHD3-214ENST00000572579 TMEM141Q96I45 108 aa11□□□□□ -0.65
CHD3-214ENST00000572579 AMELXQ99217 191 aa11□□□□□ -0.65
CHD3-214ENST00000572579 TGIF2-C20orf24A0A0A6YYL0 155 aa10.99□□□□□ -0.65
CHD3-214ENST00000572579 IGIPA6NJ69 53 aa10.99□□□□□ -0.65
CHD3-214ENST00000572579 IGLV7-43P04211 117 aa10.99□□□□□ -0.65
CHD3-214ENST00000572579 FAM19A5Q7Z5A7 132 aaPredicted RBP10.99□□□□□ -0.65
CHD3-214ENST00000572579 LAMTOR2Q9Y2Q5 125 aa10.99□□□□□ -0.65
CHD3-214ENST00000572579 C9orf129Q5T035 196 aaKnown RBP10.98□□□□□ -0.65
CHD3-214ENST00000572579 C2orf66Q6UXQ4 117 aa10.98□□□□□ -0.65
CHD3-214ENST00000572579 MAP1LC3AQ9H492 121 aa10.98□□□□□ -0.65
CHD3-214ENST00000572579 ANAPC16Q96DE5 110 aa10.97□□□□□ -0.65
CHD3-214ENST00000572579 MT-ND4LP03901 98 aa10.96□□□□□ -0.65
CHD3-214ENST00000572579 PNRC1Q12796 327 aaPredicted RBP10.96□□□□□ -0.65
CHD3-214ENST00000572579 TEX43Q6ZNM6 134 aa10.96□□□□□ -0.65
CHD3-214ENST00000572579 LINC01561Q8N1V8 128 aa10.95□□□□□ -0.66
CHD3-214ENST00000572579 PRR26Q8N8Z3 221 aa10.95□□□□□ -0.66
CHD3-214ENST00000572579 CYSLTR1Q9Y271 337 aa10.95□□□□□ -0.66
CHD3-214ENST00000572579 TRBV30A0A0K0K1B3 111 aa10.94□□□□□ -0.66
CHD3-214ENST00000572579 FAM19A3Q7Z5A8 133 aa10.94□□□□□ -0.66
CHD3-214ENST00000572579 KRTAP1-4P0C5Y4 121 aa10.93□□□□□ -0.66
CHD3-214ENST00000572579 VCX2Q9H322 139 aa10.93□□□□□ -0.66
CHD3-214ENST00000572579 NDUFC2-KCTD14E9PQ53 114 aa10.92□□□□□ -0.66
CHD3-214ENST00000572579 ADCYAP1P18509 176 aa10.92□□□□□ -0.66
CHD3-214ENST00000572579 KIAA1644Q3SXP7 199 aa10.92□□□□□ -0.66
CHD3-214ENST00000572579 H0Y9J4 135 aa10.91□□□□□ -0.66
CHD3-214ENST00000572579 M0QXV9 152 aa10.91□□□□□ -0.66
CHD3-214ENST00000572579 ORMDL2Q53FV1 153 aa10.91□□□□□ -0.66
CHD3-214ENST00000572579 DIRC1Q969H9 104 aa10.91□□□□□ -0.66
CHD3-214ENST00000572579 C2orf88Q9BSF0 95 aa10.9□□□□□ -0.66
CHD3-214ENST00000572579 CDKN2A-AS1Q9UH64 79 aa10.9□□□□□ -0.66
CHD3-214ENST00000572579 NPSP0C0P6 89 aa10.89□□□□□ -0.67
CHD3-214ENST00000572579 Q6ZN92 141 aa10.89□□□□□ -0.67
CHD3-214ENST00000572579 LINC00469Q8N7U9 141 aa10.89□□□□□ -0.67
CHD3-214ENST00000572579 K7EMI3 77 aa10.88□□□□□ -0.67
CHD3-214ENST00000572579 CLLU1Q5K131 121 aa10.88□□□□□ -0.67
CHD3-214ENST00000572579 TOMM6Q96B49 74 aa10.88□□□□□ -0.67
CHD3-214ENST00000572579 PACRGQ96M98 296 aaPredicted RBP10.88□□□□□ -0.67
CHD3-214ENST00000572579 CTDSP1Q9GZU7 261 aa10.88□□□□□ -0.67
CHD3-214ENST00000572579 NXT2Q9NPJ8 142 aaKnown RBP10.88□□□□□ -0.67
CHD3-214ENST00000572579 TOMM7Q9P0U1 55 aa10.88□□□□□ -0.67
CHD3-214ENST00000572579 RAB14P61106 215 aa10.87□□□□□ -0.67
CHD3-214ENST00000572579 Q8IZM0 81 aa10.87□□□□□ -0.67
CHD3-214ENST00000572579 IFITM2Q01629 132 aa10.86□□□□□ -0.67
CHD3-214ENST00000572579 C6orf226Q5I0X4 101 aa10.86□□□□□ -0.67
CHD3-214ENST00000572579 TIMM17AQ99595 171 aa10.86□□□□□ -0.67
CHD3-214ENST00000572579 XAGE1AQ9HD64 81 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms